View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_32 (Length: 236)
Name: NF18013_high_32
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 16301768 - 16301896
Alignment:
| Q |
1 |
tagtttgtggtattttaattaagactcttatatgagttgatttattatgttaagtatgatgtttctttacaatttaattaatgaaagctttatggtttta |
100 |
Q |
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| T |
16301768 |
tagtttgtggtattttaattaagactcttatatgagttgatttattatgttaagtatgatgtttctttacaatttaattaatgaaagctttatggtttta |
16301867 |
T |
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| Q |
101 |
ttagtttggatttaaagttcatttatagt |
129 |
Q |
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| T |
16301868 |
ttagtttggatttaaagttcatttatagt |
16301896 |
T |
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Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 128 - 221
Target Start/End: Original strand, 16301954 - 16302047
Alignment:
| Q |
128 |
gtcatgtcagtttgttttttcttgacaaagtagtatgaagtagttcaaaagtggccaataagcttactcctacaaaaattgcacaactcaattg |
221 |
Q |
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| T |
16301954 |
gtcatgtcaatttgttttttcttgacaaagtagtatgaagtagttcaaaagtggccaataagcttactcctacaaaaattgcacaactcaattg |
16302047 |
T |
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