View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_low_1 (Length: 810)

Name: NF18013_low_1
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_low_1
NF18013_low_1
[»] chr5 (33 HSPs)
chr5 (454-670)||(17325777-17325996)
chr5 (478-672)||(138075-138270)
chr5 (449-660)||(10033489-10033702)
chr5 (540-673)||(16515454-16515587)
chr5 (454-640)||(18873416-18873611)
chr5 (540-661)||(20975927-20976048)
chr5 (540-673)||(42291882-42292015)
chr5 (540-673)||(43511548-43511681)
chr5 (540-673)||(3349730-3349862)
chr5 (540-665)||(4734583-4734708)
chr5 (540-673)||(10591274-10591407)
chr5 (540-671)||(40956245-40956376)
chr5 (540-673)||(5829315-5829446)
chr5 (548-670)||(27351282-27351404)
chr5 (540-673)||(13656137-13656273)
chr5 (298-375)||(17326075-17326152)
chr5 (540-673)||(17513937-17514070)
chr5 (540-673)||(29156120-29156253)
chr5 (540-665)||(40779130-40779254)
chr5 (449-599)||(7390309-7390460)
chr5 (540-601)||(19099315-19099376)
chr5 (540-661)||(26377775-26377896)
chr5 (296-384)||(16515726-16515814)
chr5 (540-673)||(13474559-13474693)
chr5 (540-601)||(12661311-12661372)
chr5 (540-601)||(13423866-13423927)
chr5 (542-661)||(36718570-36718689)
chr5 (296-384)||(7390156-7390244)
chr5 (572-629)||(931354-931411)
chr5 (547-600)||(33281677-33281730)
chr5 (294-384)||(8379197-8379286)
chr5 (297-338)||(931636-931677)
chr5 (291-383)||(3349479-3349571)
[»] chr1 (45 HSPs)
chr1 (454-673)||(17674267-17674487)
chr1 (449-666)||(22386744-22386964)
chr1 (454-673)||(24556736-24556957)
chr1 (459-668)||(42740045-42740256)
chr1 (449-673)||(37873665-37873897)
chr1 (449-658)||(44836633-44836840)
chr1 (449-613)||(13120774-13120940)
chr1 (543-663)||(38263804-38263924)
chr1 (449-673)||(27703437-27703663)
chr1 (454-673)||(26486286-26486499)
chr1 (540-673)||(12971336-12971469)
chr1 (540-657)||(50371080-50371197)
chr1 (540-674)||(15441219-15441354)
chr1 (540-661)||(10109662-10109783)
chr1 (540-673)||(5560413-5560546)
chr1 (540-673)||(12884138-12884272)
chr1 (540-661)||(6150663-6150784)
chr1 (540-616)||(33124631-33124707)
chr1 (297-384)||(24557023-24557110)
chr1 (540-673)||(50552424-50552558)
chr1 (540-601)||(18127938-18127999)
chr1 (540-661)||(30899598-30899719)
chr1 (611-791)||(13121749-13121925)
chr1 (540-673)||(25930532-25930667)
chr1 (540-673)||(1269489-1269614)
chr1 (297-384)||(17674110-17674197)
chr1 (290-384)||(37873505-37873599)
chr1 (540-661)||(17487284-17487405)
chr1 (540-601)||(48722371-48722432)
chr1 (540-673)||(20905288-20905423)
chr1 (582-665)||(31369432-31369515)
chr1 (454-601)||(9-160)
chr1 (543-661)||(14084705-14084823)
chr1 (540-661)||(29208099-29208220)
chr1 (540-602)||(30004908-30004970)
chr1 (290-384)||(42740326-42740420)
chr1 (540-594)||(51110102-51110156)
chr1 (540-594)||(52055561-52055615)
chr1 (546-602)||(3907472-3907528)
chr1 (159-198)||(25271713-25271752)
chr1 (540-601)||(28885672-28885733)
chr1 (558-601)||(32810370-32810413)
chr1 (540-629)||(9777387-9777477)
chr1 (302-380)||(22386597-22386675)
chr1 (291-384)||(26486125-26486218)
[»] chr7 (34 HSPs)
chr7 (449-672)||(7366618-7366843)
chr7 (449-673)||(26633293-26633519)
chr7 (454-673)||(36438264-36438485)
chr7 (449-669)||(40737908-40738121)
chr7 (478-674)||(18895334-18895532)
chr7 (540-675)||(9479055-9479190)
chr7 (540-673)||(26282543-26282676)
chr7 (454-673)||(32956704-32956927)
chr7 (540-673)||(40001697-40001830)
chr7 (540-673)||(33909993-33910127)
chr7 (540-673)||(1365939-1366072)
chr7 (541-670)||(42311943-42312071)
chr7 (540-673)||(36796373-36796507)
chr7 (540-665)||(18015583-18015708)
chr7 (542-673)||(30739052-30739184)
chr7 (540-661)||(41908119-41908241)
chr7 (540-673)||(44894030-44894164)
chr7 (540-661)||(6380085-6380206)
chr7 (302-384)||(7370013-7370094)
chr7 (540-601)||(4099970-4100031)
chr7 (540-601)||(7636327-7636388)
chr7 (540-601)||(46221704-46221765)
chr7 (549-660)||(25061846-25061957)
chr7 (540-638)||(773885-773983)
chr7 (540-594)||(12251289-12251343)
chr7 (540-601)||(11672588-11672649)
chr7 (540-670)||(8358295-8358426)
chr7 (543-675)||(33419121-33419255)
chr7 (544-601)||(42161125-42161182)
chr7 (303-359)||(40737760-40737816)
chr7 (454-529)||(40841157-40841233)
chr7 (540-592)||(44876156-44876208)
chr7 (541-675)||(41852302-41852434)
chr7 (306-384)||(36438117-36438194)
[»] chr2 (38 HSPs)
chr2 (449-676)||(13997241-13997469)
chr2 (477-673)||(39081328-39081525)
chr2 (449-670)||(29480545-29480768)
chr2 (449-673)||(1418840-1419065)
chr2 (457-669)||(36059821-36060035)
chr2 (455-667)||(38599338-38599551)
chr2 (540-673)||(19367420-19367554)
chr2 (285-384)||(13997534-13997633)
