View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_35 (Length: 217)
Name: NF18013_high_35
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_35 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 1888021 - 1888207
Alignment:
| Q |
12 |
gcagagaaaaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
111 |
Q |
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| T |
1888021 |
gcagagaaaaatccaagtgagctcctcctttcagttctagaggagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
1888120 |
T |
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| Q |
112 |
ccgagaacaatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggtaattgctgtgtgcttga |
198 |
Q |
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| T |
1888121 |
ccgagaacaatgttgacgcttggcggcgtgcagcattttttgaagaaaccggtgagacttacaaaagggtaattgctgtgtgcttga |
1888207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 198
Target Start/End: Complemental strand, 1670466 - 1670280
Alignment:
| Q |
12 |
gcagagaaaaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
111 |
Q |
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| T |
1670466 |
gcagagaaaaatccaagtgagctcctcctttcagttctacagcggagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
1670367 |
T |
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| Q |
112 |
ccgagaacaatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggtaattgctgtgtgcttga |
198 |
Q |
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| T |
1670366 |
ccgagaacaatgttgacgcttggcggcgtgcggcaatttttgaaaaaaccggtcagacttacaaattggtaattgctgtgtgcttga |
1670280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 1891241 - 1891421
Alignment:
| Q |
20 |
aaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccgagaac |
119 |
Q |
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| T |
1891241 |
aaatccaagtgacctcctcctttcagctctggaggagagtaatccaacatctcttcttcgatatcatgcttatcttgacctctgtatggtttccgagaac |
1891340 |
T |
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| Q |
120 |
aatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggta---attgctgtgtgcttga |
198 |
Q |
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| T |
1891341 |
aatgttgatgcttggcggcgtgcggcattttttgaagaaaccggtgagacttac-aaagggtaattattgctgtgtgcttga |
1891421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 5996859 - 5997037
Alignment:
| Q |
20 |
aaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccgagaac |
119 |
Q |
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| T |
5996859 |
aaatccaagtgagcacctcctttcagctctggaggagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccgagaac |
5996958 |
T |
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| Q |
120 |
aatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggtaattgctgtgtgcttga |
198 |
Q |
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| T |
5996959 |
aatgttgatacttggcggcgtgcggcatttttcgaagaaacgggtgagacttacaaaagggtaattgctgtgtgcttga |
5997037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 8356 - 8172
Alignment:
| Q |
15 |
gagaaaaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccg |
114 |
Q |
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| T |
8356 |
gagaaaaatccaagtgagctcctcctttcagttctggagaagagtaacccaacatctcttctttgatatcatgcttatcttgatctctgtatggtctccg |
8257 |
T |
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| Q |
115 |
agaacaatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgaga-cctacaaaagggtaattgctgtgtgcttga |
198 |
Q |
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| T |
8256 |
agaacaatgttgacacttggcggtgtgcggcatttttcgaagaaaccggtgagattttacaaaagcgtaattgctgtgtgcttga |
8172 |
T |
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