View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_31 (Length: 247)
Name: NF18013_high_31
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_31 |
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| [»] scaffold1918 (7 HSPs) |
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Alignment Details
Target: scaffold1918 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: scaffold1918
Description:
Target: scaffold1918; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 69 - 230
Target Start/End: Complemental strand, 360 - 199
Alignment:
| Q |
69 |
ttacatttacaagtcgccaccgcctccctcaccgtcacctccaccatcttacatttacaaatctccaccacctccaccctatgagcacaagtctccatct |
168 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
360 |
ttacatttacaagtcaccaccgcctccctcaccgtcacctccaccatcttacatttacaaatctccaccacctccaccctatgagcacaagtctccatct |
261 |
T |
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| Q |
169 |
tatgaatataagtctcccccacctccttcaccatcacccccaccaccctatgagtataaatc |
230 |
Q |
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| T |
260 |
tatgaatataagtctcccccacctccttcaccatcacccccaccaccctatgagtataaatc |
199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 518 - 450
Alignment:
| Q |
76 |
tacaagtcgccaccgcctccctcaccgtcacctccaccatcttacatttacaaatctccaccacctcca |
144 |
Q |
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| T |
518 |
tacaagtcacccccacctccatcaccatcacctccaccaccttacatttacaagtcaccaccacctcca |
450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 434 - 361
Alignment:
| Q |
142 |
ccaccctatgagcacaagtctccatcttatgaatataagtctcccccacctccttcaccatcacccccaccacc |
215 |
Q |
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| T |
434 |
ccaccatatgagcacaaggctccatcttaccagtacaagtcacccccaccaccatcaccatcaccaccaccacc |
361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 428 - 395
Alignment:
| Q |
1 |
tatgagcacaaggctccatcttaccagtacaagt |
34 |
Q |
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| T |
428 |
tatgagcacaaggctccatcttaccagtacaagt |
395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 477 - 432
Alignment:
| Q |
69 |
ttacatttacaagtcgccaccgcctccctcaccgtcacctccacca |
114 |
Q |
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| T |
477 |
ttacatttacaagtcaccaccacctccatcaccgtcacctccacca |
432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 559 - 478
Alignment:
| Q |
134 |
caccacctccaccctatgagcacaagtctccatcttatgaatataagtctcccccacctccttcaccatcacccccaccacc |
215 |
Q |
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| T |
559 |
caccaccgcctccatatgagcacaaggcaccatcttaccagtacaagtcacccccacctccatcaccatcacctccaccacc |
478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1918; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 545 - 512
Alignment:
| Q |
1 |
tatgagcacaaggctccatcttaccagtacaagt |
34 |
Q |
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| T |
545 |
tatgagcacaaggcaccatcttaccagtacaagt |
512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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