View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_high_34 (Length: 234)

Name: NF18013_high_34
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_high_34
NF18013_high_34
[»] chr6 (6 HSPs)
chr6 (17-97)||(7341139-7341219)
chr6 (18-97)||(6294209-6294288)
chr6 (20-85)||(30915423-30915488)
chr6 (20-85)||(3748625-3748690)
chr6 (20-96)||(19231544-19231620)
chr6 (114-146)||(7341094-7341126)
[»] chr7 (10 HSPs)
chr7 (17-96)||(7366618-7366697)
chr7 (20-97)||(26633293-26633370)
chr7 (20-99)||(9479055-9479134)
chr7 (20-93)||(40738048-40738121)
chr7 (20-97)||(36438408-36438485)
chr7 (20-98)||(18895454-18895532)
chr7 (114-215)||(7366504-7366604)
chr7 (29-97)||(32956704-32956773)
chr7 (114-146)||(40738143-40738175)
chr7 (29-89)||(40841312-40841372)
[»] chr4 (7 HSPs)
chr4 (20-97)||(22423614-22423691)
chr4 (20-97)||(35654037-35654114)
chr4 (20-96)||(43154845-43154921)
chr4 (30-97)||(24449054-24449121)
chr4 (20-95)||(5545261-5545336)
chr4 (23-89)||(21791607-21791673)
chr4 (114-146)||(22423567-22423599)
[»] chr1 (15 HSPs)
chr1 (17-97)||(24556736-24556816)
chr1 (17-97)||(17674408-17674487)
chr1 (18-90)||(22386892-22386964)
chr1 (20-97)||(37873819-37873897)
chr1 (17-87)||(38263804-38263874)
chr1 (20-97)||(26486422-26486499)
chr1 (35-215)||(13121749-13121925)
chr1 (20-92)||(42740045-42740117)
chr1 (20-98)||(15441219-15441297)
chr1 (20-82)||(44836778-44836840)
chr1 (20-97)||(1269489-1269566)
chr1 (20-97)||(27703586-27703663)
chr1 (20-97)||(12971336-12971413)
chr1 (20-89)||(31369446-31369515)
chr1 (114-215)||(22386985-22387085)
[»] chr2 (7 HSPs)
chr2 (17-100)||(13997241-13997324)
chr2 (20-97)||(39081328-39081405)
chr2 (17-94)||(29480691-29480768)
chr2 (20-97)||(1418840-1418916)
chr2 (19-91)||(32186206-32186278)
chr2 (20-93)||(36059962-36060035)
chr2 (114-146)||(36060058-36060090)
[»] chr5 (8 HSPs)
chr5 (17-94)||(17325777-17325854)
chr5 (20-96)||(138075-138151)
chr5 (21-97)||(16515454-16515530)
chr5 (20-84)||(10033489-10033553)
chr5 (33-89)||(40779130-40779186)
chr5 (20-94)||(27351282-27351356)
chr5 (42-95)||(40956245-40956298)
chr5 (45-97)||(3349810-3349862)
[»] chr3 (10 HSPs)
chr3 (17-97)||(51146867-51146948)
chr3 (20-96)||(42009319-42009395)
chr3 (20-97)||(36538243-36538320)
chr3 (20-97)||(7766991-7767070)
chr3 (20-96)||(27303118-27303194)
chr3 (20-96)||(50677371-50677447)
chr3 (52-97)||(46904662-46904707)
chr3 (29-97)||(54430482-54430550)
chr3 (29-97)||(23164638-23164706)
chr3 (114-146)||(46904612-46904644)
[»] chr8 (4 HSPs)
chr8 (20-97)||(3628804-3628881)
chr8 (30-97)||(35874854-35874921)
chr8 (30-97)||(32098245-32098312)
chr8 (20-97)||(39697995-39698072)


Alignment Details
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 7341219 - 7341139
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  7341219 attcaaattgacggtggtttaataacatcaaatttatgtccagaaagtggaactagagtctagaaaaaactcatatgtgta 7341139  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 6294288 - 6294209
Alignment:
Q  18 ttcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||||||| |||||| ||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||| ||||    
T  6294288 ttcaaattgatgatggtttgatagcatcaaatttatgcccaaaaagtagaactagagtctagaaaaaactcatacatgta 6294209  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 30915423 - 30915488
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 85  Q
    ||||||||||| ||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||    
T  30915423 caaattgatgggggtttgatagcatcaaatttatgtccagaaagtagaactagagtctagaaaaaa 30915488  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 3748625 - 3748690
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaa 85  Q
    ||||||||||| ||||| ||| ||||||||||||||| | ||||| |||||||| |||| ||||||    
T  3748625 caaattgatggcggtttgatagcatcaaatttatgtccaaaaagtagaactagaatctaaaaaaaa 3748690  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 19231620 - 19231544
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 96  Q
    |||||||| ||| |||| ||| || || ||||||||| ||||||| |||||| | ||||||||||||||| ||||||    
