View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_high_29 (Length: 256)

Name: NF18013_high_29
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_high_29
NF18013_high_29
[»] chr7 (21 HSPs)
chr7 (16-119)||(26633293-26633396)
chr7 (16-118)||(7366618-7366720)
chr7 (18-121)||(9479055-9479158)
chr7 (16-119)||(36438382-36438485)
chr7 (18-115)||(40738024-40738121)
chr7 (18-120)||(18895430-18895532)
chr7 (16-119)||(26282573-26282676)
chr7 (18-119)||(32956704-32956806)
chr7 (16-119)||(1365939-1366042)
chr7 (16-119)||(40001727-40001830)
chr7 (16-119)||(30739052-30739156)
chr7 (16-116)||(42311943-42312042)
chr7 (136-237)||(7366504-7366604)
chr7 (16-119)||(33909993-33910097)
chr7 (17-119)||(36796404-36796507)
chr7 (17-119)||(44894061-44894164)
chr7 (17-107)||(6380116-6380206)
chr7 (17-111)||(18015614-18015708)
chr7 (19-107)||(41908119-41908208)
chr7 (136-168)||(40738143-40738175)
chr7 (51-111)||(40841312-40841372)
[»] chr5 (19 HSPs)
chr5 (16-116)||(17325777-17325877)
chr5 (16-118)||(138075-138177)
chr5 (16-119)||(16515454-16515557)
chr5 (17-116)||(27351282-27351381)
chr5 (16-119)||(43511548-43511651)
chr5 (32-106)||(10033489-10033563)
chr5 (18-119)||(5829315-5829416)
chr5 (16-107)||(20975927-20976018)
chr5 (16-119)||(42291912-42292015)
chr5 (16-119)||(3349760-3349862)
chr5 (16-119)||(10591304-10591407)
chr5 (16-111)||(40779130-40779225)
chr5 (16-111)||(4734613-4734708)
chr5 (16-119)||(17513967-17514070)
chr5 (18-75)||(931354-931411)
chr5 (18-119)||(29156120-29156221)
chr5 (16-117)||(40956245-40956346)
chr5 (16-119)||(13474559-13474663)
chr5 (16-86)||(18873416-18873490)
[»] chr2 (23 HSPs)
chr2 (16-119)||(39081328-39081431)
chr2 (16-122)||(13997241-13997347)
chr2 (17-119)||(1418840-1418941)
chr2 (16-116)||(29480668-29480768)
chr2 (18-115)||(36059938-36060035)
chr2 (41-113)||(32186206-32186278)
chr2 (16-111)||(27302559-27302654)
chr2 (17-111)||(31273198-31273291)
chr2 (17-119)||(42411590-42411692)
chr2 (17-107)||(45042331-45042421)
chr2 (18-119)||(21747263-21747364)
chr2 (16-113)||(38599338-38599435)
chr2 (16-119)||(1226298-1226399)
chr2 (16-119)||(15457430-15457533)
chr2 (16-119)||(19367450-19367554)
chr2 (17-116)||(45618909-45619009)
chr2 (17-116)||(2063738-2063837)
chr2 (17-107)||(13020365-13020455)
chr2 (16-119)||(18916085-18916188)
chr2 (16-119)||(38985740-38985842)
chr2 (17-119)||(34061888-34061990)
chr2 (18-78)||(18482540-18482600)
chr2 (136-168)||(36060058-36060090)
[»] chr1 (21 HSPs)
chr1 (16-119)||(17674385-17674487)
chr1 (16-119)||(24556736-24556839)
chr1 (16-112)||(22386868-22386964)
chr1 (16-119)||(37873793-37873897)
chr1 (18-109)||(38263804-38263895)
chr1 (16-114)||(42740045-42740143)
chr1 (27-119)||(26486407-26486499)
chr1 (16-104)||(44836752-44836840)
chr1 (16-119)||(12971336-12971439)
chr1 (17-119)||(27703561-27703663)
chr1 (18-120)||(15441219-15441321)
chr1 (57-237)||(13121749-13121925)
chr1 (16-103)||(50371080-50371167)
chr1 (28-111)||(31369432-31369515)
chr1 (17-107)||(10109662-10109752)
chr1 (16-59)||(13120897-13120940)
chr1 (42-119)||(1269489-1269566)
chr1 (18-119)||(5560413-5560514)
chr1 (18-119)||(12884170-12884272)
chr1 (136-237)||(22386985-22387085)
chr1 (16-119)||(50552424-50552528)
[»] chr6 (16 HSPs)
chr6 (30-119)||(7341139-7341228)
chr6 (16-107)||(30915397-30915488)
chr6 (16-107)||(3748599-3748690)
chr6 (40-119)||(6294209-6294288)
chr6 (16-119)||(6360690-6360793)
chr6 (16-118)||(19231544-19231645)
chr6 (16-119)||(12614747-12614850)
chr6 (18-78)||(350385-350445)
chr6 (16-119)||(2618285-2618388)
chr6 (16-119)||(29308498-29308601)
chr6 (16-105)||(628126-628215)
chr6 (18-111)||(1093073-1093166)
chr6 (16-119)||(1690664-1690767)
chr6 (16-119)||(31860933-31861034)
chr6 (18-119)||(57617-57719)
chr6 (136-168)||(7341094-7341126)
[»] chr4 (15 HSPs)
chr4 (16-119)||(22423614-22423717)
chr4 (16-119)||(35654011-35654114)
chr4 (18-118)||(43154821-43154921)
chr4 (16-119)||(24449054-24449159)
chr4 (16-111)||(21791578-21791673)
chr4 (17-117)||(5545261-5545361)
chr4 (18-112)||(10575556-10575647)
chr4 (16-119)||(45172676-45172778)
chr4 (16-119)||(27632327-27632431)
chr4 (16-111)||(32130821-32130916)
chr4 (16-119)||(55134138-55134241)
chr4 (17-107)||(23426198-23426288)
chr4 (17-119)||(53011642-53011744)
chr4 (16-107)||(28463619-28463710)
chr4 (136-168)||(22423567-22423599)
[»] chr3 (26 HSPs)
chr3 (18-118)||(42009295-42009395)
chr3 (18-119)||(51146867-51146968)
chr3 (16-119)||(36538217-36538320)
chr3 (16-119)||(7766991-7767096)
chr3 (16-118)||(27303118-27303220)
chr3 (16-118)||(50677345-50677447)
chr3 (16-119)||(54430482-54430585)
chr3 (18-119)||(46904662-46904773)
chr3 (17-119)||(21596265-21596367)
chr3 (17-119)||(23164604-23164706)
chr3 (16-119)||(48627060-48627163)
chr3 (17-119)||(21784816-21784918)
chr3 (16-117)||(51939587-51939688)
chr3 (16-119)||(41707086-41707190)
chr3 (16-120)||(43905874-43905978)
chr3 (17-119)||(46791729-46791832)
chr3 (17-107)||(28132767-28132857)
chr3 (17-118)||(52655155-52655257)
chr3 (17-119)||(8364101-8364204)
chr3 (16-107)||(13401401-13401492)
chr3 (16-107)||(25599117-25599208)
chr3 (16-119)||(40152161-40152264)
chr3 (17-107)||(24252563-24252652)
chr3 (16-109)||(1649862-1649955)
chr3 (16-119)||(29387785-29387889)
chr3 (136-168)||(46904612-46904644)
[»] chr8 (12 HSPs)
chr8 (16-119)||(3628778-3628881)
chr8 (16-119)||(35874854-35874959)
chr8 (17-119)||(32098210-32098312)
chr8 (16-119)||(34523982-34524085)
chr8 (16-119)||(39697969-39698072)
chr8 (16-119)||(23567305-23567408)
chr8 (28-66)||(36515191-36515229)
chr8 (16-119)||(18420640-18420744)
chr8 (16-111)||(5869353-5869446)
chr8 (16-107)||(30915319-30915410)
chr8 (16-107)||(43926354-43926445)
chr8 (16-77)||(3471572-3471633)
[»] scaffold0126 (1 HSPs)
scaffold0126 (16-119)||(16639-16743)


Alignment Details
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 26633396 - 26633293
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  26633396 tcaaattgactgattaagtgattatacaaattgatggtggttttatagcatcaaatttatgtccagaaagtagaactagagtctagaaaaaactcatacg 26633297  T
Q  116 tgta 119  Q
    ||||    
T  26633296 tgta 26633293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 7366720 - 7366618
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  7366720 tcaaattgacaaattaagtaattattcaaattgatggtggtttaatatcatcaaatttatgtccagaaagtggaactagagtatagaaaaaactcatacg 7366621  T
Q  116 tgt 118  Q
    |||    
T  7366620 tgt 7366618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 9479158 - 9479055
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||    
T  9479158 aaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactagagtttagaaaaaaatcatacgtg 9479059  T
Q  118 tatt 121  Q
    ||||    
T  9479058 tatt 9479055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 36438382 - 36438485
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||| ||||||| ||||||||| |||||||||||||||||     
T  36438382 tcaaattgactgattaagtgattatacaaattgatagtggtttgatagcatcaaatttatgtccagaaagtagaactagagcctagaaaaaactcatacc 36438481  T
Q  116 tgta 119  Q
    ||||    
T  36438482 tgta 36438485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 40738024 - 40738121
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  40738024 aaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtcaaaaaagtagaactagagtttagaaaaaactcatacg 40738121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 18895430 - 18895532
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||| ||||||| |||||| || ||||||| ||||||||||||||||||| |  |||| ||||| ||||||||||||||||||||||||    
T  18895430 aaattgactgattaattgattatacaaattaatagtggtttgataacatcaaatttatgtctaataagtagaactcgagtctagaaaaaactcatacgtg 18895529  T
Q  118 tat 120  Q
    |||    
T  18895530 tat 18895532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 26282573 - 26282676
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||  |||||| ||||||||||||||||| |||    