chr2 (540-673)||(15457430-15457563)
chr2 (540-673)||(21747231-21747364)
chr2 (540-665)||(27302529-27302654)
chr2 (540-673)||(38985710-38985842)
chr2 (540-661)||(41096539-41096660)
chr2 (540-673)||(42411559-42411692)
chr2 (540-670)||(2063738-2063868)
chr2 (540-661)||(6530601-6530722)
chr2 (540-665)||(7993570-7993695)
chr2 (540-673)||(34061857-34061990)
chr2 (541-665)||(31273168-31273291)
chr2 (454-661)||(26151658-26151870)
chr2 (540-661)||(13020365-13020486)
chr2 (540-673)||(18676312-18676446)
chr2 (540-661)||(45042331-45042455)
chr2 (540-673)||(18172941-18173073)
chr2 (544-673)||(18916059-18916188)
chr2 (595-667)||(32186206-32186278)
chr2 (455-527)||(38599593-38599665)
chr2 (296-384)||(39081617-39081704)
chr2 (540-670)||(45618909-45619039)
chr2 (540-601)||(4855995-4856056)
chr2 (540-673)||(1226267-1226399)
chr2 (540-585)||(17117646-17117691)
chr2 (540-601)||(25222325-25222386)
chr2 (307-342)||(1419172-1419207)
chr2 (291-374)||(29480386-29480469)
chr2 (540-632)||(18482507-18482600)
chr2 (540-585)||(42759757-42759802)
chr2 (296-384)||(36059660-36059748)
[»] chr4 (27 HSPs)
chr4 (449-673)||(35653888-35654114)
chr4 (454-673)||(22423614-22423837)
chr4 (540-672)||(43154789-43154921)
chr4 (449-665)||(21791456-21791673)
chr4 (540-673)||(24449054-24449189)
chr4 (454-671)||(5545261-5545481)
chr4 (455-666)||(10575437-10575647)
chr4 (540-665)||(32130791-32130916)
chr4 (540-673)||(45172646-45172778)
chr4 (540-673)||(19661309-19661442)
chr4 (540-661)||(23426167-23426288)
chr4 (540-673)||(34982154-34982287)
chr4 (540-673)||(55134138-55134271)
chr4 (544-673)||(27632327-27632457)
chr4 (540-661)||(28463589-28463710)
chr4 (540-601)||(41038252-41038313)
chr4 (540-673)||(53011642-53011775)
chr4 (540-660)||(29579823-29579943)
chr4 (540-673)||(11681743-11681878)
chr4 (540-673)||(11690022-11690157)
chr4 (540-601)||(44478041-44478102)
chr4 (549-631)||(16072566-16072648)
chr4 (540-665)||(23256532-23256657)
chr4 (290-359)||(24449347-24449416)
chr4 (540-661)||(29221622-29221743)
chr4 (296-384)||(35653735-35653823)
chr4 (302-340)||(22423938-22423976)
[»] chr8 (28 HSPs)
chr8 (449-673)||(3628655-3628881)
chr8 (449-673)||(32098085-32098312)
chr8 (540-673)||(35874854-35874989)
chr8 (540-673)||(34523952-34524085)
chr8 (540-673)||(39697939-39698072)
chr8 (455-620)||(36515069-36515229)
chr8 (540-665)||(5869323-5869446)
chr8 (540-673)||(23567275-23567408)
chr8 (540-661)||(43926324-43926445)
chr8 (540-631)||(3471572-3471663)
chr8 (454-664)||(42076046-42076260)
chr8 (540-673)||(18420610-18420744)
chr8 (540-673)||(12531489-12531622)
chr8 (540-673)||(43968071-43968205)
chr8 (540-601)||(18112118-18112179)
chr8 (540-673)||(13585228-13585362)
chr8 (540-601)||(1004060-1004122)
chr8 (540-661)||(30915288-30915410)
chr8 (540-631)||(27074546-27074637)
chr8 (540-673)||(7858014-7858148)
chr8 (290-359)||(35875147-35875216)
chr8 (544-601)||(42951774-42951831)
chr8 (540-661)||(44665047-44665168)
chr8 (454-602)||(29372358-29372508)
chr8 (305-384)||(42076330-42076408)
chr8 (296-339)||(33453021-33453064)
chr8 (305-351)||(18112378-18112424)
chr8 (291-365)||(36514905-36514978)
[»] chr3 (37 HSPs)
chr3 (449-672)||(42009170-42009395)
chr3 (457-673)||(51146867-51147085)
chr3 (475-673)||(36538120-36538320)
chr3 (455-672)||(50677228-50677447)
chr3 (449-673)||(7766991-7767222)
chr3 (449-672)||(27303118-27303341)
chr3 (449-673)||(46904662-46904898)
chr3 (540-673)||(48627030-48627163)
chr3 (540-671)||(51939557-51939688)
chr3 (540-673)||(41707056-41707190)
chr3 (540-673)||(21784785-21784918)
chr3 (540-673)||(23164573-23164706)
chr3 (540-661)||(25599087-25599208)
chr3 (548-673)||(54430482-54430607)
chr3 (540-673)||(46791698-46791832)
chr3 (454-672)||(52655034-52655257)
chr3 (540-673)||(21596265-21596398)
chr3 (540-661)||(28132736-28132857)
chr3 (540-661)||(13401401-13401522)
chr3 (540-673)||(18408121-18408254)
chr3 (540-673)||(8364101-8364235)
chr3 (540-673)||(29387755-29387889)
chr3 (540-673)||(40152130-40152264)
chr3 (296-384)||(46904963-46905051)
chr3 (543-632)||(19965884-19965973)
chr3 (540-661)||(24252563-24252683)
chr3 (291-356)||(27303436-27303501)
chr3 (551-663)||(1649843-1649955)
chr3 (296-384)||(7767287-7767375)
chr3 (558-674)||(43905862-43905978)
chr3 (540-673)||(27729770-27729904)
chr3 (544-661)||(23067730-23067847)
chr3 (297-384)||(42009039-42009126)
chr3 (291-338)||(51147205-51147252)
chr3 (546-632)||(1255057-1255143)
chr3 (540-600)||(20762052-20762112)
chr3 (484-529)||(15987276-15987321)
[»] chr6 (26 HSPs)
chr6 (449-661)||(3748476-3748690)