T  19231620 caaattgaaggtagtttgatagcaccagatttatgtccagaaagtagaactaaactctagaaaaaactcaaacgtgt 19231544  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 7341126 - 7341094
Alignment:
Q  114 gtaacatataattttttaatttaagtgggggtg 146  Q
    |||||||||||||||||||||||||||| ||||    
T  7341126 gtaacatataattttttaatttaagtggtggtg 7341094  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 7366697 - 7366618
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 96  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  7366697 attcaaattgatggtggtttaatatcatcaaatttatgtccagaaagtggaactagagtatagaaaaaactcatacgtgt 7366618  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 26633370 - 26633293
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  26633370 caaattgatggtggttttatagcatcaaatttatgtccagaaagtagaactagagtctagaaaaaactcatacgtgta 26633293  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 9479134 - 9479055
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtatt 99  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||| ||||||||| |||||||||||||    
T  9479134 caaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactagagtttagaaaaaaatcatacgtgtatt 9479055  T

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Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 40738048 - 40738121
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 93  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||||| |||||||||||||||||    
T  40738048 caaattgatggtggtttgatagcatcaaatttatgtcaaaaaagtagaactagagtttagaaaaaactcatacg 40738121  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 36438408 - 36438485
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||| ||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||||    
T  36438408 caaattgatagtggtttgatagcatcaaatttatgtccagaaagtagaactagagcctagaaaaaactcatacctgta 36438485  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 18895454 - 18895532
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtat 98  Q
    |||||| || ||||||| ||||||||||||||||||| |  |||| ||||| |||||||||||||||||||||||||||    
T  18895454 caaattaatagtggtttgataacatcaaatttatgtctaataagtagaactcgagtctagaaaaaactcatacgtgtat 18895532  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 7366604 - 7366504
Alignment:
Q  114 gtaacatataattttttaatttaagtgggggtgtgggattataannnnnnnngaggcccatagtttttagagacttgattcggtaacgcttcttgcactc 213  Q
    |||||||||||| |||||||||||||||||||| || |||||||         ||||||||| ||||||||| || | ||||||| | ||||||||||||    
T  7366604 gtaacatataatattttaatttaagtgggggtg-ggcattataatttgtttttaggcccataatttttagaggctcggttcggtagcacttcttgcactc 7366506  T
Q  214 cc 215  Q
    ||    
T  7366505 cc 7366504  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 32956773 - 32956704
Alignment:
Q  29 ggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtct-agaaaaaactcatacgtgta 97  Q
    |||||||| ||| ||||| ||||||||| ||||||  |||||||||||| | |||||||||| |||||||    
T  32956773 ggtggtttgatagcatcagatttatgtccagaaaggagaactagagtctaaaaaaaaactcaaacgtgta 32956704  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 40738143 - 40738175
Alignment:
Q  114 gtaacatataattttttaatttaagtgggggtg 146  Q
    ||||||| |||||||||||||||||||||||||    
T  40738143 gtaacatgtaattttttaatttaagtgggggtg 40738175  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 89
Target Start/End: Original strand, 40841312 - 40841372
Alignment:
Q  29 ggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 89  Q
    |||||||| ||||||||| ||||||||| | ||||   || ||||||||||||||||||||    
T  40841312 ggtggtttgataacatcatatttatgtccaaaaagaataattagagtctagaaaaaactca 40841372  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 22423691 - 22423614
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  22423691 caaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactagagtctagaaaaaactcatacgtgta 22423614  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 35654037 - 35654114
