View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_10 (Length: 539)
Name: NF18013_high_10
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 539
Target Start/End: Original strand, 46337082 - 46337603
Alignment:
| Q |
18 |
aactcctacattccatcgacttgtgcacttgttggtaagaatatgctcattggctatttatttatacacatgaatgtttgaattttgtgaggacccttcc |
117 |
Q |
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| T |
46337082 |
aactcctacattccatcgacttgtgcacttgttggtaagaatatgctcattggctatttatttatacacatgaatgtttgaattttgtgaggacccttcc |
46337181 |
T |
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| Q |
118 |
aagcccatatcttattcaatcctcataaatgtttgtagtttccttgttgaaggtcattggtactttggtacgtgaattgacgagtgttggtgccttctca |
217 |
Q |
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| T |
46337182 |
aagcccatatcttattcaatcctcataaatgtttgtagtttccttgttgaaggtcattggtactttggtacgtgaattgacgagtgttggtgccttctca |
46337281 |
T |
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| Q |
218 |
ccccatagaagttgggccatcaatatctataggcaccnnnnnnnggctaacatatatgtcacaatgcttgttttctcattatcagagtgtccataataat |
317 |
Q |
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| T |
46337282 |
ccccatagaagttgggccatcaatatctataggcaccaaaaaaaggctaacatatatgtcacaatgcttgttttctcattatcagagtgtccataataat |
46337381 |
T |
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| Q |
318 |
tagggtattatcaatcgaaggtcgaatataagttaacatgagagaagctctacaaggattccacttaaccatccaaaagctaatatgattcaaatatcac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337382 |
tagggtattatcaatcgaaggtcgaatataagttaacatgagagaagctctacaaggattccacttaaccatccaaaagctaatatgattcaaatatcac |
46337481 |
T |
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| Q |
418 |
aactgctatactatataattttgaaactgatccccaatacttgttcaagcggtccatataggagagacatccagttgatagtctattttaatttaacatg |
517 |
Q |
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|||||||| || |||| ||||||||||||||||| |||||||||| || | |||||| ||||||| ||| |||| | ||| |||||||||||||||| |
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| T |
46337482 |
aactgctacacaatatgattttgaaactgatcccaaatacttgttaaatctttccataaaggagagtcatagagttaagagttgattttaatttaacatg |
46337581 |
T |
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| Q |
518 |
caaaactttgtttttaacatat |
539 |
Q |
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| T |
46337582 |
caaatcattatttttaacatat |
46337603 |
T |
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