View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18012_low_3 (Length: 350)
Name: NF18012_low_3
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18012_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 8467151 - 8467315
Alignment:
| Q |
24 |
actgtagctttgctgtaggaggtgggcatactgccaacagaccactgttagcttctctttgtaaagccttcctgatatactattttcttatctgatgagc |
123 |
Q |
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| T |
8467151 |
actgtagctttgctgtaggaggtgggcatactgccaacagaccactgttagcttctctttgtaaagccttcctgatatactattttcttatctgatgaac |
8467250 |
T |
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| Q |
124 |
ttgtgcctaactctaactaccacgagagctatcaagcacaaccagctttctgccctaaatcacag |
188 |
Q |
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| T |
8467251 |
ttgtgcctaactctaactaccacgagagctatcaagcacaaccagctttctgccctgaatcacag |
8467315 |
T |
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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 8467380 - 8467458
Alignment:
| Q |
257 |
ctagtatgcttgtgtgcagtgtcagagcttaatttgtgaaaatagcttgttctattttattaataattcatttattatt |
335 |
Q |
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| T |
8467380 |
ctagtatggttgtgtgcagtgtcagagcttaatttgtgaaaatagcttgttctattttattaataattcatttattatt |
8467458 |
T |
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