View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18012_low_5 (Length: 330)
Name: NF18012_low_5
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18012_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 29355965 - 29356295
Alignment:
| Q |
1 |
ctcttccatgttttactgctattgtgatgaatcatatgagttaattttgtttctcttaaaagcaagttatgttatcaaattgacttaactcacatgagta |
100 |
Q |
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| T |
29355965 |
ctcttccatgttctactgctattttgatgaatcaaatgagttaattttgtttctcataaaagcaagttatattatcaaattgacttaactcacatgagta |
29356064 |
T |
|
| Q |
101 |
aatggattaaattgattgatattaaagttaaggaccaaagtaaacttttaaaataagttaagagaccaccaaagagatatttaagccaata--annnnnn |
198 |
Q |
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| T |
29356065 |
aatggattaaattgattgattttaaagttaaggatcaaagtaaacttttaaaataagttaagagaccaccaaagagatatttaagccaatagtttttttt |
29356164 |
T |
|
| Q |
199 |
nnatgactcgaacatcgtaactgtatagactaattcttcaaatcaagttgaactgcaatgaatgacaaagttcttccttaaaagatttaactttgatgca |
298 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29356165 |
ttatgactcgaacatcgtaactgcatagactaattcttcgaatcaagttaaactgcaatgaatgacaaagttcttccttaaaagatttaactttgatgca |
29356264 |
T |
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| Q |
299 |
ttttaaggttgaattcaaaccaataaccttt |
329 |
Q |
| |
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| T |
29356265 |
ttttaaggttgaattcaaaccaaaaaccttt |
29356295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 161
Target Start/End: Complemental strand, 12728138 - 12728081
Alignment:
| Q |
105 |
gattaaattgattgatattaaagttaag-gaccaaagtaaacttttaaaataagttaa |
161 |
Q |
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| T |
12728138 |
gattaaattgactgatattaaagttaagagaccaaactataatcttaaaataagttaa |
12728081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 166
Target Start/End: Original strand, 26372799 - 26372859
Alignment:
| Q |
106 |
attaaattgattgatattaaagttaaggaccaaagtaaacttttaaaataagttaagagac |
166 |
Q |
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||||||||||| ||| ||||||||| | ||| |||||||||||||||||||||||||| |
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| T |
26372799 |
attaaattgatcgattttaaagttagatattaaactaaacttttaaaataagttaagagac |
26372859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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