View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18012_low_6 (Length: 323)
Name: NF18012_low_6
Description: NF18012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18012_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 304
Target Start/End: Original strand, 30668577 - 30668859
Alignment:
| Q |
21 |
caaacctatcattttatttcgcattagtcacccaattattttatttctgtaaattaatttggaaaattcaagataatttcataatttaaagggattggac |
120 |
Q |
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| T |
30668577 |
caaacctatcattttatttcgcattagtcacccaattattttatttctgtaaattaatttggaaaattcaagataatttcataatttaaagggattggac |
30668676 |
T |
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| Q |
121 |
ccatcagttaatgtcactattacattttgcatgttggcctaggaactcataactttcatcatactgcaattataggaaattcagaactttcctactttct |
220 |
Q |
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| T |
30668677 |
ccatcagttaatgtcactgttacattttgcatgttggcctaggaactcataactttcatcatactgcaattaaaggaaattcagaactttcctactttct |
30668776 |
T |
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| Q |
221 |
tcactgatatgcttcacaataatgtcactttattaggnnnnnnnnntttgttttaaaagtaaatgtcattttcattagaattat |
304 |
Q |
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| T |
30668777 |
tcactgatatgcttcacaataatgtcactttattaggaaaaaaaaaattgtttt-aaagtaaatgtcattttcattagaattat |
30668859 |
T |
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