View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_high_4 (Length: 617)

Name: NF18013_high_4
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_high_4
NF18013_high_4
[»] chr1 (44 HSPs)
chr1 (449-601)||(13120774-13120928)
chr1 (454-605)||(17674267-17674420)
chr1 (449-605)||(22386744-22386903)
chr1 (449-605)||(44836633-44836787)
chr1 (454-605)||(24556804-24556957)
chr1 (459-605)||(42740108-42740256)
chr1 (449-605)||(37873665-37873828)
chr1 (540-603)||(50371134-50371197)
chr1 (449-602)||(27703437-27703592)
chr1 (297-384)||(24557023-24557110)
chr1 (540-602)||(12971407-12971469)
chr1 (540-601)||(12884138-12884199)
chr1 (540-601)||(18127938-18127999)
chr1 (540-601)||(33124631-33124692)
chr1 (297-384)||(17674110-17674197)
chr1 (454-529)||(26486286-26486361)
chr1 (540-602)||(5560484-5560546)
chr1 (540-594)||(6150730-6150784)
chr1 (290-384)||(37873505-37873599)
chr1 (540-601)||(10109722-10109783)
chr1 (540-601)||(25930606-25930667)
chr1 (540-601)||(30899658-30899719)
chr1 (540-601)||(48722371-48722432)
chr1 (540-601)||(50552497-50552558)
chr1 (454-601)||(9-160)
chr1 (540-602)||(30004908-30004970)
chr1 (290-384)||(42740326-42740420)
chr1 (540-594)||(51110102-51110156)
chr1 (540-594)||(52055561-52055615)
chr1 (540-601)||(20905288-20905349)
chr1 (543-600)||(38263867-38263924)
chr1 (546-602)||(3907472-3907528)
chr1 (543-594)||(14084705-14084756)
chr1 (159-198)||(25271713-25271752)
chr1 (540-601)||(28885672-28885733)
chr1 (540-601)||(29208099-29208160)
chr1 (558-601)||(32810370-32810413)
chr1 (540-594)||(17487284-17487338)
chr1 (302-380)||(22386597-22386675)
chr1 (291-384)||(26486125-26486218)
chr1 (540-580)||(1269574-1269614)
chr1 (540-594)||(9777422-9777477)
chr1 (540-602)||(15441291-15441354)
chr1 (540-592)||(6333517-6333569)
[»] chr5 (34 HSPs)
chr5 (454-605)||(17325842-17325996)
chr5 (454-601)||(18873459-18873611)
chr5 (478-605)||(138142-138270)
chr5 (449-605)||(10033544-10033702)
chr5 (540-602)||(42291882-42291944)
chr5 (298-375)||(17326075-17326152)
chr5 (449-599)||(7390309-7390460)
chr5 (540-602)||(20975986-20976048)
chr5 (540-602)||(43511619-43511681)
chr5 (540-601)||(13656212-13656273)
chr5 (540-605)||(16515522-16515587)
chr5 (540-601)||(19099315-19099376)
chr5 (296-384)||(16515726-16515814)
chr5 (540-602)||(3349730-3349792)
chr5 (540-602)||(10591274-10591336)
chr5 (540-602)||(17513937-17513999)
chr5 (540-602)||(40956314-40956376)
chr5 (540-601)||(12661311-12661372)
chr5 (540-601)||(13474632-13474693)
chr5 (540-601)||(29156192-29156253)
chr5 (540-602)||(4734583-4734645)
chr5 (540-601)||(13423866-13423927)
chr5 (540-601)||(26377775-26377836)
chr5 (540-603)||(5829385-5829446)
chr5 (296-384)||(7390156-7390244)
chr5 (542-601)||(36718570-36718629)
chr5 (548-602)||(27351350-27351404)
chr5 (547-600)||(33281677-33281730)
chr5 (294-384)||(8379197-8379286)
chr5 (540-602)||(40779193-40779254)
chr5 (297-338)||(931636-931677)
chr5 (291-383)||(3349479-3349571)
chr5 (454-518)||(16515592-16515656)
chr5 (558-602)||(37029051-37029095)
[»] chr7 (36 HSPs)
chr7 (454-604)||(36438264-36438416)
chr7 (449-605)||(7366685-7366843)
chr7 (449-605)||(26633361-26633519)
chr7 (449-605)||(40737908-40738057)
chr7 (478-601)||(18895334-18895459)
chr7 (540-602)||(26282543-26282605)
chr7 (540-602)||(40001697-40001759)
chr7 (540-605)||(9479125-9479190)
chr7 (540-601)||(33910066-33910127)
chr7 (302-384)||(7370013-7370094)
chr7 (540-601)||(4099970-4100031)
chr7 (540-601)||(7636327-7636388)
chr7 (540-601)||(18015583-18015644)
chr7 (540-601)||(36796373-36796434)
chr7 (540-601)||(46221704-46221765)
chr7 (540-594)||(12251289-12251343)
chr7 (542-608)||(30739118-30739184)
chr7 (540-602)||(41908179-41908241)
chr7 (540-601)||(773885-773946)
chr7 (540-601)||(6380085-6380146)
chr7 (540-601)||(11672588-11672649)
chr7 (454-594)||(32956784-32956927)
chr7 (540-601)||(44894030-44894091)
chr7 (541-600)||(42312012-42312071)
chr7 (540-594)||(1366018-1366072)
chr7 (540-594)||(8358295-8358349)
chr7 (544-601)||(42161125-42161182)
chr7 (303-359)||(40737760-40737816)
chr7 (454-529)||(40841157-40841233)
chr7 (543-601)||(33419121-33419180)
chr7 (549-603)||(25061903-25061957)
chr7 (540-592)||(44876156-44876208)
chr7 (306-384)||(36438117-36438194)
chr7 (541-594)||(41852302-41852355)
chr7 (302-338)||(4100228-4100264)
chr7 (296-383)||(40001466-40001553)
[»] chr3 (37 HSPs)
chr3 (455-605)||(50677228-50677380)
chr3 (449-605)||(46904740-46904898)
chr3 (475-605)||(36538120-36538252)
chr3 (449-605)||(42009170-42009328)
chr3 (449-605)||(7767061-7767222)
chr3 (457-605)||(51146936-51147085)
chr3 (449-605)||(27303185-27303341)
chr3 (540-594)||(25599087-25599141)
chr3 (540-601)||(41707056-41707117)
chr3 (540-601)||(51939557-51939618)
chr3 (540-602)||(48627030-48627092)
chr3 (454-601)||(52655034-52655185)
chr3 (540-601)||(13401461-13401522)
chr3 (540-601)||(28132736-28132797)
chr3 (540-601)||(46791698-46791759)
chr3 (540-601)||(8364174-8364235)
chr3 (540-601)||(18408193-18408254)
chr3 (540-601)||(21784785-21784846)
chr3 (540-601)||(29387755-29387816)
chr3 (296-384)||(46904963-46905051)
chr3 (540-602)||(40152130-40152193)
chr3 (540-601)||(23164573-23164634)
chr3 (291-356)||(27303436-27303501)
chr3 (296-384)||(7767287-7767375)
chr3 (540-602)||(21596336-21596398)
chr3 (540-601)||(24252622-24252683)
chr3 (548-601)||(54430554-54430607)
chr3 (551-602)||(1649843-1649894)
chr3 (543-602)||(19965884-19965943)
chr3 (297-384)||(42009039-42009126)
chr3 (291-338)||(51147205-51147252)
chr3 (544-601)||(23067730-23067787)
chr3 (540-600)||(20762052-20762112)
chr3 (484-529)||(15987276-15987321)
chr3 (540-601)||(27729770-27729831)
chr3 (558-603)||(43905862-43905907)
chr3 (291-339)||(48626779-48626827)
[»] chr2 (35 HSPs)
chr2 (449-603)||(13997314-13997469)
chr2 (449-605)||(29480545-29480703)
chr2 (449-605)||(1418907-1419065)
chr2 (455-604)||(38599401-38599551)
chr2 (477-605)||(39081396-39081525)
chr2 (285-384)||(13997534-13997633)
chr2 (457-605)||(36059821-36059971)
chr2 (540-601)||(19367420-19367481)
chr2 (540-601)||(41096539-41096600)
chr2 (540-602)||(15457501-15457563)
chr2 (454-601)||(26151658-26151809)
chr2 (540-601)||(2063807-2063868)
chr2 (540-601)||(6530661-6530722)
chr2 (455-527)||(38599593-38599665)
chr2 (296-384)||(39081617-39081704)
chr2 (540-602)||(21747231-21747293)
chr2 (540-602)||(38985710-38985772)
chr2 (540-601)||(4855995-4856056)
chr2 (540-601)||(7993634-7993695)
chr2 (540-601)||(13020425-13020486)
chr2 (540-601)||(18172941-18173002)
chr2 (540-601)||(18676312-18676373)
chr2 (540-603)||(27302529-27302592)
chr2 (544-602)||(18916059-18916117)
chr2 (540-585)||(17117646-17117691)
chr2 (540-601)||(34061857-34061918)
chr2 (540-601)||(42411559-42411620)
chr2 (540-601)||(45618979-45619039)
chr2 (540-601)||(45042391-45042455)
chr2 (540-601)||(25222325-25222386)
chr2 (541-602)||(31273168-31273229)
chr2 (307-342)||(1419172-1419207)
chr2 (291-374)||(29480386-29480469)
chr2 (540-585)||(42759757-42759802)
chr2 (296-384)||(36059660-36059748)
[»] chr8 (28 HSPs)
chr8 (449-601)||(3628655-3628809)
chr8 (455-585)||(36515069-36515202)
chr8 (540-602)||(34523952-34524014)
chr8 (540-601)||(3471602-3471663)
chr8 (449-601)||(32098085-32098240)
chr8 (454-607)||(42076104-42076260)
chr8 (540-602)||(12531560-12531622)
chr8 (540-602)||(23567275-23567337)
chr8 (540-601)||(18112118-18112179)
chr8 (540-601)||(18420610-18420671)
chr8 (540-601)||(43926324-43926385)
chr8 (540-592)||(5869323-5869375)
chr8 (540-601)||(1004060-1004122)
chr8 (540-601)||(13585301-13585362)
chr8 (540-601)||(43968071-43968132)
chr8 (540-604)||(35874925-35874989)
chr8 (540-602)||(39697939-39698001)
chr8 (540-601)||(27074576-27074637)
chr8 (290-359)||(35875147-35875216)
chr8 (544-601)||(42951774-42951831)
chr8 (454-602)||(29372358-29372508)
chr8 (540-594)||(30915288-30915343)
chr8 (305-384)||(42076330-42076408)
chr8 (540-601)||(7858087-7858148)
chr8 (540-601)||(44665047-44665108)
chr8 (296-339)||(33453021-33453064)
chr8 (305-351)||(18112378-18112424)
chr8 (291-365)||(36514905-36514978)
[»] chr6 (25 HSPs)
chr6 (449-605)||(3748476-3748634)
chr6 (449-578)||(6294279-6294410)
chr6 (540-601)||(628096-628157)
chr6 (540-601)||(2618357-2618418)
chr6 (540-601)||(12614717-12614778)
chr6 (457-605)||(30915277-30915432)
chr6 (540-602)||(31861002-31861064)
chr6 (449-601)||(21946109-21946261)
chr6 (540-594)||(29401149-29401203)
chr6 (540-601)||(6754208-6754269)
chr6 (540-601)||(14893418-14893479)
chr6 (540-602)||(1690634-1690696)
chr6 (548-594)||(22503752-22503798)
chr6 (454-601)||(29149405-29149556)
chr6 (540-594)||(29308468-29308522)
chr6 (540-601)||(57690-57751)
chr6 (540-601)||(6360762-6360822)
chr6 (540-601)||(7525167-7525228)
chr6 (540-601)||(3514851-3514912)
chr6 (303-384)||(3748329-3748411)
chr6 (558-602)||(31234912-31234956)
chr6 (540-591)||(19231624-19231675)
chr6 (540-594)||(1093042-1093095)
chr6 (558-602)||(1327594-1327638)
chr6 (302-338)||(22504011-22504047)
[»] chr4 (29 HSPs)
chr4 (449-605)||(35653888-35654046)
chr4 (540-601)||(32130791-32130852)
chr4 (454-605)||(22423682-22423837)
chr4 (540-601)||(41038252-41038313)
chr4 (449-603)||(21791456-21791611)
chr4 (540-602)||(34982225-34982287)
chr4 (540-601)||(23426167-23426228)
chr4 (540-601)||(45172646-45172707)
chr4 (455-603)||(10575437-10575587)
chr4 (454-602)||(5545330-5545481)
chr4 (540-601)||(19661381-19661442)
chr4 (540-605)||(43154789-43154854)
chr4 (540-601)||(44478041-44478102)
chr4 (540-601)||(53011714-53011775)
chr4 (540-604)||(24449125-24449189)
chr4 (540-594)||(11681743-11681797)
chr4 (540-594)||(11690022-11690076)
chr4 (540-594)||(55134217-55134271)
chr4 (290-359)||(24449347-24449416)
chr4 (544-601)||(27632400-27632457)
chr4 (540-601)||(28463589-28463650)
chr4 (549-601)||(16072596-16072648)
chr4 (540-601)||(23256596-23256657)
chr4 (540-601)||(29579882-29579943)
chr4 (296-384)||(35653735-35653823)
chr4 (540-601)||(29221622-29221683)
chr4 (302-340)||(22423938-22423976)
chr4 (291-379)||(23256825-23256911)
chr4 (454-529)||(41038327-41038403)
[»] scaffold0126 (1 HSPs)
scaffold0126 (542-601)||(16712-16771)
[»] scaffold0181 (1 HSPs)
scaffold0181 (540-601)||(17133-17194)
[»] scaffold0606 (1 HSPs)
scaffold0606 (543-601)||(8399-8457)
[»] scaffold0100 (1 HSPs)
scaffold0100 (540-601)||(46174-46235)
[»] scaffold0564 (2 HSPs)
scaffold0564 (454-529)||(1138-1214)
scaffold0564 (540-578)||(1086-1124)
[»] scaffold0035 (2 HSPs)
scaffold0035 (543-578)||(22809-22844)
scaffold0035 (454-529)||(22716-22792)


Alignment Details
Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 449 - 601
Target Start/End: Original strand, 13120774 - 13120928
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||            |||| ||    
T  13120774 gagaggtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaaggggaaaatgaatggtttatgcgaaaaagaaataattgtggt 13120873  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13120874 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 13120928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 454 - 605
Target Start/End: Original strand, 17674267 - 17674420
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattc 551  Q
    |||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||| |||||||||||||            ||||||||||||    
T  17674267 gtgaaatttacctaacggtgtcatttggaatgtcactcttacgtcgtaggaaaggggaaaacaaatggtttatgcgaaaaagaaataattgttgtgattc 17674366  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17674367 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 17674420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 22386744 - 22386903
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttg 545  Q
    |||| ||||||||||  ||||| |  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||           |   |||||    
T  22386744 gagatgtgaaatttatttaacgatgtcgtttggaatgtcactcctacgtcgtaggaaaggggaaaacaaatggtttatgcaaaaaaaatattaattgttg 22386843  T
Q  546 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22386844 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattgttcaaattgatg 22386903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 44836633 - 44836787