T  26282573 tcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtgcagataggagaactaaagtctagaaaaaactcaaacg 26282672  T
Q  116 tgta 119  Q
    ||||    
T  26282673 tgta 26282676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 32956806 - 32956704
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtct-agaaaaaactcatacgt 116  Q
    ||||||||||||||| |||||||  ||||||  |||||||| ||| ||||| ||||||||| ||||||  |||||||||||| | |||||||||| ||||    
T  32956806 aaattgactgattaaatgattataaaaattgggggtggtttgatagcatcagatttatgtccagaaaggagaactagagtctaaaaaaaaactcaaacgt 32956707  T
Q  117 gta 119  Q
    |||    
T  32956706 gta 32956704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 1366042 - 1365939
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| ||  |||||| ||||||||| ||||||| |||    
T  1366042 tcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagataggagaactaaagtctagaagaaactcaaacg 1365943  T
Q  116 tgta 119  Q
    ||||    
T  1365942 tgta 1365939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 40001727 - 40001830
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||  |||||| |||||||||||| |||| |||    
T  40001727 tcaaattgactgattaagtgattatacaaattggaggtggtttgatagtaccagatttatgttcagatagaagaactaaagtctagaaaaacctcaaacg 40001826  T
Q  116 tgta 119  Q
    ||||    
T  40001827 tgta 40001830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 30739156 - 30739052
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa-aaaactcatac 114  Q
    |||||||||||||||||||||||||  ||||||| | |||||| ||| ||||  ||||||||| ||||||  ||| | || ||||||| |||||||| ||    
T  30739156 tcaaattgactgattaagtgattataaaaattgaagatggtttgatagcatccgatttatgtccagaaaggagaattggaatctagaaaaaaactcaaac 30739057  T
Q  115 gtgta 119  Q
    |||||    
T  30739056 gtgta 30739052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 42312042 - 42311943
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||| || |||||||||| ||||| || ||| ||||  |||||||| ||||||||| |||||   ||| |||||||||||||||||||| |||    
T  42312042 tcaaattgactaatcaagtgattatacaaatcgagggtagtttg-taacatcagatttatgtccagaaaagagaattagagtctagaaaaaactcaaacg 42311944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 237
Target Start/End: Complemental strand, 7366604 - 7366504
Alignment:
Q  136 gtaacatataattttttaatttaagtgggggtgtgggattataannnnnnnngaggcccatagtttttagagacttgattcggtaacgcttcttgcactc 235  Q
    |||||||||||| |||||||||||||||||||| || |||||||         ||||||||| ||||||||| || | ||||||| | ||||||||||||    
T  7366604 gtaacatataatattttaatttaagtgggggtg-ggcattataatttgtttttaggcccataatttttagaggctcggttcggtagcacttcttgcactc 7366506  T
Q  236 cc 237  Q
    ||    
T  7366505 cc 7366504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 33910097 - 33909993
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatac 114  Q
    |||||||||||||||||| |||||| ||||||   |||| ||| |||  |||| ||||||||  | ||||  |||||||||||||| |||||||||| ||    
T  33910097 tcaaattgactgattaagcgattatacaaattaggggtgatttgataggatcagatttatgtacaaaaaggagaactagagtctagaaaaaaactcaaac 33909998  T
Q  115 gtgta 119  Q
    |||||    
T  33909997 gtgta 33909993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 36796404 - 36796507
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactag-agtctagaaaaaactcatacg 115  Q
    |||||||||||||||||| ||||| |||||| | ||| |||| |||  |||  ||||||||  | ||||  ||||||| ||||||||||||||||| |||    
T  36796404 caaattgactgattaagttattatacaaattaagggtagtttgataggatccgatttatgtacaaaaaggagaactagaagtctagaaaaaactcaaacg 36796503  T
Q  116 tgta 119  Q
    ||||    
T  36796504 tgta 36796507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 44894061 - 44894164
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatacg 115  Q
    |||||||| ||||||||||||||| ||||||   ||||||||||||  |||  ||||||||  | ||||  |||||| ||||||| |||||||||| |||    
T  44894061 caaattgattgattaagtgattatacaaattaggggtggtttaataggatccgatttatgtacaaaaagaagaactatagtctagaaaaaaactcaaacg 44894160  T
Q  116 tgta 119  Q
    ||||    
T  44894161 tgta 44894164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 6380116 - 6380206
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||| ||||||||||||||| ||||||   |||||||| |||  |||| ||| ||||  | ||||  ||||||||||||||||||||    
T  6380116 caaattgattgattaagtgattatacaaattaggggtggtttgataggatcagattcatgtacaaaaagaagaactagagtctagaaaaaa 6380206  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 18015614 - 18015708
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    |||||||| ||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||   |||||||||||||||||||||||    
T  18015614 caaattgattgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggaaaactagagtctagaaaaaactca 18015708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 41908208 - 41908119
Alignment:
Q  19 aattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtg-gaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||| | |||||||  |||||||| | | ||||| ||||||||| | ||| || |||| |||||| ||||||||    
T  41908208 aattgactgattaagtgattgtacaaattggaggtggtttgaaagcatcagatttatgtccaaaaaatgagaaccagagtcaagaaaaaa 41908119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 40738143 - 40738175
Alignment:
Q  136 gtaacatataattttttaatttaagtgggggtg 168  Q
    ||||||| |||||||||||||||||||||||||    
T  40738143 gtaacatgtaattttttaatttaagtgggggtg 40738175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 40841312 - 40841372
Alignment:
Q  51 ggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    |||||||| ||||||||| ||||||||| | ||||   || ||||||||||||||||||||    
T  40841312 ggtggtttgataacatcatatttatgtccaaaaagaataattagagtctagaaaaaactca 40841372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 17325877 - 17325777
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  17325877 tcaaattgactgattaagtgattattcaaatcgatggtagtttaatagcatcaaatttatgtccagaaagtggaactagagtctaaaaaaaactcatacg 17325778  T
Q  116 t 116  Q
    |    
T  17325777 t 17325777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 138177 - 138075
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||   ||||| ||||||||||||||||||||||||||||    
T  138177 tcaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccgaaaagtagaactagagtctagaaaaaactcatacg 138078  T
Q  116 tgt 118  Q
    |||    
T  138077 tgt 138075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 16515557 - 16515454
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||| |||||| ||| || ||||| ||||||||    
T  16515557 tcaaattgattgattaagtgattattaaaattgatggtgttttaatagcatcaaatttatgtctagaaagtagaactaaagtttaaaaaaagctcatacg 16515458  T
Q  116 tgta 119  Q
    ||||    
T  16515457 tgta 16515454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 27351381 - 27351282
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    ||||||||||||||||||| |||| |||||||  |||||||| ||| || |||||||||||  ||||||  ||||||||||||||||||| |||| ||||    
T  27351381 caaattgactgattaagtggttatacaaattggaggtggtttgatagcaccaaatttatgttcagaaaggagaactagagtctagaaaaatctcaaacgt 27351282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 43511651 - 43511548
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||| ||| ||  |||||| ||||||||||||||||| |||    
T  43511651 tcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtccagataggagaactaaagtctagaaaaaactcaaacg 43511552  T
Q  116 tgta 119  Q
    ||||    
T  43511551 tgta 43511548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 106
Target Start/End: Complemental strand, 10033563 - 10033489
Alignment:
Q  32 agtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaa 106  Q
    ||||||||| ||||||||||| ||||| ||| ||||||||||||||  ||||||| |||||||||||||||||||    
T  10033563 agtgattatacaaattgatgggggtttgatagcatcaaatttatgtacagaaagtagaactagagtctagaaaaa 10033489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 5829416 - 5829315
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||||||||||| |||||||| | |||||| |||  | || ||||||||||||| ||  |||||| |||||| |||||||||| |||||    
