View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_33 (Length: 235)
Name: NF18013_high_33
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_33 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 20170441 - 20170238
Alignment:
| Q |
13 |
gtatcatagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcactagaaagtgggaaccaacatattactgacaagttacgac |
112 |
Q |
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| T |
20170441 |
gtatcctagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcgctagaaagtgggaaccaacatattactgacaagttacgac |
20170342 |
T |
|
| Q |
113 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttatatggtatacgataagtgtat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20170341 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttgtatggtatacgataagtgtat |
20170242 |
T |
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| Q |
213 |
atac |
216 |
Q |
| |
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|||| |
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| T |
20170241 |
atac |
20170238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 44392151 - 44391948
Alignment:
| Q |
13 |
gtatcatagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcactagaaagtgggaaccaacatattactgacaagttacgac |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44392151 |
gtatcctagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcgctagaaagtgggaaccaacatattactgacaagttacgac |
44392052 |
T |
|
| Q |
113 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttatatggtatacgataagtgtat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44392051 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttgtatggtatacgataagtgtat |
44391952 |
T |
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| Q |
213 |
atac |
216 |
Q |
| |
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|||| |
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|
| T |
44391951 |
atac |
44391948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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