chr6 (457-661)||(30915277-30915488)
chr6 (584-673)||(7341139-7341228)
chr6 (540-673)||(12614717-12614850)
chr6 (540-673)||(2618285-2618418)
chr6 (449-578)||(6294279-6294410)
chr6 (540-659)||(628096-628215)
chr6 (540-673)||(6360690-6360822)
chr6 (540-673)||(29308468-29308601)
chr6 (540-673)||(31860933-31861064)
chr6 (540-672)||(19231544-19231675)
chr6 (540-673)||(1690634-1690767)
chr6 (540-665)||(1093042-1093166)
chr6 (449-601)||(21946109-21946261)
chr6 (594-673)||(6294209-6294288)
chr6 (540-639)||(14893418-14893517)
chr6 (540-673)||(57617-57751)
chr6 (540-665)||(6754144-6754269)
chr6 (540-673)||(7525167-7525301)
chr6 (454-661)||(29149345-29149556)
chr6 (540-594)||(29401149-29401203)
chr6 (540-673)||(3514851-3514985)
chr6 (548-594)||(22503752-22503798)
chr6 (540-632)||(350385-350478)
chr6 (303-384)||(3748329-3748411)
chr6 (558-654)||(31234862-31234956)
[»] scaffold0126 (1 HSPs)
scaffold0126 (542-673)||(16639-16771)
[»] scaffold0606 (1 HSPs)
scaffold0606 (543-665)||(8399-8521)
[»] scaffold0181 (1 HSPs)
scaffold0181 (540-601)||(17133-17194)
[»] scaffold0100 (1 HSPs)
scaffold0100 (540-661)||(46174-46295)
[»] scaffold0564 (2 HSPs)
scaffold0564 (454-529)||(1138-1214)
scaffold0564 (540-578)||(1086-1124)
[»] scaffold0035 (1 HSPs)
scaffold0035 (543-578)||(22809-22844)


Alignment Details
Target: chr5 (Bit Score: 138; Significance: 1e-71; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 454 - 670
Target Start/End: Complemental strand, 17325996 - 17325777
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattc 551  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||            ||||||||||||    
T  17325996 gtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaaggggaaagcgaatggtttatgcgaaaaagaaataattgttgtgattc 17325897  T
Q  552 tttcaatgaaatagttttt-caaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagag 650  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  17325896 tttcaatgaaatagttttttcaaattgactgattaagtgattattcaaatcgatggtagtttaatagcatcaaatttatgtccagaaagtggaactagag 17325797  T
Q  651 tctagaaaaaactcatacgt 670  Q
    |||| |||||||||||||||    
T  17325796 tctaaaaaaaactcatacgt 17325777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 478 - 672
Target Start/End: Complemental strand, 138270 - 138075
Alignment:
Q  478 ttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattctttcaatgaaatagtttttcaaat 575  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||||||||||           ||||||||||| |||||||||||||| |||||||||    
T  138270 ttggaatgtcactactacttcgtag-aaaggggaaaacgaatggtttatgcggaaaaaaaataattgttgtgattatttcaatgaaatagcttttcaaat 138172  T
Q  576 tgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 672  Q
    ||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||   ||||| |||||||||||||||||||||||||||||||    
T  138171 tgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccgaaaagtagaactagagtctagaaaaaactcatacgtgt 138075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 449 - 660
Target Start/End: Complemental strand, 10033702 - 10033489
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||            || ||||    
T  10033702 gagaggtgaaatttacctaacggtttcgtttggaatgtcactcctacgtcgtaggaaaggg-aaaacgaatggtttatgcgaaaaagaaataattattgt 10033604  T
Q  547 gattctttcaatgaaatagtttttcaaattgactg-attaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaac 645  Q
    |||||||||||| |||||| ||||||||||||||  | | ||||||||| ||||||||||| ||||| ||| ||||||||||||||  ||||||| ||||    
T  10033603 gattctttcaataaaatagcttttcaaattgactttaatcagtgattatacaaattgatgggggtttgatagcatcaaatttatgtacagaaagtagaac 10033504  T
Q  646 tagagtctagaaaaa 660  Q
    |||||||||||||||    
T  10033503 tagagtctagaaaaa 10033489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 16515587 - 16515454
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||||||    
T  16515587 ttgttgtgattctttcaataaaataatttttcaaattgattgattaagtgattattaaaattgatggtgttttaatagcatcaaatttatgtctagaaag 16515488  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
    | |||||| ||| || ||||| ||||||||||||    
T  16515487 tagaactaaagtttaaaaaaagctcatacgtgta 16515454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 454 - 640
Target Start/End: Complemental strand, 18873611 - 18873416
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacg---aatggtttatgcg--gnnnnnnnnnttgttgtga 548  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||            |||||||||    
T  18873611 gtgaaatttacctaacggtttcgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaataatggtttatgcgaaaaagaaataattgttgtga 18873512  T
