View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_high_20 (Length: 390)

Name: NF18013_high_20
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_high_20
NF18013_high_20
[»] chr1 (4 HSPs)
chr1 (25-373)||(29820414-29820763)
chr1 (245-337)||(33717198-33717289)
chr1 (275-341)||(6263001-6263067)
chr1 (295-327)||(1498034-1498066)
[»] chr3 (2 HSPs)
chr3 (179-291)||(54644107-54644220)
chr3 (160-215)||(30421616-30421672)
[»] chr4 (1 HSPs)
chr4 (163-224)||(2888795-2888857)
[»] chr8 (2 HSPs)
chr8 (188-228)||(5455862-5455902)
chr8 (295-339)||(5055885-5055929)
[»] chr5 (4 HSPs)
chr5 (159-210)||(6522154-6522207)
chr5 (161-210)||(38726790-38726840)
chr5 (295-336)||(10839203-10839244)
chr5 (282-339)||(39513618-39513675)
[»] chr6 (2 HSPs)
chr6 (190-275)||(32996847-32996932)
chr6 (190-262)||(33965970-33966042)
[»] chr2 (1 HSPs)
chr2 (295-339)||(29363198-29363242)


Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 25 - 373
Target Start/End: Complemental strand, 29820763 - 29820414
Alignment:
Q  25 gatggcaggtgtatcctctgactctccagtgtaagtactatccttattagtgctaaaatgtttaa-tgtgtagatgtctcctctaactttttagctaaag 123  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||    
T  29820763 gatggcaggtgtatcctctgactctccggtgtaagtactatccttattagtgctaaaatgtttaaatgtgtagatatctcctctaacttttcagctaaag 29820664  T
Q  124 aaaatatacatgatagaaaattctataaagaaattgtagtatttaaacacgatttgtaatctgtaacctaagtttgaataatagaaaatcacagcagcca 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29820663 aaaatatacatgatagaaaattctataaagaaattgtagtatttaaatacgatttgtaatctgtaacctaagtttgaataatagaaaatcacagcagcca 29820564  T
Q  224 ctctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatctttgtgtattctctatttccctttttcgtatctgttttcttttaaaccag 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29820563 ctctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatctttgtgtattctctatttcccttttttgtatctgttttcttttaaaccag 29820464  T
Q  324 ggttgttgctctaacagtttcaatgtataggtatctctctctacgcttgg 373  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29820463 ggttgttgttctaacagtttcaatgtataggtatctctctctacgcttgg 29820414  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 33717289 - 33717198
Alignment:
Q  245 cacaattggtcgaactccgttgtcaaatctttgtgtattctctatttccctttttcgtatctgttttcttttaaaccagggttgttgctctaa 337  Q
    ||||||||||||| |||| |  ||||||||| |||| |||||| ||| | |||||||||||||||| ||||| ||| |||||||||| |||||    
T  33717289 cacaattggtcgagctccttgatcaaatctt-gtgtgttctctgtttgcatttttcgtatctgtttacttttgaactagggttgttgttctaa 33717198  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 6263001 - 6263067
Alignment:
Q  275 ttgtgtattctctatttccctttttcgtatctgttttcttttaaaccagggttgttgctctaacagt 341  Q
    |||||| |||||| ||| | |||||||||||| ||||||||| ||||||| |||||| |||||||||    
T  6263001 ttgtgtgttctctgtttgcgtttttcgtatctattttcttttgaaccaggattgttgttctaacagt 6263067  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 327
Target Start/End: Original strand, 1498034 - 1498066
Alignment:
Q  295 tttttcgtatctgttttcttttaaaccagggtt 327  Q
    |||||||||||||||||||||| ||||||||||    
T  1498034 tttttcgtatctgttttcttttgaaccagggtt 1498066  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 54644107 - 54644220
Alignment:
Q  179 gtaatctgtaac--ctaagtttgaataatagaaaatcacagcagccactctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatcttt 276  Q
    ||||||||||||  ||||| ||||||||||||||||||| |||||||||||  ||| ||||||| || |||||||||| ||| ||| |  ||||||  ||    
T  54644107 gtaatctgtaactcctaagcttgaataatagaaaatcactgcagccactctaaagtcagagacataggcacaattggttgaaatccatgatcaaat-att 54644205  T