T  5829416 aaattgactgattaagtgattatacaaattgaggttggtttgatagtaccagatttatgtcaagataggagaactaaagtctataaaaaactcaaacgtg 5829317  T
Q  118 ta 119  Q
    ||    
T  5829316 ta 5829315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 20976018 - 20975927
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    ||||||||||||||||| ||||||| ||||||| ||||||||| |||  | |||||||||||||||| |   |||||| |||||||||||||    
T  20976018 tcaaattgactgattaaatgattatacaaattggtggtggtttgatagtaccaaatttatgtcaagataagagaactaaagtctagaaaaaa 20975927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 42291912 - 42292015
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||| |||  | |||||||||||| ||| ||  |||||| ||| ||||||||| ||| |||    
T  42291912 tcaaattgactgattaagtgattatacaaattggtggtgatttgatagtaccaaatttatgtccagataggagaactaaagtttagaaaaaagtcaaacg 42292011  T
Q  116 tgta 119  Q
    ||||    
T  42292012 tgta 42292015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 3349760 - 3349862
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||| ||||||| ||||| | ||||||| ||   | |||||||||||| ||| ||  |||||| ||||||||||||||||| |||    
T  3349760 tcaaattgactgattaagtcattattccaattggtagtggtttgatgt-accaaatttatgtccagataggagaactaaagtctagaaaaaactcaaacg 3349858  T
Q  116 tgta 119  Q
    ||||    
T  3349859 tgta 3349862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 10591304 - 10591407
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||| ||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||  |||||| ||||||||||||||||| |||    
T  10591304 tcaaattaactgattaagtgattatacaaattgggggtggtttgatagtaccatatttatgttcagataggagaactaaagtctagaaaaaactcaaacg 10591403  T
Q  116 tgta 119  Q
    ||||    
T  10591404 tgta 10591407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 40779225 - 40779130
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    ||||||||||| |||||  |||||| |||||||  | | |||| ||||||||||||||||||  ||||||  |||||||| |||||||||||||||    
T  40779225 tcaaattgacttattaaacgattatacaaattggggatagtttgataacatcaaatttatgttcagaaaggagaactagactctagaaaaaactca 40779130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 4734613 - 4734708
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    ||||||||| |||| ||| |||||| ||||||| ||||||||| |||  | || ||||||||| ||| ||  |||||| |||||||||||||||||    
T  4734613 tcaaattgagtgatcaagggattatacaaattggtggtggtttgatagtaccagatttatgtccagataggagaactaaagtctagaaaaaactca 4734708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 17513967 - 17514070
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||||  ||||||||  ||  | || |||||| || ||| ||  |||||| |||||||||||| |||| |||    
T  17513967 tcaaattgactgattaagtgattatacaaattgggggtggtttgttagtaccagatttatatccagataggagaactaaagtctagaaaaacctcaaacg 17514066  T
Q  116 tgta 119  Q
    ||||    
T  17514067 tgta 17514070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 931411 - 931354
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttat 75  Q
    ||||||||||||||||||||||| |||||||   ||| ||||||| ||||||||||||    
T  931411 aaattgactgattaagtgattatacaaattgggtgtgatttaatagcatcaaatttat 931354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 29156221 - 29156120
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||||||||||| ||||||   |||||||| |||  | || ||||||||  ||| ||   ||||| ||||||||||||||||| |||||    
T  29156221 aaattgactgattaagtgattatacaaattaggggtggtttgatagtaccagatttatgttcagataggataactatagtctagaaaaaactcaaacgtg 29156122  T
Q  118 ta 119  Q
    ||    
T  29156121 ta 29156120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 40956346 - 40956245
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||| | ||||||||||||||| |||||||  |   |||| ||  ||||| ||||||||| | ||||  |||||||||||||||||||||||| |||    
T  40956346 tcaaattaaatgattaagtgattatacaaattggagaatgtttgattgcatcagatttatgtccacaaaggagaactagagtctagaaaaaactcaaacg 40956247  T
Q  116 tg 117  Q
    ||    
T  40956246 tg 40956245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 13474663 - 13474559
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaagtggaactagagtctag-aaaaaactcata 113  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| ||||  |||||||||| ||| |||||||||| |    
T  13474663 tcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaag-agaactagagtttagaaaaaaactcaaa 13474565  T
Q  114 cgtgta 119  Q
    ||||||    
T  13474564 cgtgta 13474559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 18873490 - 18873416
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaatt----gatggtggtttaataacatcaaatttatgtcaagaaagt 86  Q
    |||||||| ||||||||||| |||| ||||||    ||||||||||| ||| ||||||||||||||  |||||||    
T  18873490 tcaaattggctgattaagtggttatacaaattaattgatggtggtttgatagcatcaaatttatgttcagaaagt 18873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 39081431 - 39081328
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||    
T  39081431 tcaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtaaaactagagtctagaaaaaactcatacg 39081332  T
Q  116 tgta 119  Q
    ||||    
T  39081331 tgta 39081328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 13997347 - 13997241
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||| ||||||||||||| |||||||||||||    
T  13997347 tcaaattgactcattaagtgattattcaaattgacggtggttcaatagcatcaaatttatgtccagaaagtgaaactagagtctaggaaaaactcatacg 13997248  T
Q  116 tgtattg 122  Q
    |||||||    
T  13997247 tgtattg 13997241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 1418941 - 1418840
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| | ||||| |||||||||||||||||||||||||||||    
T  1418941 caaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaa-ttatgtctaaaaagtagaactagagtctagaaaaaactcatacgt 1418843  T
Q  117 gta 119  Q
    |||    
T  1418842 gta 1418840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 29480668 - 29480768
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||| |||||| |||||||    
T  29480668 tcaaattgactgaataagtgtttattcaaattgatggtggtttaatagcatcaaatttatgtccagaaagttgaactaaagtctaaaaaaaaatcatacg 29480767  T
Q  116 t 116  Q
    |    
T  29480768 t 29480768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 36059938 - 36060035
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||| | ||||| |||||||||||||||||||||| |||||    
T  36059938 aaattaactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttttgtctaaaaagtagaactagagtctagaaaaaacttatacg 36060035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 113
Target Start/End: Original strand, 32186206 - 32186278
Alignment:
Q  41 tcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcata 113  Q
    |||| ||||||||||||| ||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  32186206 tcaatttgatggtggtttgatagcatcaaatttatgtctaaaaagtagaactagagtctagaaaaaactcata 32186278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 27302559 - 27302654
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    |||||||||| |||||||||||||| |||||||| |||| |||  || |||| ||||| |||| ||| ||  ||| ||||||||||||||||||||    
T  27302559 tcaaattgaccgattaagtgattatacaaattgagggtgatttggtagcatcgaatttttgtccagacagaagaattagagtctagaaaaaactca 27302654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 31273198 - 31273291
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    |||||||||||||||| ||||||| |||||||  |||||||| ||||||||||||||| ||| ||||||  || || |||| || ||||||||||    
T  31273198 caaattgactgattaaatgattatacaaattgg-ggtggtttgataacatcaaatttaagtccagaaaggagagctggagtatacaaaaaactca 31273291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 42411590 - 42411692
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    |||||||||| ||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||||||||||||||| ||||    
T  42411590 caaattgactaattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctagaaaaaactcaaacgt 42411689  T
Q  117 gta 119  Q
    |||    
T  42411690 gta 42411692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 45042421 - 45042331
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  |||||||||||||    ||||  ||||||||||||||||||||    