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattca----aattgatggtggtttaataacatcaaatttatgtcaagaaagt 640  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| ||    ||||||||||||||| ||| ||||||||||||||  |||||||    
T  18873511 ttctttcaatgaaatagcttttcaaattggctgattaagtggttatacaaattaattgatggtggtttgatagcatcaaatttatgttcagaaagt 18873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 20976048 - 20975927
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| ||||||||| |||  | |||||||||||||||| |     
T  20976048 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaaatgattatacaaattggtggtggtttgatagtaccaaatttatgtcaagataa 20975949  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      |||||| |||||||||||||    
T  20975948 gagaactaaagtctagaaaaaa 20975927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 42291882 - 42292015
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| ||| |||  | |||||||||||| ||| ||    
T  42291882 ttgttgtgattctttcaatgaaatagattttcaaattgactgattaagtgattatacaaattggtggtgatttgatagtaccaaatttatgtccagatag 42291981  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||| ||||||||| ||| |||||||    
T  42291982 gagaactaaagtttagaaaaaagtcaaacgtgta 42292015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 43511681 - 43511548
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||| ||| ||    
T  43511681 ttgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtccagatag 43511582  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  43511581 gagaactaaagtctagaaaaaactcaaacgtgta 43511548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 3349730 - 3349862
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||   | |||||||||||| ||| ||    
T  3349730 ttgttgtgattctttctatgaaatagcttttcaaattgactgattaagtcattattccaattggtagtggtttgat-gtaccaaatttatgtccagatag 3349828  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  3349829 gagaactaaagtctagaaaaaactcaaacgtgta 3349862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 665
Target Start/End: Original strand, 4734583 - 4734708
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||| |||| ||| |||||| ||||||| ||||||||| |||  | || ||||||||| ||| ||    
T  4734583 ttgttgtgattctttcaatgaaatagattttcaaattgagtgatcaagggattatacaaattggtggtggtttgatagtaccagatttatgtccagatag 4734682  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      |||||| |||||||||||||||||    
T  4734683 gagaactaaagtctagaaaaaactca 4734708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 10591274 - 10591407
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||    
T  10591274 ttgttgtgattctttcaatgaaataacttttcaaattaactgattaagtgattatacaaattgggggtggtttgatagtaccatatttatgttcagatag 10591373  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  10591374 gagaactaaagtctagaaaaaactcaaacgtgta 10591407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 540 - 671
Target Start/End: Complemental strand, 40956376 - 40956245
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||||  |   |||| ||  ||||| ||||||||| | ||||    
T  40956376 ttgttgtgattcttttaatgaaatagtttttcaaattaaatgattaagtgattatacaaattggagaatgtttgattgcatcagatttatgtccacaaag 40956277  T
Q  640 tggaactagagtctagaaaaaactcatacgtg 671  Q
      |||||||||||||||||||||||| |||||    
T  40956276 gagaactagagtctagaaaaaactcaaacgtg 40956245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 5829446 - 5829315
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||||||||||| |||||||| | |||||| |||  | || ||||||||||||| ||    
T  5829446 ttgttgtgattcttttaatgaaatagcttt--aaattgactgattaagtgattatacaaattgaggttggtttgatagtaccagatttatgtcaagatag 5829349  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||| |||||||||| |||||||    
T  5829348 gagaactaaagtctataaaaaactcaaacgtgta 5829315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 548 - 670
Target Start/End: Complemental strand, 27351404 - 27351282
Alignment:
Q  548 attctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaacta 647  Q
    |||||||||||||||||  ||| ||||||||||||||||||| |||| |||||||  |||||||| ||| || |||||||||||  ||||||  ||||||    
T  27351404 attctttcaatgaaataactttccaaattgactgattaagtggttatacaaattggaggtggtttgatagcaccaaatttatgttcagaaaggagaacta 27351305  T
Q  648 gagtctagaaaaaactcatacgt 670  Q
    ||||||||||||| |||| ||||    
T  27351304 gagtctagaaaaatctcaaacgt 27351282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 13656273 - 13656137
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt---gatggtggtttaataacatcaaatttatgtcaaga 636  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||   ||||||  |||  ||  |||  ||||||||  | |    