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||||||||||| ||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  35654037 caaattgatggtggtttgatagcatcatatttatgtccagaaagtagaactagagtctagaaaaaactcatacgtgta 35654114  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 43154845 - 43154921
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 96  Q
    ||||||||||||||||| ||| ||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||    
T  43154845 caaattgatggtggtttgatagcatcaaatttatgtccaaaaagtagaactagaatctagaaaaaactcatacgtgt 43154921  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 24449121 - 24449054
Alignment:
Q  30 gtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||| ||| |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||    
T  24449121 gtggtttgatagcatcaaatttatatccagaaagtagaactagagtctagaaaaaactcatacgtgta 24449054  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 5545336 - 5545261
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 95  Q
    ||||||| ||||||||| ||  ||||||||||||||| ||| ||  ||| |||||||||||||||||||| |||||    
T  5545336 caaattggtggtggtttgatggcatcaaatttatgtccagacagaagaattagagtctagaaaaaactcaaacgtg 5545261  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 21791607 - 21791673
Alignment:
Q  23 attgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 89  Q
    ||||| |||||||| ||  ||||||||||||||  ||||||  ||||||||||||||||||||||||    
T  21791607 attgaaggtggtttgatggcatcaaatttatgttcagaaaggagaactagagtctagaaaaaactca 21791673  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 22423599 - 22423567
Alignment:
Q  114 gtaacatataattttttaatttaagtgggggtg 146  Q
    |||||||||||||||||||| ||||||||||||    
T  22423599 gtaacatataattttttaatataagtgggggtg 22423567  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 24556816 - 24556736
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||||||||||||||||||| || |||||||||||  ||||||||||| ||||||||||||||||||||||||||||    
T  24556816 attcaaattgatggtggtttaatagcaccaaatttatgttgagaaagtggaattagagtctagaaaaaactcatacgtgta 24556736  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 17674408 - 17674487
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||| |||||||||||||||||    
T  17674408 attcaaattgatggtggtttaatagcatcaaatttatatctagaaagtgaaactagagtctag-aaaaactcatacgtgta 17674487  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22386892 - 22386964
Alignment:
Q  18 ttcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcat 90  Q
    |||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  22386892 ttcaaattgatggtggttaaatagcatcaaatttatgtccagacagtggaactagagtctagaaaaaactcat 22386964  T

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Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 37873819 - 37873897
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctag-aaaaaactcatacgtgta 97  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  37873819 caaattgatggtggtttgatagcatcaaatttatgtctagaaagtagaactagagtctagaaaaaaactcatacgtgta 37873897  T

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Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 38263874 - 38263804
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaact 87  Q
    |||||||| ||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||    
T  38263874 attcaaatcgatagtggtttaatagcatcaaatttatgtccaaaaagtggaactagagtctagaaaaaact 38263804  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 26486422 - 26486499
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||||| |||||| ||| |||||||||||| || ||||||| |||||||||| |||||||||||||||||||||    
T  26486422 caaattgatgatggtttgatagcatcaaatttatttccagaaagtagaactagagtttagaaaaaactcatacgtgta 26486499  T

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Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 35 - 215
Target Start/End: Original strand, 13121749 - 13121925
Alignment:
Q  35 ttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtattgnnnnnnnnnnnnngtaacatataattttttaatt 134  Q
    |||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||  ||             |||||||||| ||||||||||    
