View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18013_high_7 (Length: 560)
Name: NF18013_high_7
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_high_7 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 560
Target Start/End: Original strand, 3922311 - 3922870
Alignment:
| Q |
1 |
tccattcctaccaatgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaatcaagttcttcttctaaatcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3922311 |
tccattcctaccaatgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaaacaagttcttcttctaaatcatca |
3922410 |
T |
|
| Q |
101 |
taatttgttgtatcagcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagataga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922411 |
taatttgttgtatcagcaccagataatgttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagataga |
3922510 |
T |
|
| Q |
201 |
aactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgcttcaattggattcttccattgccttatgtc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922511 |
aactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgcttcaattggattcttccattgccttatgtc |
3922610 |
T |
|
| Q |
301 |
ctctaaccatttccnnnnnnnnnnnnngtaactaataagactcatgatcctgttatagtttgctattccttttctcatactccacatatctgatctcata |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922611 |
ctctaaccatttccaaaaagcaaaaaagtaactaataagactcatgatcctgttatagtttgctattccttttctcatactccacatatctgatctcata |
3922710 |
T |
|
| Q |
401 |
tcaagcatataagacacaacttcttccctaagtgctggttccgcctcgcttaaactcactgatataatacgaaaagcttgatttcttaaagtatcaaact |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3922711 |
tcaagcatataagacacaacttcttccctaagtgccggttccgcctcgcttaaactcactgatataatgcgaaaagcttgatttcttaaagtatcaaact |
3922810 |
T |
|
| Q |
501 |
gtgtaggcgacaatggtaagaagtagtgtactgcaggaaacaaaggtctgccgtataatg |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3922811 |
gtgtaggcgacaatggtaagaagtagtgtactgcaggaaacaaaggtctgccgtataatg |
3922870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 3 - 274
Target Start/End: Complemental strand, 34958333 - 34958057
Alignment:
| Q |
3 |
cattcctaccaatgactctcaacctatcatacctccttctcaaatgttcacctccaatttgagttggaaagaaatcaagttcttcttctaaatcatcata |
102 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34958333 |
cattcctgccaatgactctcaacctatcatacctccttctcaaatcttcacctccagtttgagttggaaagaaatcaagttcttcttctaaatcatcaga |
34958234 |
T |
|
| Q |
103 |
atttgttgtatcagcaccagataat-----gttgcatctatgtgacaaggatgctcatgcttcttgaaattataattatccaaaccaatcttgaaaagat |
197 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34958233 |
atttgttgtatcagcaccagataatataatgttgcatctatgtgacaaggatgctcatgctttttgaaattataattatccaaaccaatcttgaaaagat |
34958134 |
T |
|
| Q |
198 |
agaaactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgcttca |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34958133 |
agaaactcaccaaaggtatcattggctctggatacaaaagcacacataagcaaaaaatatgaaaaagcactgtttca |
34958057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University