T  13656273 ttgttgtgattctttcaatgaaataacttttcaaattgactgattaagtgattatacaaattagggatggtttttttttaggatccgatttatgtacaaa 13656174  T
Q  637 aagtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |||  |||||||||||||||||||||||| |||||||    
T  13656173 aaggagaactagagtctagaaaaaactcaaacgtgta 13656137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 298 - 375
Target Start/End: Complemental strand, 17326152 - 17326075
Alignment:
Q  298 gtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtag 375  Q
    |||||||||||||| |||| |||||||||||||||||||||| || || ||||||||||||||||||||| |||||||    
T  17326152 gtttctatgaaatatgaggctcggttctatttttaaaataggctccagtaaaatcaaaacgcaattctttttgtgtag 17326075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 17513937 - 17514070
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||| |||||||  |||||||||||||||||||||||||||| |||||||  ||||||||  ||  | || |||||| || ||| ||    
T  17513937 ttgttgtgattctttcagtgaaataacttttcaaattgactgattaagtgattatacaaattgggggtggtttgttagtaccagatttatatccagatag 17514036  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||||||||| |||| |||||||    
T  17514037 gagaactaaagtctagaaaaacctcaaacgtgta 17514070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 29156253 - 29156120
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||   |||||||| |||  | || ||||||||  ||| ||    
T  29156253 ttgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattaggggtggtttgatagtaccagatttatgttcagatag 29156154  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
       ||||| ||||||||||||||||| |||||||    
T  29156153 gataactatagtctagaaaaaactcaaacgtgta 29156120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 665
Target Start/End: Complemental strand, 40779254 - 40779130
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||| | ||||| |||||||||||||||||||| |||||  |||||| |||||||  | | |||| ||||||||||||||||||  ||||||    
T  40779254 ttgttgtgattcct-caatggaatagtttttcaaattgacttattaaacgattatacaaattggggatagtttgataacatcaaatttatgttcagaaag 40779156  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      |||||||| |||||||||||||||    
T  40779155 gagaactagactctagaaaaaactca 40779130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 449 - 599
Target Start/End: Original strand, 7390309 - 7390460
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||| ||||||||  |||||| ||||||||| ||| |||| |||||||||||||||||||||||||||||            |||| ||    
T  7390309 gagaggtgaaatttatctaacggtgtcgtttg-aatgtcacttctatgtcgcaggaaaggggaaaacgaatggtttatgcgaaaaagaaataattgtcgt 7390407  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaa 599  Q
    ||||||||| ||||||||  |||| ||||||||||||||||||||||| ||||    
T  7390408 gattctttcgatgaaataactttttaaattgactgattaagtgattatacaaa 7390460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 19099315 - 19099376
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  19099315 ttgttgtgattctttcaatgaaatagctttttaaattgactgattaagtgattatacaaatt 19099376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 26377775 - 26377896
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| || ||| ||||||||| ||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  26377775 ttgttgtgattctttcaatgaaatagcttctcacattgactgaataagtgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaag 26377874  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  26377875 gagaactagagtctagaaaaaa 26377896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 16515814 - 16515726
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | || ||||| |||||||| || ||| ||||||| ||||||||    
T  16515814 ccgttcctatgaaataggaggttcggttctatttttaaaataggcccgagtaaaataaaaacgcatttttttgtgtgtagctaagcttc 16515726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 13474693 - 13474559
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    ||||||||||||||||||||||| |  |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| |||    
T  13474693 ttgttgtgattctttcaatgaaacaacttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaa 13474594  T
Q  639 gtggaactagagtctag-aaaaaactcatacgtgta 673  Q
    |  |||||||||| ||| |||||||||| |||||||    
T  13474593 g-agaactagagtttagaaaaaaactcaaacgtgta 13474559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 12661372 - 12661311
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||||||    
T  12661372 ttgttgtgattctttcaatgaaatagctttccaaattgactggttaagtgattatacaaatt 12661311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 13423927 - 13423866
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| |||  ||||||| ||||||||||||||| ||||||    