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnttgttgtga 548  Q
    |||| |||||||||||||| ||||  | |||||||||||||||||||||||| |||||||| |||||||||||||||||||           || |||||    
T  44836633 gagatgtgaaatttacctagcggtgtcatttggaatgtcactcctacgtcgtgggaaagggaaaaacgaatggtttatgcgaaaaagaaa--tgatgtga 44836730  T
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44836731 ttctttcagtgaaatagtttttcaaattgactgattaagtgattatacaaattgatg 44836787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 454 - 605
Target Start/End: Complemental strand, 24556957 - 24556804
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattc 551  Q
    |||||||||||||||||||  |||||||||||||||||||||||  |||||||  | |||||||||||||||||||            ||||||||||||    
T  24556957 gtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtgataggaaaaagaaaaacgaatggtttatgcgaaaaagaaataattgttgtgattc 24556858  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24556857 tttaaatgaaatagtttttcaaattgacttattaagtgattattcaaattgatg 24556804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 459 - 605
Target Start/End: Complemental strand, 42740256 - 42740108
Alignment:
Q  459 atttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgattctttca 556  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||            |||||| ||||||||||    
T  42740256 atttacctaacagtttcatttggaatgtcactcctacgtcgtaggaaaggggaaaacgaattgtttatgcgaaaaagaaataattgttgcgattctttca 42740157  T
Q  557 atgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  42740156 atgaaatagtttttcaaattgactaattaagttattatacaaattgatg 42740108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 37873665 - 37873828
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgta-----ggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--tt 541  Q
    |||| ||||||||||| |||| ||  ||||||| |||||||||||||||||||     ||||||||||||||||||||||||||| |           ||    
T  37873665 gagaggtgaaatttacgtaacagtgtcgtttggcatgtcactcctacgtcgtatcgtaggaaaggggaaaacgaatggtttatgcagaaaagaaataatt 37873764  T
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||    
T  37873765 gttgtgattctttcaatgaaacagtttttcaaattaactgattaagtgactatacaaattgatg 37873828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 540 - 603
Target Start/End: Complemental strand, 50371197 - 50371134
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  50371197 ttgttgtgattctttcaatgaaacagtttttcaaattgactgattaagtgattatacaaattga 50371134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 449 - 602
Target Start/End: Original strand, 27703437 - 27703592
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||| ||  |||||||| |||||||| | ||| || | |||||| |||||||||||||||||||            |||||||    
T  27703437 gagaggtgaaatttacctaacagtgtcgtttggattgtcactcttccgtggtggaaaagggaaaaacgaatggtttatgcgaaaatgaaatgattgttgt 27703536  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||    
T  27703537 gattctttcgatgaaatagctttccaaattgactgattaagtgattatacaaattg 27703592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 24557110 - 24557023
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||| || | ||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||    
T  24557110 cgtttatatgaaatatgatgctcgattctatttttaaaataggtcctagtaaaatcaaaacgcaattctttttgtgtagctaagcttc 24557023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 12971469 - 12971407
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  12971469 ttgttgtgattctttcgatgaaatagcttttcaaattgactgattaagtgattatacaaattg 12971407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 12884138 - 12884199
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  12884138 ttgttgtgattctttcaatgaaatagctttttaaattgactgattaagtgattatacaaatt 12884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 18127938 - 18127999
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  18127938 ttgttgtgattcttgcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 18127999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 33124631 - 33124692
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||    
T  33124631 ttgttgtgattctttcaatgaaatagcttttcaaattgacttattaagtgattatacaaatt 33124692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 17674110 - 17674197
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| |||||||||| ||||||||  ||||||||||||||||| || || ||||||||||| ||||||||| ||||||||||| ||||    
T  17674110 cgttcctatgaaataagaggttcgactctatttttaaaataggctccagtaaaatcaaaacacaattctttttgtgtagttaaacttc 17674197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 26486286 - 26486361
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    |||||||||||| ||||||  | |||||||||||||| |||||||||||||||| ||||||||||| |||||||||    
T  26486286 gtgaaatttaccaaacggtgtcatttggaatgtcacttctacgtcgtaggaaagaggaaaacgaatagtttatgcg 26486361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 5560546 - 5560484
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||||||| |||||||    
T  5560546 ttgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattg 5560484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 6150784 - 6150730
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  6150784 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaaatgattat 6150730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 37873505 - 37873599
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||  | || ||||| |||| | |||| ||| ||||||||||||||||    
T  37873505 gcagggccgtttctatgaaataggaggctcgattctatttttaaaataggccccagtaaaataaaaatgtaattttttgtgtgtagttaagcttc 37873599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 10109783 - 10109722
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||    
T  10109783 ttgttgtgattctttcaatgaaattgctttccaaattgactgattaagtgattatacaaatt 10109722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 25930667 - 25930606
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||    
T  25930667 ttgttgtgatcctttcaatgaaatagcttttcaagttgactgattaagtgattatacaaatt 25930606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 30899719 - 30899658
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||    
T  30899719 ttgttgtgattctttcaatgaaatagctttccaaattgactaattaagtgattatacaaatt 30899658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 48722371 - 48722432
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  48722371 ttgttgtgattatttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 48722432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 50552558 - 50552497
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||    
T  50552558 ttgttgtgattctttcaatgaaataacttttcaaattgaccgattaagtgattatacaaatt 50552497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 454 - 601
Target Start/End: Complemental strand, 160 - 9
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    |||||||||| ||||||||  |||||||| | |||||||||  || |||| |||||| |||||||||||||||||||          |   |||||||||    
T  160 gtgaaatttatctaacggtgtcgtttggatttgtcactcctctgttgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgat 61  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||   ||| |||||||||||||||||||||||| ||||||    
T  60 tctttcaatgaaatcactttccaaattgactgattaagtgattatacaaatt 9  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 30004908 - 30004970
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||| ||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||    
T  30004908 ttgttgcgattctttcaatgaaatagcttttcaaattaattgattaagtgattatacaaattg 30004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 384
Target Start/End: Complemental strand, 42740420 - 42740326
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||  | || ||||| |||||| |||| ||| ||||| ||||| ||||    
T  42740420 gcagggccgttcctatgaaataggaggctcggttctatttttaaaataggccccagtaaaataaaaacgtaattttttttgtgtggttaaacttc 42740326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 51110102 - 51110156
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||| |||  |||||||||||||||||||||||    
T  51110102 ttgttgtgattctttcaatgaaatagctttctaaattgactgattaagtgattat 51110156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 52055615 - 52055561
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  52055615 ttgttgtgattctttcaatgaaatagctttccaaattgattgattaagtgattat 52055561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 20905288 - 20905349
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||||  || |||||||||||| ||||||||||| ||||||    
T  20905288 ttgttgtgattctttcaatgaaatagacttccaaattgactgaataagtgattatacaaatt 20905349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 38263924 - 38263867
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaat 600  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||    
T  38263924 ttgtgattctatcaatgaaatagttttttaaattgactgattaagtaataattcaaat 38263867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 3907528 - 3907472
Alignment:
Q  546 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||    
T  3907528 tgattctttcaatgaaataatttttcaaattgattgattaaatgattatacaaattg 3907472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 594
Target Start/End: Original strand, 14084705 - 14084756
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||||    
T  14084705 ttgtgattctttcaatgaaatagctttctaaattgactgattaagtgattat 14084756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 25271713 - 25271752
Alignment:
Q  159 aatctatgttaattttacatcaagtttatcatgctacttt 198  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25271713 aatctatgttaattttacatcaagtttatcatgctacttt 25271752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 28885672 - 28885733
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||| ||||||||||| |||  ||||||| ||||||||||||||| ||||||    
T  28885672 ttgttgtgattcttacaatgaaatagctttcaaaattgattgattaagtgattatacaaatt 28885733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 29208099 - 29208160
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||||  || || ||||||||||||| ||||||| ||||||    
T  29208099 ttgttgtgattctttcaatgaaatagacttccagattgactgattaaatgattatacaaatt 29208160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 558 - 601
Target Start/End: Original strand, 32810370 - 32810413
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  32810370 tgaaatagcttttcaaattgattgattaagtgattattcaaatt 32810413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 17487284 - 17487338
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||  ||| |||||||| | |||||||||||||    
T  17487284 ttgttgtgattctttcaatgaaataactttccaaattgatttattaagtgattat 17487338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 380
Target Start/End: Original strand, 22386597 - 22386675
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaag 380  Q
    ||||||||||||||| |||||| |||||||||||||||    || |||||||||| |||||| ||| | ||||||||||    
T  22386597 ctatgaaataggaggctcggttttatttttaaaataggccgcagtaaaatcaaaatgcaattttttttttgtagttaag 22386675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 26486125 - 26486218
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| ||||| |||| |||||||||| ||||||||||||| ||||||||  | || ||||| |||| ||| || ||| ||||||| ||||||||    
T  26486125 cagggccgttcctataaaataggaggctcggttctattttcaaaataggcccgagtaaaataaaaatgcatttttttgtgtgtagctaagcttc 26486218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 580
Target Start/End: Complemental strand, 1269614 - 1269574
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgact 580  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  1269614 ttgttgtgattcttttaatgaaatagcttttcaaattgact 1269574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 9777477 - 9777422
Alignment:
Q  540 ttgttgtgattctttcaat-gaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||  || ||||||||| |||||||||||||||| |||||||||    
T  9777477 ttgttgtgattctttttattgaaatagttattcaaattgactgattgagtgattat 9777422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 15441354 - 15441291
Alignment:
Q  540 ttgttgtgattctttc-aatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||  |||||||||| |||  ||||||| ||||||||||||||| |||||||    
