View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_high_5 (Length: 613)
Name: NF18013_high_5
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 565
Target Start/End: Complemental strand, 24947154 - 24946600
Alignment:
| Q |
17 |
aatcttcagatagaaaaggataatctgtttgattaactatatttgcattggagcagtaaagtgtcgcttgaaattttgtcatgttcgagggtactagttc |
116 |
Q |
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| T |
24947154 |
aatcttcagatagagaaggataatctgttagattaactatatttgcattggagtagtaaagtgtcacttgaaattttgtcatgtttgagtgtactagttc |
24947055 |
T |
|
| Q |
117 |
ataattgcagcgatgtgattatagtgttctttttgttcagatcaaataatggtgtttctaagaaagatgtttccttgcgcagatgattttgttcattcaa |
216 |
Q |
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| T |
24947054 |
ataattgcagcgatgtgattatagtgttctttttgttcagatcaaataatggtgtttctaagaaagatgtttccttgcacagatgattttgttcattcaa |
24946955 |
T |
|
| Q |
217 |
taatgatataggttta---cttcctggggaagtttgtaatttgtgcaaactgggcatgtcaataaagataagaatcagaaaccaaaatgtacaaaattta |
313 |
Q |
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|||||||||||||||| ||||||| || || |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24946954 |
taatgatataggtttacttcttcctgaggtagattgtaattagtacaaacagggcatgtcaataaagataagaatcagaaaccaaaatgtacaaaattta |
24946855 |
T |
|
| Q |
314 |
agatgtcatgtttgaaaga--ttttttcgaatagactatattaaaacacttgatagttatcgacctttggtcttttttcctaatttgacttttcatccat |
411 |
Q |
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||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
24946854 |
agatgtcatgtttgaaagattttttttcaaatagactatattaaaacacttgttagtaatcgacctttggtcttttttcctaatttgacttttcattcat |
24946755 |
T |
|
| Q |
412 |
attcgaatgaccctattcccatcagaacttttttc-aaaccctggtttctgtctttgtcagtgtattcaaaattcattaatcgtgaatttcttggactac |
510 |
Q |
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||| ||||| |||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24946754 |
atttgaatggccctattcccatcataacttgtttcaaaaccctggtttctgtctctgtcagtgtattcaaaattcattaatcgtgaatttcttggactac |
24946655 |
T |
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| Q |
511 |
agtcttttcagtggttatctgaatatgaattggaattgaatgttctgatttgaaa |
565 |
Q |
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|||||||||||||||||||||||||| ||| ||||||| |||| ||||||||||| |
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| T |
24946654 |
agtcttttcagtggttatctgaatattaatcggaattggatgtcctgatttgaaa |
24946600 |
T |
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