T  45042421 caaattgactgattaagtgattatacaaattaggggtggtttgataggatcaaatttatgtacgaaaagaagaactagagtctagaaaaaa 45042331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 21747263 - 21747364
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||  |||||| |||||||||||| |||| |||||    
T  21747263 aaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgttcagatagaagaactaaagtctagaaaaacctcaaacgtg 21747362  T
Q  118 ta 119  Q
    ||    
T  21747363 ta 21747364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 38599435 - 38599338
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcata 113  Q
    ||||||||| ||||||||||||||| |||||||||  || ||| ||| |||||||||||| || | ||| | ||||| ||||  ||||||||||||||    
T  38599435 tcaaattgattgattaagtgattatacaaattgataatgatttgatagcatcaaatttatatccataaaatagaacttgagttaagaaaaaactcata 38599338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 1226298 - 1226399
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    |||||||| |||||| |||||||||  ||||||| ||||||||  || ||||| ||||||||| |  |||  ||| |||||||||||||||||||| |||    
T  1226298 tcaaattgtctgattgagtgattatataaattgagggtggtttggtagcatcagatttatgtcca--aaggagaattagagtctagaaaaaactcaaacg 1226395  T
Q  116 tgta 119  Q
    ||||    
T  1226396 tgta 1226399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 15457533 - 15457430
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaaga-aagtggaactagagtctagaaaaaactcatac 114  Q
    ||||||||||||||||||||||||| |||||||  ||| |||| |||  | || |||||||||  || |||| |||||| ||||||||||||||||| ||    
T  15457533 tcaaattgactgattaagtgattatacaaattgggggtagtttgatagtaccagatttatgtccggataagt-gaactaaagtctagaaaaaactcaaac 15457435  T
Q  115 gtgta 119  Q
    |||||    
T  15457434 gtgta 15457430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 19367450 - 19367554
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatac 114  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||||| |||||||||| ||    
T  19367450 tcaaattgactgattaagtgattatacaaattaggggtggtttgatagaatccgatttatgtacaaaaaggagaactagagtctagaaaaaaactcaaac 19367549  T
Q  115 gtgta 119  Q
    |||||    
T  19367550 gtgta 19367554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 45619009 - 45618909
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactag-agtctagaaaaaactcatacg 115  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  ||||||| ||||||||||||||||| |||    
T  45619009 caaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagaagtctagaaaaaactcaaacg 45618910  T
Q  116 t 116  Q
    |    
T  45618909 t 45618909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 2063837 - 2063738
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  || | ||||||||  | ||||   |||||||||||| |||||||||| ||||    
T  2063837 caaattgactgattaagtgattatacaaattaggggtggtttgataggattatatttatgtacaaaaaggaaaactagagtctaaaaaaaactcaaacgt 2063738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 13020455 - 13020365
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| ||||  ||||||||||||||||||||    
T  13020455 caaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaag-agaactagagtctagaaaaaa 13020365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 18916085 - 18916188
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| ||||||||||||||| |||||||  | |||||| |||  | || ||||||||| |||  |  |||||| |||||||||||| |||| |||    
T  18916085 tcaaattgattgattaagtgattatacaaattggggatggtttgatagtaccagatttatgtccagattgaagaactaaagtctagaaaaacctcaaacg 18916184  T
Q  116 tgta 119  Q
    ||||    
T  18916185 tgta 18916188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 38985740 - 38985842
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| ||||||| ||||||| |||||||  |||||||| |||  | |||||||||||| ||| ||  ||| || ||| ||||||||||||| |||    
T  38985740 tcaaattgattgattaaatgattatacaaattggaggtggtttgatagtaccaaatttatgtccagataggagaa-taaagtttagaaaaaactcaaacg 38985838  T
Q  116 tgta 119  Q
    ||||    
T  38985839 tgta 38985842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 34061888 - 34061990
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    |||||||||||||||||| || || ||||||   |||||||| |||  | || ||||||||  | ||||  |||||| |||||| |||||||||||||||    
T  34061888 caaattgactgattaagtaatcatacaaattatgggtggtttgataggaccagatttatgtacaaaaagaagaactatagtctaaaaaaaactcatacgt 34061987  T
Q  117 gta 119  Q
    |||    
T  34061988 gta 34061990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 18482540 - 18482600
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtc 78  Q
    |||||||||||||||| |||||| |||||||  ||| ||||  || |||||||||||||||    
T  18482540 aaattgactgattaagcgattatacaaattgggggtagtttgttagcatcaaatttatgtc 18482600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Original strand, 36060058 - 36060090
Alignment:
Q  136 gtaacatataattttttaatttaagtgggggtg 168  Q
    ||||||| |||||||||||||||||||||||||    
T  36060058 gtaacatgtaattttttaatttaagtgggggtg 36060090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 17674385 - 17674487
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||| |||||||||||||    
T  17674385 tcaaattgactgattaagtgattattcaaattgatggtggtttaatagcatcaaatttatatctagaaagtgaaactagagtctag-aaaaactcatacg 17674483  T
Q  116 tgta 119  Q
    ||||    
T  17674484 tgta 17674487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 24556839 - 24556736
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  24556839 tcaaattgacttattaagtgattattcaaattgatggtggtttaatagcaccaaatttatgttgagaaagtggaattagagtctagaaaaaactcatacg 24556740  T
Q  116 tgta 119  Q
    ||||    
T  24556739 tgta 24556736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 22386868 - 22386964
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcat 112  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  22386868 tcaaattgactgattaagtgattgttcaaattgatggtggttaaatagcatcaaatttatgtccagacagtggaactagagtctagaaaaaactcat 22386964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 37873793 - 37873897
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatac 114  Q
    ||||||| ||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||| |||||||||||||    
T  37873793 tcaaattaactgattaagtgactatacaaattgatggtggtttgatagcatcaaatttatgtctagaaagtagaactagagtctagaaaaaaactcatac 37873892  T
Q  115 gtgta 119  Q
    |||||    
T  37873893 gtgta 37873897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 38263895 - 38263804
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaact 109  Q
    ||||||||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||    
T  38263895 aaattgactgattaagtaataattcaaatcgatagtggtttaatagcatcaaatttatgtccaaaaagtggaactagagtctagaaaaaact 38263804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 42740143 - 42740045
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatac 114  Q
    ||||||||||| ||||||| ||||| |||||||||||| |||| ||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  42740143 tcaaattgactaattaagttattatacaaattgatggttgtttgatagcatcaaacttatgtccagaaagtagaactagagtctagaaaaaactcatac 42740045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 26486407 - 26486499
Alignment:
Q  27 gattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 119  Q
    |||||||||||||| |||||||||| |||||| ||| |||||||||||| || ||||||| |||||||||| |||||||||||||||||||||    
T  26486407 gattaagtgattatacaaattgatgatggtttgatagcatcaaatttatttccagaaagtagaactagagtttagaaaaaactcatacgtgta 26486499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 44836752 - 44836840
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaa 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||  ||||||| |||||||| ||||||||    
T  44836752 tcaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgttcagaaagtagaactagaatctagaaa 44836840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 12971439 - 12971336
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||| |||| ||||||||| ||| ||  |||||| ||||||||||||||||| |||    