T  13121749 ttaatagcatcaaatttatatccagaaagtggaactagagtatagaaaaaactcatacgtgtgctg--aagaaaaaaaagtaacatatacttttttaatt 13121846  T
Q  135 taagtgggggtgtgggattataannnnnnnngaggcccatagtttttagagacttgattcggtaacgcttcttgcactccc 215  Q
    ||||||||||||| | |||||||        ||| ||||||| ||||||||||| | ||||||| ||||||||||||||||    
T  13121847 taagtgggggtgt-gtattataatttttgttgagccccatag-ttttagagactcggttcggtagcgcttcttgcactccc 13121925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 42740117 - 42740045
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatac 92  Q
    |||||||||||| |||| ||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||    
T  42740117 caaattgatggttgtttgatagcatcaaacttatgtccagaaagtagaactagagtctagaaaaaactcatac 42740045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 15441297 - 15441219
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtat 98  Q
    |||||||  |||||||| ||| ||| | ||||||||| ||||||  |||||||||||||||||||||||| ||||||||    
T  15441297 caaattgtaggtggtttgatagcattatatttatgtctagaaaggagaactagagtctagaaaaaactcaaacgtgtat 15441219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 44836778 - 44836840
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaa 82  Q
    ||||||||||||||||| ||| ||||||||||||||  ||||||| |||||||| ||||||||    
T  44836778 caaattgatggtggtttgatagcatcaaatttatgttcagaaagtagaactagaatctagaaa 44836840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 1269566 - 1269489
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||  |||||||| ||| ||||| ||||||||| ||||||  ||| |||||||||||||||||||| |||||||    
T  1269566 caaattgggggtggtttcatagcatcagatttatgtctagaaaggagaattagagtctagaaaaaactcaaacgtgta 1269489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 27703586 - 27703663
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgt-caagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||  |||||||| ||| |||||||||||||| ||| |||| | ||||||||||||||||||||||| |||||||    
T  27703586 caaattgggggtggtttgatagcatcaaatttatgttcaaaaaagag-aactagagtctagaaaaaactcaaacgtgta 27703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 12971413 - 12971336
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||  |||||||| |||| |||| ||||||||| ||| ||  |||||| ||||||||||||||||| |||||||    
T  12971413 caaattgggggtggtttgataatatcagatttatgtccagataggagaactaaagtctagaaaaaactcaaacgtgta 12971336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 31369446 - 31369515
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 89  Q
    ||||||||  ||||||| ||||||||| ||||||||| ||||||  ||| |||||| |||||||||||||    
T  31369446 caaattgaaagtggtttgataacatcagatttatgtccagaaaggagaattagagtttagaaaaaactca 31369515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 22386985 - 22387085
Alignment:
Q  114 gtaacatataattttttaatttaagtgggggtgtgggattataannnnnnnngaggcccatagtttttagagacttgattcggtaacgcttcttgcactc 213  Q
    |||||||||||||||||||||||||||| |||| || |||||||         ||||||||| ||||||||| || | ||||||| ||||| ||| ||||    
T  22386985 gtaacatataattttttaatttaagtggtggtg-ggtattataattgttttttaggcccataatttttagaggctcggttcggtagcgcttattgaactc 22387083  T
Q  214 cc 215  Q
    ||    
T  22387084 cc 22387085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 13997324 - 13997241
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtattg 100  Q
    ||||||||||| ||||||| |||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  13997324 attcaaattgacggtggttcaatagcatcaaatttatgtccagaaagtgaaactagagtctaggaaaaactcatacgtgtattg 13997241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 39081405 - 39081328
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  39081405 caaattgatggtggtttgatagcatcaaatttatgtccagaaagtaaaactagagtctagaaaaaactcatacgtgta 39081328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 29480691 - 29480768
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 94  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| |||||| |||||| |||||| ||||||||    
T  29480691 attcaaattgatggtggtttaatagcatcaaatttatgtccagaaagttgaactaaagtctaaaaaaaaatcatacgt 29480768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 1418916 - 1418840
