View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_high_13 (Length: 465)

Name: NF18013_high_13
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_high_13
NF18013_high_13
[»] chr6 (4 HSPs)
chr6 (10-252)||(35240358-35240607)
chr6 (181-252)||(35241102-35241173)
chr6 (135-246)||(11423778-11423887)
chr6 (180-231)||(31121215-31121266)
[»] chr2 (1 HSPs)
chr2 (253-447)||(38917825-38918019)
[»] chr8 (3 HSPs)
chr8 (10-218)||(14110978-14111191)
chr8 (180-254)||(14112522-14112596)
chr8 (13-65)||(40948525-40948579)
[»] chr4 (3 HSPs)
chr4 (135-252)||(1962532-1962649)
chr4 (180-253)||(1961986-1962059)
chr4 (180-231)||(25506233-25506284)
[»] chr3 (2 HSPs)
chr3 (180-231)||(40396867-40396918)
chr3 (212-252)||(44087922-44087962)
[»] chr7 (1 HSPs)
chr7 (170-246)||(36071940-36072015)
[»] chr5 (1 HSPs)
chr5 (180-231)||(14591839-14591890)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 35240607 - 35240358
Alignment:
Q  10 catcatcaatatagatggtgttcactaggtagtgtt--tattattgaagaagatgaaacagtttt-gtgttttacagtagcttgtctctcgagggaagaa 106  Q
    |||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35240607 catcatcaatatagatggtgttcattaggtagtgttgttattattgaagaagatgaaacagtttttgtgttttacagtagcttgtctctcgagggaagaa 35240508  T
Q  107 ggaaaggaaattaaatgaaatagacaaaat----gttgattttaattgccttaattaatagccattgattttcattaaaaagaaatggaaggctcagatt 202  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35240507 ggaaaggaaattaaatgaaatagacaaaatttatgttgattttaattgccttaattaatagccattgattttcattaaaaagaaatggaaggctcagatt 35240408  T
Q  203 gtttcacaggagaaaacaggagaaaatttgactggagacaatcctttccc 252  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35240407 gcttcacaggagaaaacaggagaaaatttgactggagacaatcctttccc 35240358  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 35241102 - 35241173
Alignment:
Q  181 aaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaatttgactggagacaatcctttccc 252  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||    
T  35241102 aaagaaatggagggctcagattgcttcacaggagaaaacaggagaaaattggactggagacaatccattccc 35241173  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 11423778 - 11423887
Alignment:
Q  135 atgttgattttaattgccttaattaatagccattgattttcattaaaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaatttgac 234  Q
    |||||||||||||| |  || |||||||||| |||||||||||||||| ||| || | || |  ||||||||||||||||||||| | ||||| ||||||    
T  11423778 atgttgattttaat-gtgtttattaatagcctttgattttcattaaaaggaa-tgaagggttgtgattgtttcacaggagaaaactgcagaaattttgac 11423875  T
Q  235 tggagacaatcc 246  Q
      ||||||||||    
T  11423876 aagagacaatcc 11423887  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 31121215 - 31121266
Alignment:
Q  180 aaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaattt 231  Q
    |||||||||||| |||| |||||| ||||||||||||||| |||| ||||||    
T  31121215 aaaagaaatggacggctaagattgattcacaggagaaaactggaggaaattt 31121266  T

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Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 253 - 447
Target Start/End: Original strand, 38917825 - 38918019
Alignment:
Q  253 gttaaagagtgctaaatcagacaaaagtcattaaatacacgagtgaacattcaaaagtgtgtaaacatttatgaatggctccttccttcaaaaataattc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38917825 gttaaagagtgctaaatcagacaaaagtcattaaatacacgagtgaacatttaaaagtgtgtaaacatttatgaatggctccttccttcaaaaataattc 38917924  T
Q  353 taaataattacgaatgccatgcccaatttttcctttcttaattttcgtttgattaattcaaatggagagttgtgaatattctacttgctactaac 447  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  38917925 taaataattacgaatgccatgcccaatttttcctttattaattttcgttagattaattcaaatggaaagttgtgaatattctacttgctactaac 38918019  T