T  12971439 tcaaattgactgattaagtgattatacaaattgggggtggtttgataatatcagatttatgtccagataggagaactaaagtctagaaaaaactcaaacg 12971340  T
Q  116 tgta 119  Q
    ||||    
T  12971339 tgta 12971336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 27703561 - 27703663
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatg-tcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||| ||||||||||||| |||| ||||  |||||||||||||||||||||||| |||    
T  27703561 caaattgactgattaagtgattatacaaattgggggtggtttgatagcatcaaatttatgttcaaaaaag-agaactagagtctagaaaaaactcaaacg 27703659  T
Q  116 tgta 119  Q
    ||||    
T  27703660 tgta 27703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 15441321 - 15441219
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||| ||||||||||||||| |||||||  |||||||| ||| ||| | ||||||||| ||||||  |||||||||||||||||||||||| |||||    
T  15441321 aaattgagtgattaagtgattatacaaattgtaggtggtttgatagcattatatttatgtctagaaaggagaactagagtctagaaaaaactcaaacgtg 15441222  T
Q  118 tat 120  Q
    |||    
T  15441221 tat 15441219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 237
Target Start/End: Original strand, 13121749 - 13121925
Alignment:
Q  57 ttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtattgnnnnnnnnnnnnngtaacatataattttttaatt 156  Q
    |||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||  ||             |||||||||| ||||||||||    
T  13121749 ttaatagcatcaaatttatatccagaaagtggaactagagtatagaaaaaactcatacgtgtgctg--aagaaaaaaaagtaacatatacttttttaatt 13121846  T
Q  157 taagtgggggtgtgggattataannnnnnnngaggcccatagtttttagagacttgattcggtaacgcttcttgcactccc 237  Q
    ||||||||||||| | |||||||        ||| ||||||| ||||||||||| | ||||||| ||||||||||||||||    
T  13121847 taagtgggggtgt-gtattataatttttgttgagccccatag-ttttagagactcggttcggtagcgcttcttgcactccc 13121925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 50371167 - 50371080
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa 103  Q
    ||||||||||||||||||||||||| |||||||| |||| ||| ||| |||||| ||||| || ||||||  ||||||||||||||||    
T  50371167 tcaaattgactgattaagtgattatacaaattgagggtgatttgatagcatcaactttatatccagaaaggagaactagagtctagaa 50371080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 111
Target Start/End: Original strand, 31369432 - 31369515
Alignment:
Q  28 attaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    ||||||||||||| ||||||||  ||||||| ||||||||| ||||||||| ||||||  ||| |||||| |||||||||||||    
T  31369432 attaagtgattatacaaattgaaagtggtttgataacatcagatttatgtccagaaaggagaattagagtttagaaaaaactca 31369515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 10109752 - 10109662
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||||||| ||||||  ||||||||| |||  ||| |||||||||  | ||||  ||||||||||||||||||||    
T  10109752 caaattgactgattaagtgattatacaaattagtggtggtttgataggatccaatttatgtacaaaaaggagaactagagtctagaaaaaa 10109662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 13120897 - 13120940
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggttta 59  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  13120897 tcaaattgactgattaagtgattattcaaattaatggtggttta 13120940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 1269566 - 1269489
Alignment:
Q  42 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 119  Q
    |||||||  |||||||| ||| ||||| ||||||||| ||||||  ||| |||||||||||||||||||| |||||||    
T  1269566 caaattgggggtggtttcatagcatcagatttatgtctagaaaggagaattagagtctagaaaaaactcaaacgtgta 1269489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 5560514 - 5560413
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||||||||||| |||||||  ||||||||  || || || ||||||||| |||||   |||||| |||||| ||||| |||| |||||    
T  5560514 aaattgactgattaagtgattatacaaattgggggtggtttggtagcaccagatttatgtccagaaatgagaactatagtctaaaaaaatctcaaacgtg 5560415  T
Q  118 ta 119  Q
    ||    
T  5560414 ta 5560413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 12884170 - 12884272
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatacgt 116  Q
    ||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||   ||||||||||||| |||||||||| ||||    
T  12884170 aaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggaaaactagagtctagaaaaaaactcaaacgt 12884269  T
Q  117 gta 119  Q
    |||    
T  12884270 gta 12884272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 22386985 - 22387085
Alignment:
Q  136 gtaacatataattttttaatttaagtgggggtgtgggattataannnnnnnngaggcccatagtttttagagacttgattcggtaacgcttcttgcactc 235  Q
    |||||||||||||||||||||||||||| |||| || |||||||         ||||||||| ||||||||| || | ||||||| ||||| ||| ||||    
T  22386985 gtaacatataattttttaatttaagtggtggtg-ggtattataattgttttttaggcccataatttttagaggctcggttcggtagcgcttattgaactc 22387083  T
Q  236 cc 237  Q
    ||    
T  22387084 cc 22387085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 50552528 - 50552424
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtcta-gaaaaaactcatac 114  Q
    |||||||||| |||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||||  |||||||||| ||    
T  50552528 tcaaattgaccgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctacaaaaaaactcaaac 50552429  T
Q  115 gtgta 119  Q
    |||||    
T  50552428 gtgta 50552424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 7341228 - 7341139
Alignment:
Q  30 taagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 119  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  7341228 taagtgattattcaaattgacggtggtttaataacatcaaatttatgtccagaaagtggaactagagtctagaaaaaactcatatgtgta 7341139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 30915397 - 30915488
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  30915397 tcaaattgactgattaagtaattatacaaattgatgggggtttgatagcatcaaatttatgtccagaaagtagaactagagtctagaaaaaa 30915488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 3748599 - 3748690
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    ||||||||| ||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||| | ||||| |||||||| |||| ||||||    
T  3748599 tcaaattgattgattaagtgattatacaaattgatggcggtttgatagcatcaaatttatgtccaaaaagtagaactagaatctaaaaaaaa 3748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 119
Target Start/End: Complemental strand, 6294288 - 6294209
Alignment:
Q  40 ttcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 119  Q
    |||||||||||| |||||| ||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||| ||||    
T  6294288 ttcaaattgatgatggtttgatagcatcaaatttatgcccaaaaagtagaactagagtctagaaaaaactcatacatgta 6294209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 6360793 - 6360690
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaagtggaactagagtctagaaaaaactcatac 114  Q
    ||||||||||||||||||||||||| |||||| | |||||||| |||  |||  |||||||| ||| ||||  |||||||||||||||||||||||| ||    
T  6360793 tcaaattgactgattaagtgattatacaaattaagggtggtttgataggatccgatttatgtgcaaaaaag-agaactagagtctagaaaaaactcaaac 6360695  T
Q  115 gtgta 119  Q
    |||||    
T  6360694 gtgta 6360690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 19231645 - 19231544
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| |||||||||||| || |||||||| ||| |||| ||| || || ||||||||| ||||||| |||||| | ||||||||||||||| |||    
T  19231645 tcaaattgattgattaagtgat-atacaaattgaaggtagtttgatagcaccagatttatgtccagaaagtagaactaaactctagaaaaaactcaaacg 19231547  T
Q  116 tgt 118  Q
    |||    
T  19231546 tgt 19231544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 12614747 - 12614850
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  ||||||||||||| |||||||||| |||    
T  12614747 tcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctaaaaaaaactcaaacg 12614846  T
Q  116 tgta 119  Q
    ||||    
T  12614847 tgta 12614850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 350445 - 350385
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtc 78  Q
    ||||||||||||| |||||||||  |||||||||||||||| ||| ||||| |||||||||    