T  15441354 ttgttgtgattctttttaatgaaatagctttataaattgagtgattaagtgattatacaaattg 15441291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 6333517 - 6333569
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgatt 592  Q
    ||||||||||||||| ||| |||||  ||| ||| ||||||||||||||||||    
T  6333517 ttgttgtgattcttttaataaaataactttccaatttgactgattaagtgatt 6333569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 454 - 605
Target Start/End: Complemental strand, 17325996 - 17325842
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgattc 551  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||    
T  17325996 gtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaaggggaaagcgaatggtttatgcgaaaaagaaataattgttgtgattc 17325897  T
Q  552 tttcaatgaaatag-tttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  17325896 tttcaatgaaatagttttttcaaattgactgattaagtgattattcaaatcgatg 17325842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 454 - 601
Target Start/End: Complemental strand, 18873611 - 18873459
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacg---aatggtttatgcg--gnnnnnnnnnttgttgtga 548  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||            |||||||||    
T  18873611 gtgaaatttacctaacggtttcgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaataatggtttatgcgaaaaagaaataattgttgtga 18873512  T
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| ||||||    
T  18873511 ttctttcaatgaaatagcttttcaaattggctgattaagtggttatacaaatt 18873459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 478 - 605
Target Start/End: Complemental strand, 138270 - 138142
Alignment:
Q  478 ttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattctttcaatgaaatagtttttcaaat 575  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||||           ||||||||||| |||||||||||||| |||||||||    
T  138270 ttggaatgtcactactacttcgtag-aaaggggaaaacgaatggtttatgcggaaaaaaaataattgttgtgattatttcaatgaaatagcttttcaaat 138172  T
Q  576 tgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| ||||||||||    
T  138171 tgactgattaagtgattatacaaattgatg 138142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 10033702 - 10033544
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||            || ||||    
T  10033702 gagaggtgaaatttacctaacggtttcgtttggaatgtcactcctacgtcgtaggaaa-gggaaaacgaatggtttatgcgaaaaagaaataattattgt 10033604  T
Q  547 gattctttcaatgaaatagtttttcaaattgac-tgattaagtgattattcaaattgatg 605  Q
    |||||||||||| |||||| ||||||||||||| | | | ||||||||| ||||||||||    
T  10033603 gattctttcaataaaatagcttttcaaattgactttaatcagtgattatacaaattgatg 10033544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 42291882 - 42291944
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  42291882 ttgttgtgattctttcaatgaaatagattttcaaattgactgattaagtgattatacaaattg 42291944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 17326152 - 17326075
Alignment:
Q  298 gtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtag 375  Q
    |||||||||||||| |||| |||||||||||||||||||||| || || ||||||||||||||||||||| |||||||    
T  17326152 gtttctatgaaatatgaggctcggttctatttttaaaataggctccagtaaaatcaaaacgcaattctttttgtgtag 17326075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 599
Target Start/End: Original strand, 7390309 - 7390460
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||| ||||||||  |||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||            |||| ||    
T  7390309 gagaggtgaaatttatctaacggtgtcgtttg-aatgtcacttctatgtcgcaggaaaggggaaaacgaatggtttatgcgaaaaagaaataattgtcgt 7390407  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaa 599  Q
    ||||||||| ||||||||  |||| ||||||||||||||||||||||| ||||    
T  7390408 gattctttcgatgaaataactttttaaattgactgattaagtgattatacaaa 7390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 20976048 - 20975986
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  20976048 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaaatgattatacaaattg 20975986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 43511681 - 43511619
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||    
T  43511681 ttgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattatacaaattg 43511619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 13656273 - 13656212
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  13656273 ttgttgtgattctttcaatgaaataacttttcaaattgactgattaagtgattatacaaatt 13656212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 16515587 - 16515522
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||    
T  16515587 ttgttgtgattctttcaataaaataatttttcaaattgattgattaagtgattattaaaattgatg 16515522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 19099315 - 19099376
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  19099315 ttgttgtgattctttcaatgaaatagctttttaaattgactgattaagtgattatacaaatt 19099376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 16515814 - 16515726
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | || ||||| |||||||| || ||| ||||||| ||||||||    
T  16515814 ccgttcctatgaaataggaggttcggttctatttttaaaataggcccgagtaaaataaaaacgcatttttttgtgtgtagctaagcttc 16515726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 3349730 - 3349792
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||    
T  3349730 ttgttgtgattctttctatgaaatagcttttcaaattgactgattaagtcattattccaattg 3349792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 10591274 - 10591336
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||||||||| |||||||    
T  10591274 ttgttgtgattctttcaatgaaataacttttcaaattaactgattaagtgattatacaaattg 10591336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 17513937 - 17513999
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||    
T  17513937 ttgttgtgattctttcagtgaaataacttttcaaattgactgattaagtgattatacaaattg 17513999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 40956376 - 40956314
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||    
T  40956376 ttgttgtgattcttttaatgaaatagtttttcaaattaaatgattaagtgattatacaaattg 40956314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 12661372 - 12661311
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||    
T  12661372 ttgttgtgattctttcaatgaaatagctttccaaattgactggttaagtgattatacaaatt 12661311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 13474693 - 13474632
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||| ||||||    
T  13474693 ttgttgtgattctttcaatgaaacaacttttcaaattgactgattaagtgattatacaaatt 13474632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 29156253 - 29156192
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||    
T  29156253 ttgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaatt 29156192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 4734583 - 4734645
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||| |||| ||| |||||| |||||||    
T  4734583 ttgttgtgattctttcaatgaaatagattttcaaattgagtgatcaagggattatacaaattg 4734645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 13423927 - 13423866
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||  ||||||| ||||||||||||||| ||||||    
T  13423927 ttgttgtgattctttcaatgaaatagctttctaaattgattgattaagtgattatacaaatt 13423866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 26377775 - 26377836
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| || ||| ||||||||| ||||||||||| ||||||    
T  26377775 ttgttgtgattctttcaatgaaatagcttctcacattgactgaataagtgattatacaaatt 26377836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 540 - 603
Target Start/End: Complemental strand, 5829446 - 5829385
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||||||||||| ||||||||    
T  5829446 ttgttgtgattcttttaatgaaatagcttt--aaattgactgattaagtgattatacaaattga 5829385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 7390156 - 7390244
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||   |||  ||||| |||||| |||| ||| ||||||| ||||||||    
T  7390156 ccgttcctatgaaatagaaggctcggttctatttttaaaatagtccctaataaaataaaaacgtaattttttgtgtgtagctaagcttc 7390244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 542 - 601
Target Start/End: Original strand, 36718570 - 36718629
Alignment:
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||| ||||||| ||||||    
T  36718570 gttgtgattctttcaataaaataactttacaaattgactgattaaatgattatacaaatt 36718629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 548 - 602
Target Start/End: Complemental strand, 27351404 - 27351350
Alignment:
Q  548 attctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||  ||| ||||||||||||||||||| |||| |||||||    
T  27351404 attctttcaatgaaataactttccaaattgactgattaagtggttatacaaattg 27351350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 33281730 - 33281677
Alignment:
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaat 600  Q
    ||||||||||||||||||  |||| ||||||||| ||||||||||||| |||||    
T  33281730 gattctttcaatgaaataactttttaaattgactaattaagtgattatacaaat 33281677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 384
Target Start/End: Original strand, 8379197 - 8379286
Alignment:
Q  294 gaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||||||  ||||||||||||| ||||| ||| ||||||||||||| ||||| ||||| |||| | | || ||| |||||||||| |||||    
T  8379197 gaccgttcttatgaaataggagattcggctctctttttaaaatagg-tctagtaaaataaaaatggatttttttttgtgtagttatgcttc 8379286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 40779254 - 40779193
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||| | ||||| |||||||||||||||||||| |||||  |||||| |||||||    
T  40779254 ttgttgtgattcct-caatggaatagtttttcaaattgacttattaaacgattatacaaattg 40779193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 931677 - 931636
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaatag 338  Q
    |||| |||||||||||||||||||| ||| ||||||||||||    
T  931677 cgttcctatgaaataggaggttcggctctctttttaaaatag 931636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 3349479 - 3349571
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggt-tctaggaaaatcaaaacgcaattctttctgtgtagttaagctt 383  Q
    |||||||||  ||||||||||||||| |||| ||| | |||||||||||| || |  ||||| ||||||||||| ||| ||||||| |||||||    
T  3349479 caggaccgtccctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacgcaatt-tttttgtgtagctaagctt 3349571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 518
Target Start/End: Complemental strand, 16515656 - 16515592
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaa 518  Q
    |||||||||| |||| |||  | ||||||||||||||||||| |||||| |||||| |||| |||    
T  16515656 gtgaaatttagctaatggtgtcatttggaatgtcactcctacatcgtagaaaagggaaaaaagaa 16515592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 37029051 - 37029095
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||| |||| ||||||| ||||||||||||||| |||||||    
T  37029051 tgaaatagctttttaaattgattgattaagtgattatacaaattg 37029095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 5e-39; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 454 - 604
Target Start/End: Original strand, 36438264 - 36438416
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgattc 551  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||||||||| |            ||||||||||||    
T  36438264 gtgaaatttacctaacggtgtcatttggaatgtcactcctacgtcgtaggaaaagggaaaacgaatggtttatgtgaaaaataaattattgttgtgattc 36438363  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgat 604  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  36438364 tttcaatgaaatggtttttcaaattgactgattaagtgattatacaaattgat 36438416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 7366843 - 7366685
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| ||||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||            |||||||    
T  7366843 gagaggtgaaatttaccttacggtgtcgtttggaatgtcactcctacgtcgcaggaaaggggaaaatgaatggtttatgcgaaaaagaaataattgttgt 7366744  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||    
T  7366743 gattctttcaataaaatagtttttcaaattgacaaattaagtaattattcaaattgatg 7366685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 26633519 - 26633361
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||||||||| |||||||  ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||            |||||||    