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Target: chr8 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 14111191 - 14110978
Alignment:
Q  10 catcatcaatatagatggtgttcactaggtagtgtt--tattattgaagaagatgaaacagttttgtgttttacagtagcttgtctctcgagggaagaag 107  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14111191 catcatcaatatagatggtgttcacttggtagtgttgttattattgaagaagatgaaacagttttgtgttttacagtagcttgtctctcgagggaagaag 14111092  T
Q  108 gaaaggaaattaaatgaaatagacaaaat----gttgattttaattgccttaattaatagccattgattttcattaaaaagaaatggaaggctcagattg 203  Q
    ||||| |||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||    
T  14111091 gaaag-aaattaaatgaaatagacaaaatttatgttgattttaattgccttaattaatagccattgattttcattaaaaagaaatgtatggttcagattg 14110993  T
Q  204 tttcacaggagaaaa 218  Q
     ||||||||||||||    
T  14110992 cttcacaggagaaaa 14110978  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 14112522 - 14112596
Alignment:
Q  180 aaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaatttgactggagacaatcctttcccgt 254  Q
    |||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  14112522 aaaagaaatggagggctcagattgcttcacaggagaaaacatgagaaaattggactggagacaatccattcccgt 14112596  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 40948579 - 40948525
Alignment:
Q  13 catcaatatagatggtgttcactaggtagtgt--ttattattgaagaagatgaaa 65  Q
    ||||||||||||||||||||||| ||| ||||  |||||||||||||||||||||    
T  40948579 catcaatatagatggtgttcactgggttgtgttgttattattgaagaagatgaaa 40948525  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 1962532 - 1962649
Alignment:
Q  135 atgttgattttaattgccttaattaatagccattgattttcattaaaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaatttgac 234  Q
    ||||||||||||||||  || ||||  |||| ||||| |||  | ||||| |||| | ||||  ||||| | ||||||||||||||||||||| ||||||    
T  1962532 atgttgattttaattgattttattataagccgttgatcttccattaaaaggaatgaagggctgtgattgctccacaggagaaaacaggagaaattttgac 1962631  T
Q  235 tggagacaatcctttccc 252  Q
    |||||||||||| |||||    
T  1962632 tggagacaatccattccc 1962649  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 180 - 253
Target Start/End: Complemental strand, 1962059 - 1961986
Alignment:
Q  180 aaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaatttgactggagacaatcctttcccg 253  Q
    ||||| |||||| ||||  ||||| | ||||||||||||| ||||||| |||||||||||||||||| ||||||    
T  1962059 aaaaggaatggagggctatgattgctccacaggagaaaactggagaaattttgactggagacaatccattcccg 1961986  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 25506284 - 25506233
Alignment:
Q  180 aaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaattt 231  Q
    |||||||||||| |||| |||||| ||||||||||||||| |||| ||||||    
T  25506284 aaaagaaatggacggctaagattgattcacaggagaaaactggaggaaattt 25506233  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 40396867 - 40396918
Alignment:
Q  180 aaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaattt 231  Q
    ||||| |||||| |||| ||||| ||||||||||||||||||||||||||||    
T  40396867 aaaaggaatggatggctaagattatttcacaggagaaaacaggagaaaattt 40396918  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 44087962 - 44087922
Alignment:
Q  212 gagaaaacaggagaaaatttgactggagacaatcctttccc 252  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  44087962 gagaaaacaggaggaaattggactggagacaatccattccc 44087922  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 246
Target Start/End: Original strand, 36071940 - 36072015
Alignment:
Q  170 attttcattaaaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaatttgactggagacaatcc 246  Q
    ||||||||||||||| |||||| |||||| |||| |||||| |||||||| |||| |||||| || ||||| |||||    
T  36071940 attttcattaaaaag-aatggagggctcaaattgcttcacacgagaaaactggaggaaatttaacgggagaaaatcc 36072015  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 14591890 - 14591839
Alignment:
Q  180 aaaagaaatggaaggctcagattgtttcacaggagaaaacaggagaaaattt 231  Q
    ||||| |||||| |||| ||||| ||||||||||||||||||||| ||||||    
T  14591890 aaaaggaatggatggctaagattatttcacaggagaaaacaggaggaaattt 14591839  T

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