T  350445 aaattgactgattgagtgattatataaattgatggtggtttgatagcatcatatttatgtc 350385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 2618388 - 2618285
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaagtggaactagagtctagaaaaaactcatac 114  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| ||||  |||||| ||||||||||||||||| ||    
T  2618388 tcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaag-agaactaaagtctagaaaaaactcaaac 2618290  T
Q  115 gtgta 119  Q
    |||||    
T  2618289 gtgta 2618285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 29308498 - 29308601
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| ||   ||||| ||| ||||||||||||| |||    
T  29308498 tcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagatagaaaaactaaagtttagaaaaaactcaaacg 29308597  T
Q  116 tgta 119  Q
    ||||    
T  29308598 tgta 29308601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 628126 - 628215
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaa 105  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||| |||  |||| |||  | ||||  ||||||||||||||||||    
T  628126 tcaaattgactgattaagtgattatacaaattaggggtggtttgataagatctgatttgtgtacaaaaaggtgaactagagtctagaaaa 628215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 1093073 - 1093166
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    ||||||||||||| ||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| ||  |||||| |||||||||||||||||    
T  1093073 aaattgactgatttagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagataggagaactaaagtctagaaaaaactca 1093166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 1690664 - 1690767
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| |||| |||||||||| ||||||| ||||||||| |||  | || ||||||||| | | ||  |||||| | | ||||||||||||| |||    
T  1690664 tcaaattgattgatcaagtgattatacaaattggtggtggtttgatagtaccagatttatgtccaaataggagaactaaaatttagaaaaaactcaaacg 1690763  T
Q  116 tgta 119  Q
    ||||    
T  1690764 tgta 1690767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 31861034 - 31860933
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||| ||||| |||||||  |||||||| || | | || ||||||||| ||| ||  |||||| |||||||||||| |||| |||    
T  31861034 tcaaattgactgattaagtaattatacaaattg-gggtggtttgat-ataccagatttatgtccagatagaagaactaaagtctagaaaaacctcaaacg 31860937  T
Q  116 tgta 119  Q
    ||||    
T  31860936 tgta 31860933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 57719 - 57617
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtct-agaaaaaactcatacgt 116  Q
    ||||||||||||||||||||||| ||||||   |||||||| |||  |||| ||||||||  | ||||  |||||||||| | | |||||||||| ||||    
T  57719 aaattgactgattaagtgattatacaaattatgggtggtttgataggatcagatttatgtacaaaaaggagaactagagtttaaaaaaaaactcaaacgt 57620  T
Q  117 gta 119  Q
    |||    
T  57619 gta 57617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 7341126 - 7341094
Alignment:
Q  136 gtaacatataattttttaatttaagtgggggtg 168  Q
    |||||||||||||||||||||||||||| ||||    
T  7341126 gtaacatataattttttaatttaagtggtggtg 7341094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 22423717 - 22423614
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| |||||||||||| || ||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  22423717 tcaaattgattgattaagtgatcatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactagagtctagaaaaaactcatacg 22423618  T
Q  116 tgta 119  Q
    ||||    
T  22423617 tgta 22423614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 35654011 - 35654114
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||    
T  35654011 tcaaattgattgattaagtgattatacaaattgatggtggtttgatagcatcatatttatgtccagaaagtagaactagagtctagaaaaaactcatacg 35654110  T
Q  116 tgta 119  Q
    ||||    
T  35654111 tgta 35654114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 43154821 - 43154921
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| | ||||| |||||||| |||||||||||||||||||||    
T  43154821 aaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccaaaaagtagaactagaatctagaaaaaactcatacgtg 43154920  T
Q  118 t 118  Q
    |    
T  43154921 t 43154921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 24449159 - 24449054
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatg--gtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcata 113  Q
    |||||||||| |||||||||||||| |||||||||   ||||||| ||| |||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  24449159 tcaaattgaccgattaagtgattatacaaattgatatagtggtttgatagcatcaaatttatatccagaaagtagaactagagtctagaaaaaactcata 24449060  T
Q  114 cgtgta 119  Q
    ||||||    
T  24449059 cgtgta 24449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 21791578 - 21791673
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    ||||||||||||||||||||||||| || ||||| |||||||| ||  ||||||||||||||  ||||||  ||||||||||||||||||||||||    
T  21791578 tcaaattgactgattaagtgattatacacattgaaggtggtttgatggcatcaaatttatgttcagaaaggagaactagagtctagaaaaaactca 21791673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 5545361 - 5545261
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    ||||||||| |||||||||||||| ||||||| ||||||||| ||  ||||||||||||||| ||| ||  ||| |||||||||||||||||||| ||||    
T  5545361 caaattgaccgattaagtgattatacaaattggtggtggtttgatggcatcaaatttatgtccagacagaagaattagagtctagaaaaaactcaaacgt 5545262  T
Q  117 g 117  Q
    |    
T  5545261 g 5545261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 10575556 - 10575647
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcat 112  Q
    ||||||||||||||||||||||| ||| |||| |||||||| ||| ||| |||||||||| || |||   |||||||||| ||||||||||||||    
T  10575556 aaattgactgattaagtgattatacaagttgagggtggtttgatagcataaaatttatgttaaaaaa---gaactagagtttagaaaaaactcat 10575647  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 45172676 - 45172778
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||| | |||||||| |||  | || ||||||||| |||  |  |||||| ||||||||||||||||| |||    
T  45172676 tcaaattgactgattaagtgattatacaaatt-agggtggtttgatagtaccagatttatgtccagattggagaactaaagtctagaaaaaactcaaacg 45172774  T
Q  116 tgta 119  Q
    ||||    
T  45172775 tgta 45172778  T

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Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 27632431 - 27632327
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa-aaaactcatac 114  Q
    ||||||||||| ||||||||||||| ||||||   |||||||| |||  |||||||||||||  | ||||  |||||||| ||||||| |||||||| ||    
T  27632431 tcaaattgactaattaagtgattatacaaattaggggtggtttgataggatcaaatttatgtacaaaaaggagaactagaatctagaaaaaaactcaaac 27632332  T
Q  115 gtgta 119  Q
    |||||    
T  27632331 gtgta 27632327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 32130821 - 32130916
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  ||||||| ||||||||||||||||    
T  32130821 tcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaagaagaactagtgtctagaaaaaactca 32130916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 55134241 - 55134138
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| |   |||||| |||||| |||||||||| |||    
T  55134241 tcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagataagagaactaaagtctacaaaaaactcaaacg 55134142  T
Q  116 tgta 119  Q
    ||||    
T  55134141 tgta 55134138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 23426198 - 23426288
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  ||||||||||||||||||||    
T  23426198 caaattgactgattaagtgattatacaaattagaggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctagaaaaaa 23426288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 53011744 - 53011642
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  ||| |||||| ||||||||||||| ||||    
T  53011744 caaattgactgattaagtgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaaggagaattagagtttagaaaaaactcaaacgt 53011645  T
Q  117 gta 119  Q
    |||    
T  53011644 gta 53011642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 28463619 - 28463710
