View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_25 (Length: 329)
Name: NF18013_high_25
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_25 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 9536083 - 9535879
Alignment:
| Q |
18 |
aagttcgctagaggatgggatgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9536083 |
aagttcgctagaggatgggatgaatagcgtttttcgtttttcaattttttttaggaatacatggattaaaaagagtatgactattgaatctgtgtttgat |
9535984 |
T |
|
| Q |
117 |
gatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatataaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9535983 |
gatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatacaaa |
9535884 |
T |
|
| Q |
217 |
tacat |
221 |
Q |
| |
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||||| |
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|
| T |
9535883 |
tacat |
9535879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 9535820 - 9535726
Alignment:
| Q |
223 |
ttctgttagatgtggaaggatttccaacaacacctctactcagaattttacattgattaacgtcaccataagagacaatataccacgttcttttctt |
319 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |||||||||| |
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| T |
9535820 |
ttctgctagatgtggaaggatttccaacaacacctctactcagaattttacattgattaatatcaccacaagagaca--ataccacattcttttctt |
9535726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 212
Target Start/End: Complemental strand, 27272356 - 27272207
Alignment:
| Q |
65 |
ttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtg |
163 |
Q |
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| T |
27272356 |
ttttgcaaaagcgtggattaacaagagtatgactattgaatttgtgtgcgacaatgataacaaaattaaaacaatgaaaatcaaataatattcaaagctg |
27272257 |
T |
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| Q |
164 |
aattgaga-atttaaatatttaatcttttagaacaaatcaacaatcaata |
212 |
Q |
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| T |
27272256 |
aattgagaggttcaaataatgaatcttatgaaacaaatcaataatcaata |
27272207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 168
Target Start/End: Complemental strand, 16192284 - 16192154
Alignment:
| Q |
40 |
aatagcgtttttcgtt-ttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaa |
137 |
Q |
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|||||| ||||||||| ||||||| |||||| ||||| |||||||| |||||||||||||| |||| |||| | |||||||||| |||| || ||||| |
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| T |
16192284 |
aatagcatttttcgttcttcaaaaggttttgcaaaaacgtggattaacaagagtatgactatcgaatttgtgcgtaatgatgataacaaaattaggacaa |
16192185 |
T |
|
| Q |
138 |
tgaatatcaaatatgattcaaaggtgaattg |
168 |
Q |
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||||||||||||| |||||||| |||||||| |
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| T |
16192184 |
tgaatatcaaataagattcaaatgtgaattg |
16192154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 212
Target Start/End: Complemental strand, 17350117 - 17349939
Alignment:
| Q |
38 |
tgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaa-aaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga |
134 |
Q |
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|||||| ||||||||||||| ||||| |||||| ||| | |||||||| |||||||||||||||||||| |||| || ||||||||| |||| ||||| |
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| T |
17350117 |
tgaataacgtttttcgtttttcaaaagattttgcaaaagcgtggattaacaaagagtatgactattgaatttgtgcttagtgatgataacaaaattaaga |
17350018 |
T |
|
| Q |
135 |
caatgaatatcaaatatgattcaaaggtgaattgagaa-tttaaatatttaatcttttagaacaaatcaacaatcaata |
212 |
Q |
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||||||| || || || ||||||||||||||||||||| || ||||| | | |||| || | |||||||||||||||| |
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| T |
17350017 |
caatgaaaataaactaagattcaaaggtgaattgagaagttcaaataatgactcttataaagaaaatcaacaatcaata |
17349939 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 6104 - 6241
Alignment:
| Q |
54 |
ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatg |
152 |
Q |
| |
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||||||||| |||||||||||| |||||| | || | |||||||||||||| |||| |||||||||||| |||| |||||||||||||| |||||| | |
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| T |
6104 |
ttttcaaaaggttttgcgaaaacgtggattcacaaaactatgactattgaatttgtgcatgatgatgataacaaaattaagacaatgaataacaaataag |
6203 |
T |
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| Q |
153 |
attcaaaggtgaattgaga-atttaaatatttaatctt |
189 |
Q |
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|||||||| | |||||||| ||||||||| | |||||| |
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| T |
6204 |
attcaaagctaaattgagagatttaaataatgaatctt |
6241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 23142308 - 23142442
Alignment:
| Q |
38 |
tgaatagcgtttttcg--ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga |
134 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||| | |||||||| | |||| || |||||||| |||| |||||||||||| |||| ||||| |
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| T |
23142308 |
tgaatagcgtttttcggtttttaaaaggtttttgcgaaagcgtggattaactaaagtacgattattgaatttgtgcgtgatgatgataacaaaattaaga |
23142407 |
T |
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| Q |
135 |
caatgaatatcaaatatgattcaaaggtgaattga |
169 |
Q |
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|||||||||||||||| ||||||||| |||||||| |
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| T |
23142408 |
caatgaatatcaaataagattcaaagttgaattga |
23142442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 3462253 - 3462372
Alignment:
| Q |
54 |
ttttcaaaattttttgcgaaaacatggattaaaaagagtatgacta-ttgaatctgtgtttgatgatgataaaaaact-aagacaatgaatatcaaatat |
151 |
Q |
| |
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||||||||| |||||||||| | | |||||| ||||||||||||| ||| || |||| |||||||||||| ||| | |||||||||||||||||||| |
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| T |
3462253 |
ttttcaaaaggttttgcgaaagcgtagattaacaagagtatgactaattgcatttgtgcgtgatgatgataacaaaatcaagacaatgaatatcaaataa |
3462352 |
T |
|
| Q |
152 |
gattcaaaggtgaattgaga |
171 |
Q |
| |
|
|||| ||||||||||||||| |
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|
| T |
3462353 |
gatttaaaggtgaattgaga |
3462372 |
T |
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