T  13423927 ttgttgtgattctttcaatgaaatagctttctaaattgattgattaagtgattatacaaatt 13423866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 542 - 661
Target Start/End: Original strand, 36718570 - 36718689
Alignment:
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtg 641  Q
    ||||||||||||||||| |||||  ||| |||||||||||||||| ||||||| ||||||   |||||||| |||  |||  ||| ||||  | ||||      
T  36718570 gttgtgattctttcaataaaataactttacaaattgactgattaaatgattatacaaattaggggtggtttgataggatccgattcatgtacaaaaagga 36718669  T
Q  642 gaactagagtctagaaaaaa 661  Q
    ||||||||||||||||||||    
T  36718670 gaactagagtctagaaaaaa 36718689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 7390156 - 7390244
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||   |||  ||||| |||||| |||| ||| ||||||| ||||||||    
T  7390156 ccgttcctatgaaatagaaggctcggttctatttttaaaatagtccctaataaaataaaaacgtaattttttgtgtgtagctaagcttc 7390244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 629
Target Start/End: Complemental strand, 931411 - 931354
Alignment:
Q  572 aaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttat 629  Q
    ||||||||||||||||||||||| |||||||   ||| ||||||| ||||||||||||    
T  931411 aaattgactgattaagtgattatacaaattgggtgtgatttaatagcatcaaatttat 931354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 33281730 - 33281677
Alignment:
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaat 600  Q
    ||||||||||||||||||  |||| ||||||||| ||||||||||||| |||||    
T  33281730 gattctttcaatgaaataactttttaaattgactaattaagtgattatacaaat 33281677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 294 - 384
Target Start/End: Original strand, 8379197 - 8379286
Alignment:
Q  294 gaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||||||  ||||||||||||| ||||| ||| ||||||||||||| ||||| ||||| |||| | | || ||| |||||||||| |||||    
T  8379197 gaccgttcttatgaaataggagattcggctctctttttaaaatagg-tctagtaaaataaaaatggatttttttttgtgtagttatgcttc 8379286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 931677 - 931636
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaatag 338  Q
    |||| |||||||||||||||||||| ||| ||||||||||||    
T  931677 cgttcctatgaaataggaggttcggctctctttttaaaatag 931636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 291 - 383
Target Start/End: Original strand, 3349479 - 3349571
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggt-tctaggaaaatcaaaacgcaattctttctgtgtagttaagctt 383  Q
    |||||||||  ||||||||||||||| |||| ||| | |||||||||||| || |  ||||| ||||||||||| ||| ||||||| |||||||    
T  3349479 caggaccgtccctatgaaataggaggctcggctctctatttaaaataggtctccaataaaataaaaacgcaatt-tttttgtgtagctaagctt 3349571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 2e-70; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 454 - 673
Target Start/End: Original strand, 17674267 - 17674487
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattc 551  Q
    |||||||||||||||||||  | ||||||||||||||| ||||||||||||||||||||||| |||||||||||||            ||||||||||||    
T  17674267 gtgaaatttacctaacggtgtcatttggaatgtcactcttacgtcgtaggaaaggggaaaacaaatggtttatgcgaaaaagaaataattgttgtgattc 17674366  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagt 651  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||| |||||||||    
T  17674367 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaatagcatcaaatttatatctagaaagtgaaactagagt 17674466  T
Q  652 ctagaaaaaactcatacgtgta 673  Q
    |||| |||||||||||||||||    
T  17674467 ctag-aaaaactcatacgtgta 17674487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 449 - 666
Target Start/End: Original strand, 22386744 - 22386964
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttg 545  Q
    |||| ||||||||||  ||||| |  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||           |   |||||    
T  22386744 gagatgtgaaatttatttaacgatgtcgtttggaatgtcactcctacgtcgtaggaaaggggaaaacaaatggtttatgcaaaaaaaatattaattgttg 22386843  T
Q  546 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaac 645  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||| ||| ||||||||    
T  22386844 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattgttcaaattgatggtggttaaatagcatcaaatttatgtccagacagtggaac 22386943  T
Q  646 tagagtctagaaaaaactcat 666  Q
    |||||||||||||||||||||    
T  22386944 tagagtctagaaaaaactcat 22386964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 454 - 673
Target Start/End: Complemental strand, 24556957 - 24556736
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattc 551  Q