T  26633519 gagaggtgaaatttacttaacggtgtcgtttggaatgtcactcatacgtcgtgggaaagggaaaaatgaatggtttatgcgaaaaagaaatgattgttgt 26633420  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  26633419 gattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatg 26633361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 40737908 - 40738057
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnttgttgtga 548  Q
    |||| |||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||| |||||||||            |||||||    
T  40737908 gagaggtgaaatttacctaacggtgtcatttgaaatgtcactcctacgtcgtaggaaaggggaaaacgaatagtttatgcgaaaaa-------gttgtga 40738000  T
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||| |||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  40738001 ttctttcaataaaatagctttttaaattgactgattaagtaattatacaaattgatg 40738057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 478 - 601
Target Start/End: Original strand, 18895334 - 18895459
Alignment:
Q  478 ttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgattctttcaatgaaatagtttttcaaat 575  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||            |||||||||||||||||||||||||  |||| ||||    
T  18895334 ttggaatgtcactcctacgtcgtaggtaaggggaaaacgaattgtttatgcgaaaaggaaataattgttgtgattctttcaatgaaataactttttaaat 18895433  T
Q  576 tgactgattaagtgattattcaaatt 601  Q
    ||||||||||| ||||||| ||||||    
T  18895434 tgactgattaattgattatacaaatt 18895459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 26282543 - 26282605
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  26282543 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattg 26282605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 40001697 - 40001759
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  40001697 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattg 40001759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 605
Target Start/End: Complemental strand, 9479190 - 9479125
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  9479190 ttgttgtgattctttcaacgaaatagttttttaaattgactgattaagtaattatacaaattgatg 9479125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 33910127 - 33910066
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||    
T  33910127 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagcgattatacaaatt 33910066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 7370094 - 7370013
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  ||||||  ||||||||    
T  7370094 ctatgaaataggaggctcggttctatttttaaaata-gatctagtaaaatcaaaacgcaattcttcttgtgtaactaagcttc 7370013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 4100031 - 4099970
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  4100031 ttgttgtaattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaatt 4099970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 7636327 - 7636388
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  7636327 ttgttgcgattctttcaatgaaatagcttttcaaattgactgattaagtaattatacaaatt 7636388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 18015583 - 18015644
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||||    
T  18015583 ttgttgtgattctttcaatgaaatagctttccaaattgattgattaagtgattatacaaatt 18015644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 36796373 - 36796434
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| ||||||    
T  36796373 ttgttgtgattctttcaatgaaataattttccaaattgactgattaagttattatacaaatt 36796434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 46221704 - 46221765
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||    
T  46221704 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattctacaaatt 46221765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 12251289 - 12251343
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  12251289 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaaatgattat 12251343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 542 - 608
Target Start/End: Complemental strand, 30739184 - 30739118
Alignment:
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatgatg 608  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||  ||||||| ||||    
T  30739184 gttgtgattcttttaatgaaataacttttcaaattgactgattaagtgattataaaaattgaagatg 30739118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 41908241 - 41908179
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||| | |||||||    
T  41908241 ttgttgtgattctttcaatgaaacagcttttctaattgactgattaagtgattgtacaaattg 41908179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 773885 - 773946
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||| ||||||    
T  773885 ttgttgtgattctttcaataaaatagcttttcaaattgactgataaagtaattatacaaatt 773946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 6380085 - 6380146
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||||  || |||||||| ||||||||||||||| ||||||    
T  6380085 ttgttgtgattctttcaatgaaatagacttccaaattgattgattaagtgattatacaaatt 6380146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 11672649 - 11672588
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||| |||||||  ||| |||||||||||||||||||||||| ||||||    
T  11672649 ttgttgtgattctttcattgaaataactttccaaattgactgattaagtgattatacaaatt 11672588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 594
Target Start/End: Complemental strand, 32956927 - 32956784
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgatt 550  Q
    |||||||||||||||| ||  |||||||| | ||||||| | ||| || ||||||||||||||||||||||||||||            |||||||||||    
T  32956927 gtgaaatttacctaacagtgtcgtttggatttgtcactcatccgttgtgggaaaggggaaaacgaatggtttatgcgaaaaagaaatcattgttgtgatt 32956828  T
Q  551 ctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    ||||||||||||||  |||  ||||||||||||||| |||||||    
T  32956827 ctttcaatgaaataactttataaattgactgattaaatgattat 32956784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 44894030 - 44894091
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||| ||||||    
T  44894030 ttgttgtgattctttcaataaaatagctttccaaattgattgattaagtgattatacaaatt 44894091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 541 - 600
Target Start/End: Complemental strand, 42312071 - 42312012
Alignment:
Q  541 tgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaat 600  Q
    |||||||||||||| |||||||||| |||||||||||||| || |||||||||| |||||    
T  42312071 tgttgtgattcttttaatgaaatagcttttcaaattgactaatcaagtgattatacaaat 42312012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 1366072 - 1366018
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||| |||||    
T  1366072 ttgttgtgattctttctatgaaataacttttcaaattgactgattaagtcattat 1366018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 8358295 - 8358349
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    ||||||||||||||||||||| |||  |||| |||||||||||||||||||||||    
T  8358295 ttgttgtgattctttcaatgagataactttttaaattgactgattaagtgattat 8358349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 42161125 - 42161182
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||| ||| |||||| |||||| |||||||||| ||||||    
T  42161125 tgtgattctttcaatgaaatagctttccaaattaactgatcaagtgattatacaaatt 42161182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 40737760 - 40737816
Alignment:
Q  303 tatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgc 359  Q
    |||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||||    
T  40737760 tatgaaataggaggctcggttctatttttaaaatagattcgagtaaaataaaaacgc 40737816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 40841157 - 40841233
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    ||||||||| ||||| |||  |||||||| | |||||| || ||| |||||||||||||||||||||||||||||||    
T  40841157 gtgaaattttcctaatggtctcgtttggatttgtcacttctccgttgtaggaaaggggaaaacgaatggtttatgcg 40841233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 33419121 - 33419180
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgac-tgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||  ||||||||||||| | ||||||||||||| ||||||    
T  33419121 ttgtgattctttcaatgaaataacttttcaaattgacttaattaagtgattatacaaatt 33419180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 549 - 603
Target Start/End: Complemental strand, 25061957 - 25061903
Alignment:
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    ||||||||||||||||| |||||||||| |||||| |||||||| | ||||||||    
T  25061957 ttctttcaatgaaatagcttttcaaattaactgataaagtgattgtacaaattga 25061903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 44876156 - 44876208
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgatt 592  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||| |||||    
T  44876156 ttgttgtgattcttttaatgaaatagctttctaaattgactgattaaatgatt 44876208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 36438117 - 36438194
Alignment:
Q  306 gaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||||||||| ||||||||||||||||||||||    || ||||| |||| |||||| ||| ||||||| ||||||||    
T  36438117 gaaataggaggctcggttctatttttaaaataggcctcagtaaaataaaaatgcaatt-tttgtgtgtagctaagcttc 36438194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 541 - 594
Target Start/End: Original strand, 41852302 - 41852355
Alignment:
Q  541 tgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    ||||| ||||||||||||||||||  | || ||||||||||| |||||||||||    
T  41852302 tgttgcgattctttcaatgaaataactctttaaattgactgagtaagtgattat 41852355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 4100264 - 4100228
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaatag 338  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  4100264 ctatgaaataggaggttcggctctctttttaaaatag 4100228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 383
Target Start/End: Original strand, 40001466 - 40001553
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaatagg-ttctaggaaaatcaaaacgcaattctttctgtgtagttaagctt 383  Q
    |||| ||||||||||||||||||||  ||| | ||||||||||| ||| |  ||||| |||| |||||| ||| |||||||||||||||    
T  40001466 ccgtctctatgaaataggaggttcgactctctatttaaaataggtttccaataaaataaaaatgcaatt-tttttgtgtagttaagctt 40001553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 455 - 605
Target Start/End: Original strand, 50677228 - 50677380
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattct 552  Q
    ||||||||| ||||| ||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||            ||||||||||| |    
T  50677228 tgaaatttatctaacagtttcgtttggaatgtcactcctacatcgtaggaaaggggaaaacgaattgtttatgcgaaaaagaaataattgttgtgattgt 50677327  T
Q  553 ttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50677328 ttcaatgaaatagtttttcaaattgactgattaagtgattatacaaattgatg 50677380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 46904898 - 46904740
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||  || |||||||||             |||||||    
T  46904898 gagaggtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaagggaaaaataaaaggtttatgcaaaaaagaaataattgttgt 46904799  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  46904798 gattctttcaatgaaatagttttttaaattgactgattaagtgattatacaaattgatg 46904740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 475 - 605
Target Start/End: Original strand, 36538120 - 36538252
Alignment:
Q  475 cgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattctttcaatgaaatagtttttca 572  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  36538120 cgtttagaatgtcactcctgcttcgtaggaaaggggaaaacgaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagtttttca 36538219  T
Q  573 aattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||||||||||| ||||||||||    
T  36538220 aattgactgattaagtgattatacaaattgatg 36538252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 42009170 - 42009328
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||| |||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |            |||||||    
T  42009170 gagaggtgaaatttatctaacgatttcgtttggaatgtcactcttacgtcgtaggaaaggggaaaacgaatggtttatgtgaaaaagaaataattgttgt 42009269  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||||    