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||| |||| ||||||||||||||| ||||||   |||||||| |||| |||  ||||||||  | ||||  ||||||||||||||||||||    
T  28463619 tcaacttgattgattaagtgattatacaaattaggggtggtttgataagatccgatttatgtacaaaaaggagaactagagtctagaaaaaa 28463710  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 22423599 - 22423567
Alignment:
Q  136 gtaacatataattttttaatttaagtgggggtg 168  Q
    |||||||||||||||||||| ||||||||||||    
T  22423599 gtaacatataattttttaatataagtgggggtg 22423567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 42009295 - 42009395
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 117  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| |||||| ||||||||||||||||    
T  42009295 aaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactaaagtctaaaaaaaactcatacgtg 42009394  T
Q  118 t 118  Q
    |    
T  42009395 t 42009395  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 51146968 - 51146867
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa-aaaactcatacgt 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||| |||||||||||||    
T  51146968 aaattgactgattaagtgat-attcaaattgatggtggtttaatagcatcaaatttatgtccaaaaagtggaactagaatctagaaaaaaactcatacgt 51146870  T
Q  117 gta 119  Q
    |||    
T  51146869 gta 51146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 36538217 - 36538320
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||||| | |||||  ||||||||| |||||||||||||||||    
T  36538217 tcaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaagtttatgtccataaagtataactagagtttagaaaaaactcatacg 36538316  T
Q  116 tgta 119  Q
    ||||    
T  36538317 tgta 36538320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 7767096 - 7766991
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa--aaaactcata 113  Q
    ||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||| ||||||| ||||| ||||||||||  ||||||||||    
T  7767096 tcaaattgactgattaagtgattatacaaattgatggttgtttgatagcatcaaatttatgtccagaaagtagaactggagtctagaaaaaaaactcata 7766997  T
Q  114 cgtgta 119  Q
    ||||||    
T  7766996 cgtgta 7766991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 27303220 - 27303118
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||| ||||||||||||||| ||||||||||||||||| ||  ||||||||||||||| | ||||| ||| ||||||||||||||||| ||||||    
T  27303220 tcaaattgattgattaagtgattatacaaattgatggtggtttcatggcatcaaatttatgtccataaagtagaagtagagtctagaaaaaacacatacg 27303121  T
Q  116 tgt 118  Q
    |||    
T  27303120 tgt 27303118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 50677345 - 50677447
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||| |||||||  ||||| ||||||| |||||| |||| |    
T  50677345 tcaaattgactgattaagtgattatacaaattgatggtggtttgataacaacaaatttttgtccagaaagtataactaaagtctaggaaaaacccatatg 50677444  T
Q  116 tgt 118  Q
    |||    
T  50677445 tgt 50677447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 54430585 - 54430482
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| ||||||   |||||||| ||||||||| ||||||||  | ||||  ||||||||| |||||||||||||| |||    
T  54430585 tcaaattgactgattaagtgattatacaaattaggggtggtttgataacatcagatttatgtacaaaaaggagaactagagcctagaaaaaactcaaacg 54430486  T
Q  116 tgta 119  Q
    ||||    
T  54430485 tgta 54430482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 46904773 - 46904662
Alignment:
Q  18 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaattt----------atgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |          ||||| ||||||| ||||||||||||||||||||    
T  46904773 aaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatctatgtccagaaatgtctagaaagtagaactagagtctagaaaaaa 46904674  T
Q  108 ctcatacgtgta 119  Q
    ||||||| ||||    
T  46904673 ctcatacatgta 46904662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 21596367 - 21596265
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    ||||| |||||||||||||||||| |||||||   ||||||| ||| ||||  ||||||||| ||||||  ||| ||||||||||||||||| || ||||    
T  21596367 caaatcgactgattaagtgattatacaaattgggagtggtttgatagcatctgatttatgtccagaaaggagaattagagtctagaaaaaacgcaaacgt 21596268  T
Q  117 gta 119  Q
    |||    
T  21596267 gta 21596265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 23164604 - 23164706
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    |||||||| ||||||||||||||| ||||||   |||||||| |||  |||| ||||||||  | ||||  |||||||||||||||||||||||| ||||    
T  23164604 caaattgattgattaagtgattatacaaattaggggtggtttgataggatcagatttatgtacaaaaaggagaactagagtctagaaaaaactcaaacgt 23164703  T
Q  117 gta 119  Q
    |||    
T  23164704 gta 23164706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 48627060 - 48627163
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    |||||||||||||| |||||||||| |||||||  |||||| | |||  |||| ||||||||| ||| |   |||||| ||||||||||||||||| |||    
T  48627060 tcaaattgactgatcaagtgattatacaaattggcggtggtctgatagtatcagatttatgtccagatatgagaactaaagtctagaaaaaactcaaacg 48627159  T
Q  116 tgta 119  Q
    ||||    
T  48627160 tgta 48627163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21784816 - 21784918
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    |||||| ||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||||||||||||||| ||||    
T  21784816 caaattaactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctagaaaaaactcaaacgt 21784915  T
Q  117 gta 119  Q
    |||    
T  21784916 gta 21784918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 51939587 - 51939688
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaagtggaactagagtctagaaaaaactcatac 114  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| ||||  |||||||||||||||||||||||| ||    
T  51939587 tcaaattgactgattaagtgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaaag-agaactagagtctagaaaaaactcaaac 51939685  T
Q  115 gtg 117  Q
    |||    
T  51939686 gtg 51939688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 41707086 - 41707190
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatac 114  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||||| |||||||||| ||    
T  41707086 tcaaattgactgattaagtgattatgcaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctagaaaaaaactcaaac 41707185  T
Q  115 gtgta 119  Q
    |||||    
T  41707186 gtgta 41707190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 43905874 - 43905978
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||| ||||||||| |||||||| ||| |||| |||  | || ||||||||| ||| ||  |||||| |||||| ||||| |||| |||    
T  43905874 tcaaattgactgattgagtgattatacaaattgagggtagtttgatagtaccagatttatgtccagataggagaactaaagtctaaaaaaacctcaaacg 43905973  T
Q  116 tgtat 120  Q
    |||||    
T  43905974 tgtat 43905978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 46791729 - 46791832
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatacg 115  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||||| |||||||||| |||    
T  46791729 caaattgactgattaagtgattatacaaattagaggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctagaaaaaaactcaaacg 46791828  T
Q  116 tgta 119  Q
    ||||    
T  46791829 tgta 46791832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 28132767 - 28132857
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||||||| |||||| | |||| ||| |||  |||  ||||||||  | ||||  ||||||||||||||||||||    
T  28132767 caaattgactgattaagtgattatacaaattaagggtgatttgataggatctgatttatgtacaaaaaggagaactagagtctagaaaaaa 28132857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 52655155 - 52655257
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctaga-aaaaactcatacg 115  Q
    |||||||||||||||||||||||| ||||||  ||||||||| |||  |||  |||||| |  | ||||  ||||||||||||||| ||||||||| |||    
T  52655155 caaattgactgattaagtgattatacaaattagtggtggtttgataggatccgatttatatacaaaaaggagaactagagtctagagaaaaactcaaacg 52655254  T
Q  116 tgt 118  Q
    |||    
T  52655255 tgt 52655257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 8364204 - 8364101
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatacg 115  Q