    |||||||||||||||||||  |||||||||||||||||||||||  |||||||  | |||||||||||||||||||            ||||||||||||    
T  24556957 gtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtgataggaaaaagaaaaacgaatggtttatgcgaaaaagaaataattgttgtgattc 24556858  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagt 651  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||||||| ||||||    
T  24556857 tttaaatgaaatagtttttcaaattgacttattaagtgattattcaaattgatggtggtttaatagcaccaaatttatgttgagaaagtggaattagagt 24556758  T
Q  652 ctagaaaaaactcatacgtgta 673  Q
    ||||||||||||||||||||||    
T  24556757 ctagaaaaaactcatacgtgta 24556736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 459 - 668
Target Start/End: Complemental strand, 42740256 - 42740045
Alignment:
Q  459 atttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattctttca 556  Q
    ||||||||||| ||  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||            |||||| ||||||||||    
T  42740256 atttacctaacagtttcatttggaatgtcactcctacgtcgtaggaaaggggaaaacgaattgtttatgcgaaaaagaaataattgttgcgattctttca 42740157  T
Q  557 atgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctaga 656  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||| |||| ||| ||||||| ||||||| ||||||| |||||||||||||||    
T  42740156 atgaaatagtttttcaaattgactaattaagttattatacaaattgatggttgtttgatagcatcaaacttatgtccagaaagtagaactagagtctaga 42740057  T
Q  657 aaaaactcatac 668  Q
    ||||||||||||    
T  42740056 aaaaactcatac 42740045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 449 - 673
Target Start/End: Original strand, 37873665 - 37873897
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgta-----ggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--tt 541  Q
    |||| ||||||||||| |||| ||  ||||||| |||||||||||||||||||     ||||||||||||||||||||||||||| |           ||    
T  37873665 gagaggtgaaatttacgtaacagtgtcgtttggcatgtcactcctacgtcgtatcgtaggaaaggggaaaacgaatggtttatgcagaaaagaaataatt 37873764  T
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtg 641  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||| |||||||     
T  37873765 gttgtgattctttcaatgaaacagtttttcaaattaactgattaagtgactatacaaattgatggtggtttgatagcatcaaatttatgtctagaaagta 37873864  T
Q  642 gaactagagtctag-aaaaaactcatacgtgta 673  Q
    |||||||||||||| ||||||||||||||||||    
T  37873865 gaactagagtctagaaaaaaactcatacgtgta 37873897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 449 - 658
Target Start/End: Original strand, 44836633 - 44836840
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnttgttgtga 548  Q
    |||| |||||||||||||| ||||  | |||||||||||||||||||||||| |||||||| |||||||||||||||||||           || |||||    
T  44836633 gagatgtgaaatttacctagcggtgtcatttggaatgtcactcctacgtcgtgggaaagggaaaaacgaatggtttatgcgaaaaagaaa--tgatgtga 44836730  T
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactag 648  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||  ||||||| |||||||    
T  44836731 ttctttcagtgaaatagtttttcaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgttcagaaagtagaactag 44836830  T
Q  649 agtctagaaa 658  Q
    | ||||||||    
T  44836831 aatctagaaa 44836840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 449 - 613
Target Start/End: Original strand, 13120774 - 13120940
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||            |||| ||    
T  13120774 gagaggtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaaggggaaaatgaatggtttatgcgaaaaagaaataattgtggt 13120873  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggttta 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13120874 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattaatggtggttta 13120940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 543 - 663
Target Start/End: Complemental strand, 38263924 - 38263804
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtgg 642  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| || |||||||| ||| ||||||||||| ||||||||||||||| | |||||||    
T  38263924 ttgtgattctatcaatgaaatagttttttaaattgactgattaagtaataattcaaatcgatagtggtttaatagcatcaaatttatgtccaaaaagtgg 38263825  T
Q  643 aactagagtctagaaaaaact 663  Q
    |||||||||||||||||||||    
T  38263824 aactagagtctagaaaaaact 38263804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 449 - 673
Target Start/End: Original strand, 27703437 - 27703663
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||| ||  |||||||| |||||||| | ||| || | |||||| |||||||||||||||||||            |||||||    