T  42009270 gattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgatg 42009328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 7767222 - 7767061
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-----ttgt 543  Q
    |||| |||||||||||||||| ||  | |||||||||||||||||||||| ||||||| |||||||||||| ||||||| |               ||||    
T  7767222 gagatgtgaaatttacctaactgtgtcatttggaatgtcactcctacgtcttaggaaatgggaaaacgaatagtttatgtgaagaaaaaaaaataattgt 7767123  T
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  7767122 tgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatg 7767061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 457 - 605
Target Start/End: Complemental strand, 51147085 - 51146936
Alignment:
Q  457 aaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg---gnnnnnnnnnttgttgtgattctt 553  Q
    ||||||||||||||||  |||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||   |         ||||||||||||||    
T  51147085 aaatttacctaacggtgtcgtttggaatgtcacttctatgtcgtagaaaaggg-aaaacgaatggtttatgcgagagaaaaaataattgttgtgattctt 51146987  T
Q  554 tcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  51146986 tcaataaaatagttttttaaattgactgattaagtga-tattcaaattgatg 51146936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 27303341 - 27303185
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||            |||||||    
T  27303341 gagaggtgaaatttacctaatggtgtcgtttg-aatgtcactcctacgtcgtaggaaaggg-aaaacaaatagtttatgcgaaaaagaaataattgttgt 27303244  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  27303243 gattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattgatg 27303185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 25599087 - 25599141
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25599087 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 25599141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 41707056 - 41707117
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  41707056 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatgcaaatt 41707117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 51939557 - 51939618
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  51939557 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 51939618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 48627030 - 48627092
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||    
T  48627030 ttgttgtgattctttcaatgaaatagattttcaaattgactgatcaagtgattatacaaattg 48627092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 454 - 601
Target Start/End: Original strand, 52655034 - 52655185
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    |||||||||| ||||||||| |||||| | | |||||||||| || || | |||||| |||||||||||||||||||          |   |||||||||    
T  52655034 gtgaaatttatctaacggtatcgtttgaatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcgaggaaaaaaatgattgttgtgat 52655133  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  52655134 tctttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 52655185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 13401522 - 13401461
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  13401522 ttgttgtgattcttccaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 13401461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 28132736 - 28132797
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  28132736 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 28132797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 46791698 - 46791759
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  46791698 ttgttgtgattcttgcaatgaaatagttttccaaattgactgattaagtgattatacaaatt 46791759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 8364235 - 8364174
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||||||| ||||||    
T  8364235 ttgttgtgattctttcaatgaaataactttccaaattgactgattaagtgattatacaaatt 8364174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 18408254 - 18408193
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||    
T  18408254 ttgttgtgattctttcaatggattagcttttcaaattgactgattaagtgattatacaaatt 18408193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 21784785 - 21784846
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  21784785 ttgttgtgattctttcaatgaaatagctttccaaattaactgattaagtgattatacaaatt 21784846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 29387755 - 29387816
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||||    
T  29387755 ttgttgtgattctttcaatgaaataacttttcaaattgattgattaagtgattatacaaatt 29387816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 46905051 - 46904963
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||  ||||| ||| |||||||  |||||||    
T  46905051 ccgttcctatgaaataggaggctcggttctatttttaaaataggttccagtaaaataaaaattcaattttttatgtgtagcgaagcttc 46904963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 40152130 - 40152193
Alignment:
Q  540 ttgttgtgattc-tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||    
T  40152130 ttgttgtgattcgttttaatgaaatagtttttcaaattgaccgattaagtgattatacaaattg 40152193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 23164573 - 23164634
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||||  || |||||||| ||||||||||||||| ||||||    
T  23164573 ttgttgtgattctttcaatgaaatagacttccaaattgattgattaagtgattatacaaatt 23164634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 27303501 - 27303436
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaa 356  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  27303501 cagggccgttccaatgaaataggaggctcggttctatttttaaaataggttctagtaaaataaaaa 27303436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 7767375 - 7767287
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||  | || || || |||||||| || ||| ||||||| ||||||||    
T  7767375 ccgttcctatgaaataggaggctcggttctatttttaaaataggcccaagtaagataaaaacgcatttttttgtgtgtagctaagcttc 7767287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 21596398 - 21596336
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||  |||||||||| ||| ||||| |||||||||||||||||| |||||||    
T  21596398 ttgttgtgattcttgtaatgaaatagctttccaaatcgactgattaagtgattatacaaattg 21596336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 24252683 - 24252622
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||| || |||||||  ||| |||||||||||||||||||||||| ||||||    
T  24252683 ttgttgtgattcttgcactgaaataactttccaaattgactgattaagtgattatacaaatt 24252622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 548 - 601
Target Start/End: Complemental strand, 54430607 - 54430554
Alignment:
Q  548 attctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||| |||||||||  |||||||||||||||||||||||||||| ||||||    
T  54430607 attcttttaatgaaataacttttcaaattgactgattaagtgattatacaaatt 54430554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 551 - 602
Target Start/End: Original strand, 1649843 - 1649894
Alignment:
Q  551 ctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||| |||||||| |||||||||||| ||||||||||||||| |||||||    
T  1649843 ctttcagtgaaatagattttcaaattgaatgattaagtgattatacaaattg 1649894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 543 - 602
Target Start/End: Original strand, 19965884 - 19965943
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||| |||||||||| ||||||| || ||| ||||||||||||| |||||||    
T  19965884 ttgtgattcttttaatgaaatagcttttcaatttaactaattaagtgattatacaaattg 19965943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 42009039 - 42009126
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| |||||||||| ||||||||||||||||||||||||| | |  || ||||| ||||  ||| | ||| ||||||||||||||||    
T  42009039 cgttcctatgaaatatgaggttcggttctatttttaaaataagcttcagtaaaataaaaatacaaatttttttgtgtagttaagcttc 42009126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 51147252 - 51147205
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaatag 338  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  51147252 cagggccgttcctatgaaataggaggctcggttctatttttaaaatag 51147205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 23067730 - 23067787
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||| |||||||||  ||||||||||||||| | |||||||||| ||||||    
T  23067730 tgtgattctttaaatgaaataacttttcaaattgactggtgaagtgattatacaaatt 23067787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 540 - 600
Target Start/End: Complemental strand, 20762112 - 20762052
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaat 600  Q
    ||||| ||||||||||||||||||||  || |||||| |||||| |||||||||| |||||    
T  20762112 ttgttatgattctttcaatgaaatagacttccaaattaactgatcaagtgattatacaaat 20762052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 15987321 - 15987276
Alignment:
Q  484 tgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    |||||||||| ||| || |||||||| |||||||||||||||||||    
T  15987321 tgtcactcctccgttgtgggaaagggaaaaacgaatggtttatgcg 15987276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 27729770 - 27729831
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||| || |||| | ||| |||||||| |||||| |||||||| ||||||    
T  27729770 ttgttgtgattctttcgatcaaattgctttccaaattgattgattatgtgattatacaaatt 27729831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 603
Target Start/End: Original strand, 43905862 - 43905907
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    |||||||  |||||||||||||||||| ||||||||| ||||||||    
T  43905862 tgaaataacttttcaaattgactgattgagtgattatacaaattga 43905907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 48626779 - 48626827
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaatagg 339  Q
    |||||||||  ||||||||||||||| |||||||| | |||||||||||    
T  48626779 caggaccgtccctatgaaataggaggctcggttctctatttaaaatagg 48626827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 449 - 603
Target Start/End: Complemental strand, 13997469 - 13997314
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||  ||   |||||||||||||||| ||||||||||||||||| |||||||||||||||||||            |||||||    
T  13997469 gagatgtgaaatttacctaaatgtgttgtttggaatgtcactcatacgtcgtaggaaaggg-aaaacgaatggtttatgcgaaaaagaaataattgttgt 13997371  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  13997370 gattctttcaatgaaatagtttttcaaattgactcattaagtgattattcaaattga 13997314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 29480545 - 29480703
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||| |||||||||||||  |||||||||||||||||||| |||||| |||||||||| || |||||||||||||            |||||||    
T  29480545 gagaggtgaactttacctaacggtgtcgtttggaatgtcactcctatgtcgtaagaaaggggaagacaaatggtttatgcgaaaaagaaataattgttgt 29480644  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  29480645 gattctttcaatgaaataatttttcaaattgactgaataagtgtttattcaaattgatg 29480703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 449 - 605
Target Start/End: Complemental strand, 1419065 - 1418907
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |||||| |||||||||  |||| |||| |||||||||            |||||||    
T  1419065 gagaagtgaaatttacctaacggtgtcatttggaatgtcactcatacgtcataggaaaggaaaaaatgaatagtttatgcgaaaaagaaataattgttgt 1418966  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||    
T  1418965 gattctttcaatgaaatagctttacaaattgactgattaagtgattatacaaattgatg 1418907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 455 - 604
Target Start/End: Complemental strand, 38599551 - 38599401
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-ttgttgtgattctt 553  Q
    ||||||||||||||||||  |||||| |||| ||||| |||||||| ||||||||||||||||||||||||||             ||||| ||||||||    
T  38599551 tgaaatttacctaacggtgtcgtttgaaatgccactcatacgtcgtgggaaaggggaaaacgaatggtttatgaaaaaataaataattgttttgattctt 38599452  T
Q  554 tcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgat 604  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  38599451 tcaatgaaatagtttttcaaattgattgattaagtgattatacaaattgat 38599401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 477 - 605
Target Start/End: Complemental strand, 39081525 - 39081396
Alignment:
Q  477 tttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-ttgttgtgattctttcaatgaaatagtttttcaaat 575  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  |           ||||||| |||||||||||||||||| |||||||||    