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||||||||||| ||| ||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||||    
T  1418916 caaattgatggtggtttgatagcatcaaatt-atgtctaaaaagtagaactagagtctagaaaaaactcatacgtgta 1418840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 32186206 - 32186278
Alignment:
Q  19 tcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcata 91  Q
    |||| ||||||||||||| ||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  32186206 tcaatttgatggtggtttgatagcatcaaatttatgtctaaaaagtagaactagagtctagaaaaaactcata 32186278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 36059962 - 36060035
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacg 93  Q
    ||||||||||||||||| ||| |||||||||| |||| | ||||| |||||||||||||||||||||| |||||    
T  36059962 caaattgatggtggtttgatagcatcaaatttttgtctaaaaagtagaactagagtctagaaaaaacttatacg 36060035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 36060058 - 36060090
Alignment:
Q  114 gtaacatataattttttaatttaagtgggggtg 146  Q
    ||||||| |||||||||||||||||||||||||    
T  36060058 gtaacatgtaattttttaatttaagtgggggtg 36060090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 17325854 - 17325777
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 94  Q
    |||||||| |||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  17325854 attcaaatcgatggtagtttaatagcatcaaatttatgtccagaaagtggaactagagtctaaaaaaaactcatacgt 17325777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 138151 - 138075
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 96  Q
    ||||||||||||||||| ||| |||||||||||||||   ||||| |||||||||||||||||||||||||||||||    
T  138151 caaattgatggtggtttgatagcatcaaatttatgtccgaaaagtagaactagagtctagaaaaaactcatacgtgt 138075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 16515530 - 16515454
Alignment:
Q  21 aaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||| |||||| ||| || ||||| ||||||||||||    
T  16515530 aaattgatggtgttttaatagcatcaaatttatgtctagaaagtagaactaaagtttaaaaaaagctcatacgtgta 16515454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 10033553 - 10033489
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaa 84  Q
    ||||||||||| ||||| ||| ||||||||||||||  ||||||| |||||||||||||||||||    
T  10033553 caaattgatgggggtttgatagcatcaaatttatgtacagaaagtagaactagagtctagaaaaa 10033489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 40779186 - 40779130
Alignment:
Q  33 gtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 89  Q
    |||| ||||||||||||||||||  ||||||  |||||||| |||||||||||||||    
T  40779186 gtttgataacatcaaatttatgttcagaaaggagaactagactctagaaaaaactca 40779130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 27351356 - 27351282
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgt 94  Q
    |||||||  |||||||| ||| || |||||||||||  ||||||  ||||||||||||||||||| |||| ||||    
T  27351356 caaattggaggtggtttgatagcaccaaatttatgttcagaaaggagaactagagtctagaaaaatctcaaacgt 27351282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 40956298 - 40956245
Alignment:
Q  42 catcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtg 95  Q
    ||||| ||||||||| | ||||  |||||||||||||||||||||||| |||||    
T  40956298 catcagatttatgtccacaaaggagaactagagtctagaaaaaactcaaacgtg 40956245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 3349810 - 3349862
Alignment:
Q  45 caaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||||||| ||| ||  |||||| ||||||||||||||||| |||||||    
T  3349810 caaatttatgtccagataggagaactaaagtctagaaaaaactcaaacgtgta 3349862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 51146948 - 51146867
Alignment:
Q  17 attcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa-aaaactcatacgtgta 97  Q
    |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  51146948 attcaaattgatggtggtttaatagcatcaaatttatgtccaaaaagtggaactagaatctagaaaaaaactcatacgtgta 51146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 42009319 - 42009395
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 96  Q
    ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||| |||||| |||||||||||||||||    
T  42009319 caaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactaaagtctaaaaaaaactcatacgtgt 42009395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 36538243 - 36538320
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||||||||||||| ||| |||||| |||||||| | |||||  ||||||||| |||||||||||||||||||||    
T  36538243 caaattgatggtggtttgatagcatcaagtttatgtccataaagtataactagagtttagaaaaaactcatacgtgta 36538320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 7767070 - 7766991
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa--aaaactcatacgtgta 97  Q
    |||||||||||| |||| ||| ||||||||||||||| ||||||| ||||| ||||||||||  ||||||||||||||||    
T  7767070 caaattgatggttgtttgatagcatcaaatttatgtccagaaagtagaactggagtctagaaaaaaaactcatacgtgta 7766991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 27303194 - 27303118
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 96  Q
    ||||||||||||||||| ||  ||||||||||||||| | ||||| ||| ||||||||||||||||| |||||||||    
T  27303194 caaattgatggtggtttcatggcatcaaatttatgtccataaagtagaagtagagtctagaaaaaacacatacgtgt 27303118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 50677371 - 50677447
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 96  Q
    ||||||||||||||||| |||||| ||||||| |||| |||||||  ||||| ||||||| |||||| |||| ||||    
T  50677371 caaattgatggtggtttgataacaacaaatttttgtccagaaagtataactaaagtctaggaaaaacccatatgtgt 50677447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 46904707 - 46904662
Alignment:
Q  52 atgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||| ||||||| ||||||||||||||||||||||||||| ||||    
T  46904707 atgtctagaaagtagaactagagtctagaaaaaactcatacatgta 46904662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Complemental strand, 54430550 - 54430482
Alignment:
Q  29 ggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||| ||||||||| ||||||||  | ||||  ||||||||| |||||||||||||| |||||||    
T  54430550 ggtggtttgataacatcagatttatgtacaaaaaggagaactagagcctagaaaaaactcaaacgtgta 54430482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 23164638 - 23164706
Alignment:
Q  29 ggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||||| |||  |||| ||||||||  | ||||  |||||||||||||||||||||||| |||||||    
T  23164638 ggtggtttgataggatcagatttatgtacaaaaaggagaactagagtctagaaaaaactcaaacgtgta 23164706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 146
Target Start/End: Complemental strand, 46904644 - 46904612
Alignment:
Q  114 gtaacatataattttttaatttaagtgggggtg 146  Q
    ||||||| |||||||||||||||||||||||||    
T  46904644 gtaacatgtaattttttaatttaagtgggggtg 46904612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 3628804 - 3628881
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    |||||| |||||||||| ||| ||||||||||||| | |||| || ||||||||||||||||||||||||||||||||    
T  3628804 caaattaatggtggtttgatagcatcaaatttatgaccagaatgtagaactagagtctagaaaaaactcatacgtgta 3628881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 35874921 - 35874854
Alignment:
Q  30 gtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||| ||| |||||||||||| || ||||||| ||||||||||||||||||||||||||||||||    
T  35874921 gtggtttgatagcatcaaatttatatccagaaagtagaactagagtctagaaaaaactcatacgtgta 35874854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 32098245 - 32098312
Alignment:
Q  30 gtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||| ||| ||||||||||||||| | ||||   ||||||||||||||||||||||| |||||||    
T  32098245 gtggtttgatagcatcaaatttatgtccaaaaaggataactagagtctagaaaaaactcaaacgtgta 32098312  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 39697995 - 39698072
Alignment:
Q  20 caaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 97  Q
    ||||||| ||||||||| |||  | |||||||||| ||||| ||  |||||| ||||||||||||||||| |||||||    
T  39697995 caaattggtggtggtttgatagtaccaaatttatgccaagataggagaactaaagtctagaaaaaactcaaacgtgta 39698072  T

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