View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_high_17 (Length: 421)

Name: NF18013_high_17
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_high_17
NF18013_high_17
[»] chr2 (3 HSPs)
chr2 (123-405)||(36078002-36078302)
chr2 (36-142)||(36078315-36078426)
chr2 (243-347)||(36074773-36074883)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 123 - 405
Target Start/End: Complemental strand, 36078302 - 36078002
Alignment:
Q  123 caaaaatcatgtgcctatctaacatacgattggtctgaaaataaagaagctagcccaccatttcctacttgcaacaaaattacaatgcatcaatgtgttg 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36078302 caaaaatcatgtgcctatctaacatacgattggtctgaaaataaagaagctagcccaccatttcctacttgcaacaaaattacaatgcatcaatgtgttg 36078203  T
Q  223 cacgtgcaatctccaactc------------------aaactttttagacatcaaattcatagattccatttttccacccatgaaaactagaataactat 304  Q
    |||||||||||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36078202 cacgtgcaatctccaactccgacattttgtcaccctcaaactttttagacatcaaattcatagattccatttttccacccatgaaaactagaataactat 36078103  T
Q  305 tccatataaataccactcccaacacattcaggtatattcaacaattcattagtcaaattcattatatgtattaacgtatcaaagaatgaacttggagaat 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  36078102 tccatataaataccactcccaacacattcaggtatattcaacaattcattagtcaaatccattatatgtattaacgtatcaaagaatgaacttggagaat 36078003  T
Q  405 g 405  Q
    |    
T  36078002 g 36078002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 36078426 - 36078315
Alignment:
Q  36 tatagtatagataaaagaggacaaatcgaatcgaatacttataagagac--atgtgagagtagacttcatacta---aaggtcaaagttcaacaaaaatc 130  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| ||||||   |||||||||||||||||||||||    
T  36078426 tatagtatagataaaagaggacaaatcgaattgaatacttataagagacatatgtgagagtagacttgatactaattaaggtcaaagttcaacaaaaatc 36078327  T
Q  131 atgtgcctatct 142  Q
    ||||||||||||    
T  36078326 atgtgcctatct 36078315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 36074883 - 36074773
Alignment:
Q  243 aactttttagacatcaaattcatagattccatttttccacccat--gaaaactagaa----taactattccatataaataccactcccaacacattcagg 336  Q
    |||||||||||||||| ||||||| ||| |||||| ||| ||||  |||||||||||    | |||| || |||||||||| ||||||||||||||||||    
T  36074883 aactttttagacatcacattcatatatttcattttcccaaccatatgaaaactagaactacttactaatctatataaatactactcccaacacattcagg 36074784  T
Q  337 tatattcaaca 347  Q
    |||||||||||    
T  36074783 tatattcaaca 36074773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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