T  39081525 tttggaatgtcactcctacgtcgtaggaaaggggaaaactaatggtttatatgaaaagaaataattgttgtaattctttcaatgaaatagcttttcaaat 39081426  T
Q  576 tgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| ||||||||||    
T  39081425 tgactgattaagtgattatacaaattgatg 39081396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 13997633 - 13997534
Alignment:
Q  285 catcagcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||| ||||||| ||||||||    
T  13997633 catctgcaggaccgttcctatgaaataggaggctcggttctatttttaaaataggccacagtaaaatcaaaacgcaattctttttgtgtagctaagcttc 13997534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 457 - 605
Target Start/End: Original strand, 36059821 - 36059971
Alignment:
Q  457 aaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattcttt 554  Q
    |||||||| ||||||   ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||             |||||||| ||||||    
T  36059821 aaatttacgtaacggcgtcgtttggaatgtcactcatacgtcgtgggaaaagggaaaacgaatggtttatgcaaaaaagaaatgattgttgtggttcttt 36059920  T
Q  555 caatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||    
T  36059921 caatgaaatagctttttaaattaactgattaagtgattatacaaattgatg 36059971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 19367420 - 19367481
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  19367420 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 19367481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 41096539 - 41096600
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  41096539 ttgttgtgattctttcaatgaaatagttttccaaattgactgattaagtgattatacaaatt 41096600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 15457563 - 15457501
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  15457563 ttgttgtgattctttcaataaaatagcttttcaaattgactgattaagtgattatacaaattg 15457501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 454 - 601
Target Start/End: Original strand, 26151658 - 26151809
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    |||||||||| ||||||||  |||||||| | |||||||||  || |||| |||||| |||||||||||||||||||          |   |||||||||    
T  26151658 gtgaaatttatctaacggtgtcgtttggatttgtcactcctctgttgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgat 26151757  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  26151758 tctttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 26151809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 2063868 - 2063807
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  2063868 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 2063807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 6530722 - 6530661
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  6530722 ttgttgtgattctttcaatgaaataccttttcaaattgactgattaagtgattatacaaatt 6530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 527
Target Start/End: Complemental strand, 38599665 - 38599593
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatg 527  Q
    ||||||||||||||||||  |||||| |||| ||||| |||||||| ||||||||||||||||||||||||||    
T  38599665 tgaaatttacctaacggtgtcgtttgaaatgccactcatacgtcgtgggaaaggggaaaacgaatggtttatg 38599593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 39081704 - 39081617
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | || ||||| |||||  |||| ||| ||||||||||||||||    
T  39081704 ccgttcctatgaaataggaggttcggttctatttttaaaataggtcccagtaaaataaaaacataatt-tttttgtgtagttaagcttc 39081617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 21747231 - 21747293
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||    
T  21747231 ttgttgtgattctttcaatgacatagtattttaaattgactgattaagtgattatacaaattg 21747293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 38985710 - 38985772
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||    
T  38985710 ttgttgtgattctttcaatgaaatagcttttcaaattgattgattaaatgattatacaaattg 38985772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 4856056 - 4855995
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  4856056 ttgttgtgattctttcaatgaaatagctttccaaattcactgattaagtgattatacaaatt 4855995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 7993695 - 7993634
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||    
T  7993695 ttgttgtgattctttcaatgaaatagctttccaaattggctgattaagtgattatacaaatt 7993634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 13020486 - 13020425
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||    
T  13020486 ttgttgtgattctttaaatgaaatagctttccaaattgactgattaagtgattatacaaatt 13020425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 18172941 - 18173002
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||    
T  18172941 ttgttgtgattctttcgatgaaatagcttttcaaattgagtgattaagtgattatacaaatt 18173002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 18676312 - 18676373
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||    
T  18676312 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagttattatacaaatt 18676373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 603
Target Start/End: Original strand, 27302529 - 27302592
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    ||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||| ||||||||    
T  27302529 ttgttgtgattcttttaatgatatagcttttcaaattgaccgattaagtgattatacaaattga 27302592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 544 - 602
Target Start/End: Original strand, 18916059 - 18916117
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||    
T  18916059 tgtgattctttcagtgaaatagcttttcaaattgattgattaagtgattatacaaattg 18916117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 17117646 - 17117691
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgatta 585  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  17117646 ttgttgtgattctttcaatgaaatagcttttcaaattgactgatta 17117691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 34061857 - 34061918
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| || || ||||||    
T  34061857 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtaatcatacaaatt 34061918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 42411559 - 42411620
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| |||||||||| ||| |||||||||| ||||||||||||| ||||||    
T  42411559 ttgttgtgattctttaaatgaaatagctttccaaattgactaattaagtgattatacaaatt 42411620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 45619039 - 45618979
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||||||||||| ||||||    
T  45619039 ttgttgtgattctttcaatgaaatagcttc-caaattgactgattaagtgattatacaaatt 45618979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 45042455 - 45042391
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttca---aattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||||  |||||   |||||||||||||||||||||| ||||||    
T  45042455 ttgttgtgattctttcaatgaaatagactttcaccaaattgactgattaagtgattatacaaatt 45042391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 25222386 - 25222325
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  |||  ||||||||| ||||||||||||| ||||||    
T  25222386 ttgttgtgattctttcaatgaaataactttctaaattgactaattaagtgattatacaaatt 25222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 602
Target Start/End: Original strand, 31273168 - 31273229
Alignment:
Q  541 tgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||| ||||||||| ||||||||||| || |||||||||||||||| ||||||| |||||||    
T  31273168 tgttatgattcttttaatgaaatagtattccaaattgactgattaaatgattatacaaattg 31273229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 1419207 - 1419172
Alignment:
Q  307 aaataggaggttcggttctatttttaaaataggttc 342  Q
    ||||||||||||||||||||||||||||||||||||    
T  1419207 aaataggaggttcggttctatttttaaaataggttc 1419172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 29480386 - 29480469
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgta 374  Q
    |||| ||||| |||||||||| |||| | ||||||||||||||||||||  |  | |||||||||| |||||||||| ||||||    
T  29480386 caggcccgttcctatgaaatatgaggcttggttctatttttaaaataggcccccgtaaaatcaaaatgcaattctttttgtgta 29480469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 42759757 - 42759802
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgatta 585  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||    
T  42759757 ttgttgtgattctttcaatgaaataactttccaaattgactgatta 42759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 36059660 - 36059748
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||| |||  ||| |||||||||||||| | || ||||| ||||||||||| ||| | ||||| ||| ||||    
T  36059660 ccgttgctatgaaataggaggctcgactctttttttaaaataggtaccagtaaaataaaaacgcaattttttttttgtagctaaacttc 36059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 449 - 601
Target Start/End: Original strand, 3628655 - 3628809
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||||||||||||||||            |||||||    
T  3628655 gagaggtgaaatttacctaactgtgtcgtttggaatgtcactcctacgtcgtaggaaacggaaaaacgaatggtttatgcgaaaaagaaataattgttgt 3628754  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||| ||||||    
T  3628755 gattctttcaatgaaataacttttcaaattgactgattatgtgattatacaaatt 3628809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 455 - 585
Target Start/End: Original strand, 36515069 - 36515202
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgc---ggnnnnnnnnnttgttgtgattc 551  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||| |||| |||||||   |          ||||||||||||    
T  36515069 tgaaatttatctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaatgggaaaacaaatgatttatgcgaagaaaaaaataattgttgtgattc 36515168  T
Q  552 tttcaatgaaatagtttttcaaattgactgatta 585  Q
    ||||||||||||||||||| ||||| ||||||||    
T  36515169 tttcaatgaaatagttttttaaattaactgatta 36515202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 34523952 - 34524014
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  34523952 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattg 34524014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 3471663 - 3471602
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  3471663 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 3471602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 449 - 601
Target Start/End: Original strand, 32098085 - 32098240
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttg 545  Q
    |||||||||||||||| |||||||  |||||||| | |||||||||  || || |||| ||||||||||||||||||||||             ||||||    
T  32098085 gagaagtgaaatttacgtaacggtgtcgtttggattcgtcactcctctgttgtgggaatggggaaaacgaatggtttatgcaaaaaagaaataattgttg 32098184  T
Q  546 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| || ||||||    
T  32098185 tgattctttcaatgaaatagttttccaaattgactgattaagtgatcatacaaatt 32098240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 454 - 607
Target Start/End: Complemental strand, 42076260 - 42076104
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcgg----nnnnnnnnnttgttgtgat 549  Q
    |||||||||||||||||||  | ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||             || || ||||    
T  42076260 gtgaaatttacctaacggtgtcatttggaatgtcactcctac-tcgtagaaaaggggaaaacgaatagtttatgcggaaaaaaataattattattatgat 42076162  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatgat 607  Q
    ||||||||||  |||| |||||||||||| ||||||||| ||||| ||||||||||||    
T  42076161 tctttcaatgttatagcttttcaaattgattgattaagttattatacaaattgatgat 42076104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 12531622 - 12531560
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  12531622 ttgttgtgattctttcaatgaaatagatttttaaattgactgattaagtgattatacaaattg 12531560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 23567275 - 23567337
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  23567275 ttgttgtgatactttcaatgaaatagtatttcaaattgactgattaagtgattatacaaattg 23567337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 18112179 - 18112118
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  18112179 ttgttgtgattctttcaataaaatagttttccaaattgactgattaagtgattatacaaatt 18112118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 18420610 - 18420671