    |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||| ||||||||| |||||||||| |||    
T  8364204 caaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaacaagagtctagaaaaaaactcaaacg 8364105  T
Q  116 tgta 119  Q
    ||||    
T  8364104 tgta 8364101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 13401492 - 13401401
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    ||||||||||||||||||||||||| |||||| |  ||||||| |||  ||| ||| |||||  | ||||  |||||||||| |||||||||    
T  13401492 tcaaattgactgattaagtgattatacaaattaagagtggtttgataggatcgaatgtatgtacaaaaaggagaactagagtttagaaaaaa 13401401  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 25599117 - 25599208
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||||||||  |||||   |||||||| |||  |||| ||||||||  | ||||  ||||||||||||| ||||||    
T  25599117 tcaaattgactgattaagtgattatataaattagaggtggtttgatagaatcagatttatgtacaaaaaggagaactagagtctaaaaaaaa 25599208  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 40152161 - 40152264
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    |||||||||| |||||||||||||| |||||||  | || |||  || ||||| || |||||| | ||||  ||| ||||||||| |||||||||| |||    
T  40152161 tcaaattgaccgattaagtgattatacaaattggggatgatttggtagcatcagatctatgtctaaaaagaagaattagagtctaaaaaaaactcaaacg 40152260  T
Q  116 tgta 119  Q
    ||||    
T  40152261 tgta 40152264  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 24252652 - 24252563
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    |||||||||||||||||||||||| |||||| | |||||||| |||  |||  | ||||||  | ||||  ||||||||||||||||||||    
T  24252652 caaattgactgattaagtgattatacaaattaagggtggtttgataggatctga-ttatgtacaaaaagaagaactagagtctagaaaaaa 24252563  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 1649862 - 1649955
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaact 109  Q
    ||||||||| ||||||||||||||| |||||||  |||| ||| ||| || || ||||||||| |||||   |||||||| | |||| ||||||    
T  1649862 tcaaattgaatgattaagtgattatacaaattgggggtgatttgatagcaccagatttatgtctagaaaagagaactagattttagacaaaact 1649955  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 29387785 - 29387889
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtct-agaaaaaactcatac 114  Q
    ||||||||| ||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||| | |||||||||| ||    
T  29387785 tcaaattgattgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctaaaaaaaaactcaaac 29387884  T
Q  115 gtgta 119  Q
    |||||    
T  29387885 gtgta 29387889  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 168
Target Start/End: Complemental strand, 46904644 - 46904612
Alignment:
Q  136 gtaacatataattttttaatttaagtgggggtg 168  Q
    ||||||| |||||||||||||||||||||||||    
T  46904644 gtaacatgtaattttttaatttaagtgggggtg 46904612  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 3628778 - 3628881
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    |||||||||||||||| |||||||| |||||| |||||||||| ||| ||||||||||||| | |||| || ||||||||||||||||||||||||||||    
T  3628778 tcaaattgactgattatgtgattatacaaattaatggtggtttgatagcatcaaatttatgaccagaatgtagaactagagtctagaaaaaactcatacg 3628877  T
Q  116 tgta 119  Q
    ||||    
T  3628878 tgta 3628881  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 35874959 - 35874854
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatg--gtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcata 113  Q
    |||||||||| |||||||||||||| |||||||||   ||||||| ||| |||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  35874959 tcaaattgaccgattaagtgattatacaaattgatatagtggtttgatagcatcaaatttatatccagaaagtagaactagagtctagaaaaaactcata 35874860  T
Q  114 cgtgta 119  Q
    ||||||    
T  35874859 cgtgta 35874854  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 32098210 - 32098312
Alignment:
Q  17 caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 116  Q
    ||||||||||||||||||||| || |||||| |  ||||||| ||| ||||||||||||||| | ||||   ||||||||||||||||||||||| ||||    
T  32098210 caaattgactgattaagtgatcatacaaattaagagtggtttgatagcatcaaatttatgtccaaaaaggataactagagtctagaaaaaactcaaacgt 32098309  T
Q  117 gta 119  Q
    |||    
T  32098310 gta 32098312  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 34523982 - 34524085
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||| ||| ||  |||||| ||||||||||||||||| |||    
T  34523982 tcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtccagataggagaactaaagtctagaaaaaactcaaacg 34524081  T
Q  116 tgta 119  Q
    ||||    
T  34524082 tgta 34524085  T

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Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 39697969 - 39698072
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||| ||||| |||| || ||||||| ||||||||| |||  | |||||||||| ||||| ||  |||||| ||||||||||||||||| |||    
T  39697969 tcaaattgactaattaaatgatcatacaaattggtggtggtttgatagtaccaaatttatgccaagataggagaactaaagtctagaaaaaactcaaacg 39698068  T
Q  116 tgta 119  Q
    ||||    
T  39698069 tgta 39698072  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 23567305 - 23567408
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 115  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| |   |||||| |||||||||||| |||| |||    
T  23567305 tcaaattgactgattaagtgattatacaaattgggggtggtttgatagtagcagatttatgttcagataagagaactaaagtctagaaaaacctcaaacg 23567404  T
Q  116 tgta 119  Q
    ||||    
T  23567405 tgta 23567408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 36515191 - 36515229
Alignment:
Q  28 attaagtgattattcaaattgatggtggtttaataacat 66  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  36515191 attaactgattattcaaattgatggtggtttaataacat 36515229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 18420640 - 18420744
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatac 114  Q
    ||||||||||||||||||||||||| |||||| |  ||||||| |||  |||  ||||||||  | ||||  |||||||||||| | |||||||||| ||    
T  18420640 tcaaattgactgattaagtgattatacaaattaagtgtggtttgataggatctgatttatgtacaaaaaggagaactagagtctggaaaaaaactcaaac 18420739  T
Q  115 gtgta 119  Q
    |||||    
T  18420740 gtgta 18420744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 5869353 - 5869446
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 111  Q
    ||||||||||||||||||||||| |  |||||| ||||||||| |||  ||| |||||||||  ||||||  |||||| |||||| ||||||||||    
T  5869353 tcaaattgactgattaagtgattttaaaaattg-tggtggtttgatagtatc-aatttatgtacagaaaggagaactaaagtctaaaaaaaactca 5869446  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 30915319 - 30915410
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    ||||||||||||||||||||||||| || ||||  || |||||  || ||||| || |||||| ||||||  ||| ||||||||| ||||||    
T  30915319 tcaaattgactgattaagtgattatacatattggaggaggtttggtagcatcagatctatgtccagaaaggagaattagagtctaaaaaaaa 30915410  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 43926354 - 43926445
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 107  Q
    ||||||||||||||||||| ||||| ||||||   |||||||| |||  |||  |||||| |  | ||||| ||||||||||||||||||||    
T  43926354 tcaaattgactgattaagtaattatacaaattatgggtggtttgataggatccgatttatatacaaaaagtagaactagagtctagaaaaaa 43926445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 3471633 - 3471572
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt 77  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||| ||||||||    
T  3471633 tcaaattgactgattaagtgattatacaaattaggggtggtttgatagaatcacatttatgt 3471572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 16743 - 16639
Alignment:
Q  16 tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatac 114  Q
    ||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||||||||| |||||||||| ||    
T  16743 tcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctagaaaaaaactcaaac 16644  T
Q  115 gtgta 119  Q
    |||||    
T  16643 gtgta 16639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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