View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_12 (Length: 471)
Name: NF18013_high_12
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Complemental strand, 35157788 - 35157347
Alignment:
| Q |
18 |
gtttttgctgatgatagcattctgttttacaaggctagtaaaatggaagcaaagttcttaatggagtcattcaaagaatatcaattgtcttcaggatgta |
117 |
Q |
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| T |
35157788 |
gtttttgctgatgatagcattctgttttacaagactagtaaaatggaagcaaagttcttaatggagtcattcaaagaatatcaattgtcttcaggatgta |
35157689 |
T |
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| Q |
118 |
caaaagataaatctagacaagttgaaatgatttttacattttagtacttatacttctttgcataaaagctcattttcataccttatattaaccatgatta |
217 |
Q |
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| T |
35157688 |
caaaagataaatctagacaagttgaaatggtttttacattttagtacttatacttctttgcataaaagctcattttcataccttatattaaccatgatta |
35157589 |
T |
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| Q |
218 |
ttttgcttagacaattagagaaatcaagaaacacaggaacatgggaatttagtatattgttttacaatgcattaattttgaaattcagtaaagtaggcta |
317 |
Q |
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| T |
35157588 |
ttttgcttagacaattagagaaatcaagaaacacaggaacatgggaatttagtatattgttttacaatgcattaattttgaaattcagtaaagtaggcta |
35157489 |
T |
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| Q |
318 |
tgagcttcaatgttttttacactatatacgcatgaatgtatttaattagtaaatcaaaatacaaatgtttgtatgttgttaaacactgaaaaacttttcc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35157488 |
tgagcttcaatgttttttacactatatacgcatgaatgtgtttaattagtaaatcaaaatacaaatgtttgtatgttgttaaacactgaaaaacttttcc |
35157389 |
T |
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| Q |
418 |
ggcaaagttaacatagctccaataaagaaaaacgtcgagaat |
459 |
Q |
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| T |
35157388 |
ggcaaagttaacatagctccaataaagaaaaacgtcgagaat |
35157347 |
T |
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