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||    
T  18420610 ttgttgtgattctttcaatgaaacagcttttcaaattgactgattaagtgattatacaaatt 18420671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 43926324 - 43926385
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  43926324 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtaattatacaaatt 43926385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 5869323 - 5869375
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgatt 592  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5869323 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgatt 5869375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 1004122 - 1004060
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagttttt-caaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  1004122 ttgttgtgattctttcaatgaaataattttttcaaattgactgattaagtgattatacaaatt 1004060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 13585362 - 13585301
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  13585362 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaattgattatacaaatt 13585301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 43968071 - 43968132
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||||    
T  43968071 ttgttgtgattctttcaatgaaataacttttcaaattgattgattaagtgattatacaaatt 43968132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 604
Target Start/End: Complemental strand, 35874989 - 35874925
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgat 604  Q
    |||||||| ||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||    
T  35874989 ttgttgtggttctttctaagaaatagtttttcaaattgaccgattaagtgattatacaaattgat 35874925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 39697939 - 39698001
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| |||| || |||||||    
T  39697939 ttgttgtgattctttcaatgaaatagcttttcaaattgactaattaaatgatcatacaaattg 39698001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 27074637 - 27074576
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||| ||||||    
T  27074637 ttgttgtgattttttcaatgaaatagacttttaaattgactgattaagtgattatacaaatt 27074576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 35875216 - 35875147
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgc 359  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||  || || ||||| |||||||    
T  35875216 gcagggccgttactatgaaataggaggttcggttctatttttaaaatagactcgagtaaaataaaaacgc 35875147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 42951774 - 42951831
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||||    
T  42951774 tgtgattctttcaataaaataacttttcaaattgactgattaagtgattatacaaatt 42951831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 602
Target Start/End: Complemental strand, 29372508 - 29372358
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgattc 551  Q
    ||||||||||||||| |||  |||||||| |||||||||| | |||| | ||||||||||| ||||||||||||||            ||||||| ||||    
T  29372508 gtgaaatttacctaatggtgtcgtttggattgtcactccttcatcgtggcaaaggggaaaatgaatggtttatgcgaaaaataaatgattgttgtcattc 29372409  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||  ||||  ||| |||||||||||||||| ||||||| |||||||    
T  29372408 tttcaattgaataactttccaaattgactgattaaatgattatacaaattg 29372358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 30915288 - 30915343
Alignment:
Q  540 ttgttgtgattctttc-aatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  30915288 ttgttgtgattctttttaatgaaatagcttttcaaattgactgattaagtgattat 30915343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 42076408 - 42076330
Alignment:
Q  305 tgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||||| |||||||||||||||| ||||||||||  | | | |||||||||||||||||||| ||||||| ||||||||    
T  42076408 tgaaataagaggttcggttctattgttaaaataggcccca-gtaaatcaaaacgcaattctttttgtgtagataagcttc 42076330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 7858148 - 7858087
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| |||||| ||  ||| |||||||||||||||||||||||| ||||||    
T  7858148 ttgttgtgattctttaaatgaattaactttccaaattgactgattaagtgattatacaaatt 7858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 44665047 - 44665108
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  ||| ||||| ||||||||||||||| || ||||||    
T  44665047 ttgttgtgattctttcaatgaaataactttccaaatagactgattaagtgatgatacaaatt 44665108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 33453064 - 33453021
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaatagg 339  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||    
T  33453064 ccgttcctatgaaataggaggttcagttctctttttaaaatagg 33453021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 18112424 - 18112378
Alignment:
Q  305 tgaaataggaggttcggttctatttttaaaataggttctaggaaaat 351  Q
    ||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  18112424 tgaaataggaggttcggctctctttttaaaataggtcctagtaaaat 18112378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 36514905 - 36514978
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattct 365  Q
    |||| ||||| ||||||||||||||||| |||| |||||||||| |||  |  || |||||||||||||||||||    
T  36514905 cagggccgttcctatgaaataggaggtttggtt-tatttttaaattagacttcagtaaaatcaaaacgcaattct 36514978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 5e-33; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 3748476 - 3748634
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||||||  | ||||||||||||||||||||||| | ||||||||||||||||| ||||||| |            |||||||    
T  3748476 gagatgtgaaatttacctaacggtgtcatttggaatgtcactcctacgtcgcatgaaaggggaaaacgaatagtttatgtgacaaagaaataattgttgt 3748575  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  3748576 gattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattgatg 3748634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 578
Target Start/End: Complemental strand, 6294410 - 6294279
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||| |||||||||            |||||||    
T  6294410 gagaggtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtgggaaaggggaaaacgaatagtttatgcgaaaaagaaatgattgttgt 6294311  T
Q  547 gattctttcaatgaaatagtttttcaaattga 578  Q
    ||||||||||||||||| | ||||||||||||    
T  6294310 gattctttcaatgaaattgcttttcaaattga 6294279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 628096 - 628157
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  628096 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 628157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 2618418 - 2618357
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  2618418 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 2618357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 12614717 - 12614778
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  12614717 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 12614778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 457 - 605
Target Start/End: Original strand, 30915277 - 30915432
Alignment:
Q  457 aaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-------ttgttgtgat 549  Q
    |||||||| |||||||  |||||| ||||||||| |||||||||| ||||||||| || ||||||||||||||                 ||||||||||    
T  30915277 aaatttacataacggtgtcgtttgaaatgtcacttctacgtcgtaagaaaggggataatgaatggtttatgcgaaaaattaaagaaatgattgttgtgat 30915376  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||    
T  30915377 tctttcaattaaatagcttttcaaattgactgattaagtaattatacaaattgatg 30915432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 31861064 - 31861002
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  31861064 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtaattatacaaattg 31861002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 449 - 601
Target Start/End: Complemental strand, 21946261 - 21946109
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||| |||||||||||||||  |||||| |||||||||| ||||| ||||||||| ||||||||||| |||||||||            ||||| |    
T  21946261 gagaggtggaatttacctaacggtgtcgtttg-aatgtcactcttacgt-gtaggaaagaggaaaacgaattgtttatgcgaaaaagaaataattgttat 21946164  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    | ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  21946163 ggttctttcaatgaaatagcttttcaaatagactgattaagtgattatacaaatt 21946109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 29401203 - 29401149
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29401203 ttgttgtgattctttcaatgaaataacttttcaaattgactgattaagtgattat 29401149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 6754269 - 6754208
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||    
T  6754269 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgactatacaaatt 6754208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 14893418 - 14893479
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||| ||||||    
T  14893418 ttgttgtgattcttttaacgaaatagtttttcaaattgactgattaagtaattatacaaatt 14893479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 1690634 - 1690696
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||||||||||  |||||||||||| |||| |||||||||| |||||||    
T  1690634 ttgttgtgattctttcaatgaaataaattttcaaattgattgatcaagtgattatacaaattg 1690696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 548 - 594
Target Start/End: Complemental strand, 22503798 - 22503752
Alignment:
Q  548 attctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  22503798 attctttcaacgaaatagtttttcaaattgactgattaagtgattat 22503752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 454 - 601
Target Start/End: Complemental strand, 29149556 - 29149405
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    ||||||||||| |||||||| |||||||| | |||||||||  || || | |||||| |||||||||||||||||||          |   |||||||||    
T  29149556 gtgaaatttacgtaacggtatcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgat 29149457  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||| ||  ||| |||||||||||||||||||||||| ||||||    
T  29149456 tctttcaatgaactaactttccaaattgactgattaagtgattatacaaatt 29149405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 29308468 - 29308522
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| |||||    
T  29308468 ttgttgtgattacttcaatgaaatagtttttcaaattgactgattaagtcattat 29308522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 57751 - 57690
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||||||||||| ||||||    
T  57751 ttgttgtgattctttgaatgaaatagctttctaaattgactgattaagtgattatacaaatt 57690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 6360822 - 6360762
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||    
T  6360822 ttgttgtgattctttcaatgaa-taacttttcaaattgactgattaagtgattatacaaatt 6360762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 7525167 - 7525228
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||| |||||  ||| |||||||||||||||||||||||| ||||||    
T  7525167 ttgttgtgattctttcaataaaataactttccaaattgactgattaagtgattatacaaatt 7525228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 3514851 - 3514912
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||| |||| ||| |||||||| |||||| |||||||| ||||||    
T  3514851 ttgttgtgattctttcaatgatatagctttccaaattgaatgattacgtgattatacaaatt 3514912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 3748329 - 3748411
Alignment:
Q  303 tatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgca-attctttctgtgtagttaagcttc 384  Q
    |||||||||||||| ||||||||||||||||||||||| | || ||||| |||| |||  || ||| ||||||| ||||||||    
T  3748329 tatgaaataggaggctcggttctatttttaaaataggtccgagtaaaataaaaatgcattttttttgtgtgtagctaagcttc 3748411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 31234956 - 31234912
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||    
T  31234956 tgaaatagcttttcaaattgattgattaagtgattatacaaattg 31234912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 591
Target Start/End: Complemental strand, 19231675 - 19231624
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgat 591  Q
    ||||||||||| ||||||||  |||| |||||||||||| ||||||||||||    
