View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_11 (Length: 485)
Name: NF18013_high_11
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 292
Target Start/End: Original strand, 7595443 - 7595717
Alignment:
| Q |
12 |
gaatatgtattggacttctagaatcaagacaacattggacttcatgtaggtaatggaagtacatttgcagtacttaggtacatcatattactaacatatt |
111 |
Q |
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| T |
7595443 |
gaatatgtattggacttctagaattaagacaacattggacttcatgtaggtaatggaagtacatt-gcagtacttaggtacatcatattactaacatatt |
7595541 |
T |
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| Q |
112 |
gccaactcctcttctcattgaagatagtgcaactaactagaaagagcagataagttttgatacatcatattattctattctatgacaatctttaacgaac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7595542 |
gccaactcctcttctcattgaagatagtgcaactaactagaaagagcaaataagttttgatacatcatat-----tattctatgacaatctttaacgaac |
7595636 |
T |
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| Q |
212 |
ttcatcccttgttatttctcaaactcaatgtctttgttcagattatggtggaaaatttcttcaatccatttttatgtctac |
292 |
Q |
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| T |
7595637 |
ttcatcccttgttatttctcaaactcaatgtctttgttcagattatggtggaaaatttcttcaatccatttttatgtctac |
7595717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 293 - 468
Target Start/End: Original strand, 7596535 - 7596710
Alignment:
| Q |
293 |
tctacaccgaggaactcattcatcgattcactaacttcatgactttatctttaggccttcgtggaagatggttaaacaatttatcgttgataggcaagtg |
392 |
Q |
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| T |
7596535 |
tctacaccgaggaacttattcatcaattcactaacttcatgactttatctttaggccttcgtggaaaatggttaaacaatttatcgttgataggcaagtg |
7596634 |
T |
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| Q |
393 |
caacagtcaatgaacatcatttagagccatcttactacttgtaaaatgaaatctcttggtctccttatgccacatt |
468 |
Q |
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| T |
7596635 |
caacagtcaatgaacatcatttagagccatcttactacttgtaagatgaaatcttttggtctccttatgccacatt |
7596710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 22424445 - 22424390
Alignment:
| Q |
227 |
ttctcaaactcaatgtctttgttcagattatggtggaaaatttcttcaatccattt |
282 |
Q |
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| T |
22424445 |
ttctcaaactcaatggctttgttcatatttttgtggaaaatttcttgaagccattt |
22424390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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