Q  277 gtgtattctctattt 291  Q
    |||| ||||||||||    
T  54644206 gtgtgttctctattt 54644220  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 30421616 - 30421672
Alignment:
Q  160 tagtatttaaacacgatttgtaatctgtaacct-aagtttgaataatagaaaatcac 215  Q
    ||||||||||||||   |||||||||||||| | ||| |||||||||||||||||||    
T  30421616 tagtatttaaacacatgttgtaatctgtaactttaagcttgaataatagaaaatcac 30421672  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 2888857 - 2888795
Alignment:
Q  163 tatttaaacacgatttgtaatctgtaac-ctaagtttgaataatagaaaatcacagcagccac 224  Q
    ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||  ||||||||    
T  2888857 tatttaaacacaagttgtaatctgtaactctaagcttgaataatagaaaatcattgcagccac 2888795  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 5455862 - 5455902
Alignment:
Q  188 aacctaagtttgaataatagaaaatcacagcagccactctg 228  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  5455862 aacctaagtttgaataatagaaaatcaccgcaaccactctg 5455902  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 5055885 - 5055929
Alignment:
Q  295 tttttcgtatctgttttcttttaaaccagggttgttgctctaaca 339  Q
    |||||||||||| ||| ||||| |||||||||||||| |||||||    
T  5055885 tttttcgtatctttttacttttgaaccagggttgttgttctaaca 5055929  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 6522207 - 6522154
Alignment:
Q  159 gtagtatttaaacacgatttgtaatctgtaa--cctaagtttgaataatagaaa 210  Q
    ||||||||||||||| | ||||||| |||||  |||||||||||||||||||||    
T  6522207 gtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaa 6522154  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 38726840 - 38726790
Alignment:
Q  161 agtatttaaacacgatttgtaatctgtaacc-taagtttgaataatagaaa 210  Q
    ||||||||||||| | ||||||||| ||||| |||||||||||||||||||    
T  38726840 agtatttaaacacaagttgtaatctctaaccctaagtttgaataatagaaa 38726790  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 336
Target Start/End: Original strand, 10839203 - 10839244
Alignment:
Q  295 tttttcgtatctgttttcttttaaaccagggttgttgctcta 336  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  10839203 tttttcgtatctgttttctcttgaaccagggttgttgttcta 10839244  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 339
Target Start/End: Original strand, 39513618 - 39513675
Alignment:
Q  282 ttctctatttccctttttcgtatctgttttcttttaaaccagggttgttgctctaaca 339  Q
    |||||| ||| | |||||||||||||||| ||||| | | ||||||||||||||||||    
T  39513618 ttctctgtttgcgtttttcgtatctgtttgcttttgatctagggttgttgctctaaca 39513675  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 32996932 - 32996847
Alignment:
Q  190 cctaagtttgaataatagaaaatcacagcagccactctgtagtaagagacaaagacacaattggtcgaactccgttgtcaaatctt 275  Q
    ||||||||||||| |||||||||||| ||| | ||||| ||||  |||||| || ||||| | |||||||| |||  |||||||||    
T  32996932 cctaagtttgaattatagaaaatcactgcaacgactctatagtcggagacataggcacaactagtcgaacttcgtgatcaaatctt 32996847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 262
Target Start/End: Complemental strand, 33966042 - 33965970
Alignment:
Q  190 cctaagtttgaataatagaaaatcacagcagccactctgtagtaagagacaaagacacaattggtcgaactcc 262  Q
    |||||| ||||||||| ||||||||  | |||| |  |||||||||||| |||||||||||||  ||||||||    
T  33966042 cctaagcttgaataatcgaaaatcaatgtagcctcaatgtagtaagagataaagacacaattgaccgaactcc 33965970  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 29363198 - 29363242
Alignment:
Q  295 tttttcgtatctgttttcttttaaaccagggttgttgctctaaca 339  Q
    ||||||||||| |||| ||||| |||||||||||||| |||||||    
T  29363198 tttttcgtatccgtttacttttgaaccagggttgttgttctaaca 29363242  T

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