View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_28 (Length: 261)
Name: NF18013_high_28
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 31097635 - 31097392
Alignment:
| Q |
18 |
aatgtgaggtggctggtctaatagtaatgatatttttatcaagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaa |
117 |
Q |
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| T |
31097635 |
aatgtgaggtggctggtttaatagtaatgatatttttatcaagtcagtttttatatcaagatttaattaacaatcagtttgatatttttaaattgataaa |
31097536 |
T |
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| Q |
118 |
gnnnnnnnnacttattctcaatctttatccctttagagttctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagacta |
217 |
Q |
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| T |
31097535 |
gttttttttacttattctcaatctttatccctttagagttctatatactgatcaaaggtagcaagaattcaaccgatcaacaattacctacacaagacta |
31097436 |
T |
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| Q |
218 |
atcatgatcagttgattgtgtggaactgatgatgtccatctcat |
261 |
Q |
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| T |
31097435 |
atcatgatcagttgattgtgtggaactaatgaggtccacctcat |
31097392 |
T |
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