T  19231675 ttgttgtgattttttcaatgtcatagcttttcaaattgattgattaagtgat 19231624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 1093042 - 1093095
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||| ||| |||||    
T  1093042 ttgttgtgattctttca-tgaaatagctttttaaattgactgatttagtcattat 1093095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 1327638 - 1327594
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||  ||||||| ||||||||||||||| |||||||    
T  1327638 tgaaatagttttctaaattgattgattaagtgattatacaaattg 1327594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 22504047 - 22504011
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaatag 338  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  22504047 ctatgaaataggaggctcggttctctttttaaaatag 22504011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 449 - 605
Target Start/End: Original strand, 35653888 - 35654046
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||| ||||||||  | |||| |||||||||||||||||||||||||||| ||||||||| |||||||||            |||||||    
T  35653888 gagaggtgaaatttatctaacggtgtcatttgaaatgtcactcctacgtcgtaggaaagggaaaaacgaatagtttatgcgaaaaagaaataattgttgt 35653987  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  35653988 gattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattgatg 35654046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 32130791 - 32130852
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32130791 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattatacaaatt 32130852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 454 - 605
Target Start/End: Complemental strand, 22423837 - 22423682
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn----ttgttgtgat 549  Q
    |||||||||| ||||||||  |||||||||||||||||||| |||||| |||| || |||||||||| |||||| ||             ||||| ||||    
T  22423837 gtgaaatttatctaacggtgtcgtttggaatgtcactcctatgtcgtatgaaatggaaaaacgaatgatttatgtggaaaaaataaataattgttttgat 22423738  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||    
T  22423737 tctttcaataaaatagtttttcaaattgattgattaagtgatcatacaaattgatg 22423682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 41038313 - 41038252
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  41038313 ttgttgtgattctttcaatgaaatagttttccaaattgactgattaagtgattatacaaatt 41038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 603
Target Start/End: Original strand, 21791456 - 21791611
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||||||||||||||  |  |||||||| |||||||| | |||||| |||||||||||| | |||||||||||||            |||||||    
T  21791456 gagaggtgaaatttacctaacaatgtcgtttggattgtcactcattcgtcgtgggaaaggggaaa-caaatggtttatgcgaaaaagaaatgattgttgt 21791554  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| || |||||    
T  21791555 gattctttcaatgaaataacttttcaaattgactgattaagtgattatacacattga 21791611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 540 - 602
Target Start/End: Complemental strand, 34982287 - 34982225
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||    
T  34982287 ttgttgtgattctttcaacgaaatagtttttccaattgactgattaagtgattatacaaattg 34982225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 23426167 - 23426228
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  23426167 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 23426228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 45172646 - 45172707
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||    
T  45172646 ttgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattatacaaatt 45172707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 603
Target Start/End: Original strand, 10575437 - 10575587
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgattct 552  Q
    |||||||||||| |||||  | || ||| |||||||||| |||||| ||||||||||||||||||||||||||||            ||||||||||| |    
T  10575437 tgaaatttacctgacggtgtcattcggattgtcactcctccgtcgtgggaaaggggaaaacgaatggtttatgcgaaaaagaaatgattgttgtgattat 10575536  T
Q  553 ttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattga 603  Q
    ||||||||||||  |||  ||||||||||||||||||||||| ||| ||||    
T  10575537 ttcaatgaaataactttctaaattgactgattaagtgattatacaagttga 10575587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 602
Target Start/End: Complemental strand, 5545481 - 5545330
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgatt 550  Q
    |||||||||||||||||||  |||||| | | ||||||||| ||| ||  ||| |||||||||||||||||||||||            |||||||||||    
T  5545481 gtgaaatttacctaacggtgtcgtttgaatttgtcactcctccgttgtgagaagggggaaaacgaatggtttatgcgaaaaataaatgattgttgtgatt 5545382  T
Q  551 ctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||| |||||||||| ||| ||||||||| |||||||||||||| |||||||    
T  5545381 cttttaatgaaatagctttccaaattgaccgattaagtgattatacaaattg 5545330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 19661442 - 19661381
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  19661442 ttgttgtgtttctttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 19661381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 605
Target Start/End: Original strand, 43154789 - 43154854
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg 605  Q
    ||||||||||||||| |||||||||  |||| ||||||||||||||||||||||| ||||||||||    
T  43154789 ttgttgtgattcttttaatgaaataactttttaaattgactgattaagtgattatacaaattgatg 43154854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 44478102 - 44478041
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||    
T  44478102 ttgttgtgattctttcaatgaaatagctttccaaattgactgatttagtgattatacaaatt 44478041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 53011775 - 53011714
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||    
T  53011775 ttgttgtgattcttttaatgaaatagctttccaaattgactgattaagtgattatacaaatt 53011714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 540 - 604
Target Start/End: Complemental strand, 24449189 - 24449125
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgat 604  Q
    |||||||| ||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||    
T  24449189 ttgttgtggttctttctaagaaatagtttttcaaattgaccgattaagtgattatacaaattgat 24449125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 11681743 - 11681797
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  11681743 ttgttgtgattctttcaatgaaataactttccaaattgactgattaagtgattat 11681797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 11690022 - 11690076
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||    
T  11690022 ttgttgtgattctttcaatgaaataactttccaaattgactgattaagtgattat 11690076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 55134271 - 55134217
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||    
T  55134271 ttgttgtgattctttctatgaaatagcttttcaaattgactgattaagtcattat 55134217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 24449416 - 24449347
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgc 359  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||  || || ||||| |||||||    
T  24449416 gcagggccgttactatgaaataggaggttcggttctatttttaaaatagactcgagtaaaataaaaacgc 24449347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 601
Target Start/End: Complemental strand, 27632457 - 27632400
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||    
T  27632457 tgtgattctttcaatgaagtagcttttcaaattgactaattaagtgattatacaaatt 27632400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 28463589 - 28463650
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| ||||||    
T  28463589 ttgttgtgattttttcaatgaaatagcttttcaacttgattgattaagtgattatacaaatt 28463650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 549 - 601
Target Start/End: Complemental strand, 16072648 - 16072596
Alignment:
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||    
T  16072648 ttctttcattgaaatagtttttcaaattgactgattaaatgattatacaaatt 16072596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 23256657 - 23256596
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||| |||||||| |||  |||||||||||||||||| |||| ||||||    
T  23256657 ttgttgtgattctttcattgaaatagctttctaaattgactgattaagtggttatacaaatt 23256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 29579943 - 29579882
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||| | ||||| ||||||    
T  29579943 ttgttgtgattctttcattgaaatagcttttcaatttgactgattaattaattatacaaatt 29579882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 35653735 - 35653823
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||| ||| |||||||||||||||| |||||  | || ||||| ||||| || || ||| ||||||||||||||||    
T  35653735 ccgttcctatgaaatagaaggctcggttctatttttaagataggcccgagtaaaataaaaacacatttttttgtgtgtagttaagcttc 35653823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 29221622 - 29221683
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||| |||||||||||||  || ||||||||| | |||||||||||| ||||||    
T  29221622 ttgttgtgattccttcaatgaaatagacttccaaattgaccgtttaagtgattatacaaatt 29221683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 22423976 - 22423938
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaataggt 340  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  22423976 ctatgaaataggagtctcggttctatttttaaaataggt 22423938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 379
Target Start/End: Complemental strand, 23256911 - 23256825
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaa 379  Q
    |||||| ||| || |||||||||||| |||| ||| |||||||||||||  |||| ||||| |||||| |||| ||| |||||||||||    
T  23256911 caggactgttcctgtgaaataggaggctcggctctctttttaaaataggccctagtaaaat-aaaacgtaatt-tttttgtgtagttaa 23256825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 41038403 - 41038327
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    |||||||||| ||||||||  |||||||| | |||||||||  || || | |||||| |||||||||||||||||||    
T  41038403 gtgaaatttatctaacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcg 41038327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 542 - 601
Target Start/End: Complemental strand, 16771 - 16712
Alignment:
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  16771 gttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 16712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 17133 - 17194
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||    
T  17133 ttgttgtgattctttcaacgaaatagctttccaaattgactgattaagtgattatacaaatt 17194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 601
Target Start/End: Original strand, 8399 - 8457
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||    
T  8399 ttgtgattctttcaatgaaatagttttcgaaattgactgattaattgattatacaaatt 8457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 46174 - 46235
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||| ||||||||||||||  || |||||||||||||||||||||||| ||||||    
T  46174 ttgttgtgattatttcaatgaaatagacttccaaattgactgattaagtgattatccaaatt 46235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 1214 - 1138
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    |||||||||| ||||||||  |||||||| | |||||||||| || || | |||||| |||||||||||||||||||    
T  1214 gtgaaatttatctaacggtgtcgtttggatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcg 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 540 - 578
Target Start/End: Complemental strand, 1124 - 1086
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattga 578  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  1124 ttgttgtgattctttcaatgaaatagctttccaaattga 1086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 578
Target Start/End: Original strand, 22809 - 22844
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattga 578  Q
    |||||||||||||||||||||||||||||| |||||    
T  22809 ttgtgattctttcaatgaaatagtttttcatattga 22844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 22716 - 22792
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    |||||||||| ||||||||  |||||| | | |||||||||| || || | |||||| |||||||||||||||||||    
T  22716 gtgaaatttatctaacggtgtcgtttgaatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcg 22792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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