View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18013_high_27 (Length: 272)
Name: NF18013_high_27
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_27 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 31097883 - 31097612
Alignment:
| Q |
1 |
tttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgagacgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31097883 |
tttggatcgcagagaaaaaagtaggtgattggtgtttccaagcacagtaattgctacaagatagtttaaaggtaatggaagcattgagaatgcgagacgg |
31097784 |
T |
|
| Q |
101 |
attggttggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatccacat |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31097783 |
attggtcggggtagaggtagtggtggctatagcagcgataatgagaatgttacgttgttaagctttctccagttgatgcctttacaaagtaaatccacat |
31097684 |
T |
|
| Q |
201 |
catggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtctaatag |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31097683 |
catggagacagcaaggcaagtggatcaaggcttgatttgagaactgagaatgtgaggtggctggtttaatag |
31097612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University