T  27703437 gagaggtgaaatttacctaacagtgtcgtttggattgtcactcttccgtggtggaaaagggaaaaacgaatggtttatgcgaaaatgaaatgattgttgt 27703536  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatg-tcaagaaagtggaac 645  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||||||| |||||||  |||||||| ||| ||||||||||||| |||| ||||  ||||    
T  27703537 gattctttcgatgaaatagctttccaaattgactgattaagtgattatacaaattgggggtggtttgatagcatcaaatttatgttcaaaaaag-agaac 27703635  T
Q  646 tagagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||||||||||| |||||||    
T  27703636 tagagtctagaaaaaactcaaacgtgta 27703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 454 - 673
Target Start/End: Original strand, 26486286 - 26486499
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattc 551  Q
    |||||||||||| ||||||  | |||||||||||||| |||||||||||||||| ||||||||||| |||||||||            ||||| |||||     
T  26486286 gtgaaatttaccaaacggtgtcatttggaatgtcacttctacgtcgtaggaaagaggaaaacgaatagtttatgcgaaaaagaaataattgttatgattt 26486385  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagt 651  Q
    |||||||||||||| ||||||        |||||||||||||| |||||||||| |||||| ||| |||||||||||| || ||||||| ||||||||||    
T  26486386 tttcaatgaaatagcttttca--------gattaagtgattatacaaattgatgatggtttgatagcatcaaatttatttccagaaagtagaactagagt 26486477  T
Q  652 ctagaaaaaactcatacgtgta 673  Q
     |||||||||||||||||||||    
T  26486478 ttagaaaaaactcatacgtgta 26486499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 12971469 - 12971336
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||  |||||||| |||| |||| ||||||||| ||| ||    
T  12971469 ttgttgtgattctttcgatgaaatagcttttcaaattgactgattaagtgattatacaaattgggggtggtttgataatatcagatttatgtccagatag 12971370  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  12971369 gagaactaaagtctagaaaaaactcaaacgtgta 12971336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 540 - 657
Target Start/End: Complemental strand, 50371197 - 50371080
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||| ||| |||||| ||||| || ||||||    
T  50371197 ttgttgtgattctttcaatgaaacagtttttcaaattgactgattaagtgattatacaaattgagggtgatttgatagcatcaactttatatccagaaag 50371098  T
Q  640 tggaactagagtctagaa 657  Q
      ||||||||||||||||    
T  50371097 gagaactagagtctagaa 50371080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 540 - 674
Target Start/End: Complemental strand, 15441354 - 15441219
Alignment:
Q  540 ttgttgtgattctttc-aatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaa 638  Q
    |||||||||||||||  |||||||||| |||  ||||||| ||||||||||||||| |||||||  |||||||| ||| ||| | ||||||||| |||||    
T  15441354 ttgttgtgattctttttaatgaaatagctttataaattgagtgattaagtgattatacaaattgtaggtggtttgatagcattatatttatgtctagaaa 15441255  T
Q  639 gtggaactagagtctagaaaaaactcatacgtgtat 674  Q
    |  |||||||||||||||||||||||| ||||||||    
T  15441254 ggagaactagagtctagaaaaaactcaaacgtgtat 15441219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 10109783 - 10109662
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||  ||||||||| |||  ||| |||||||||  | ||||    
T  10109783 ttgttgtgattctttcaatgaaattgctttccaaattgactgattaagtgattatacaaattagtggtggtttgataggatccaatttatgtacaaaaag 10109684  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  10109683 gagaactagagtctagaaaaaa 10109662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 5560546 - 5560413
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||||||| |||||||  ||||||||  || || || ||||||||| |||||     
T  5560546 ttgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgggggtggtttggtagcaccagatttatgtccagaaat 5560447  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||| ||||| |||| |||||||    
T  5560446 gagaactatagtctaaaaaaatctcaaacgtgta 5560413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 12884138 - 12884272
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  12884138 ttgttgtgattctttcaatgaaatagctttttaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 12884237  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
       ||||||||||||| |||||||||| |||||||    
T  12884238 gaaaactagagtctagaaaaaaactcaaacgtgta 12884272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 6150784 - 6150663
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||  |||||   |||||||| |||  |||  ||||||||  | ||||    
T  6150784 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaaatgattatataaattaggggtggtttgataggatctgatttatgtacaaaaag 6150685  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  6150684 gagaactagagtctagaaaaaa 6150663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 540 - 616
Target Start/End: Original strand, 33124631 - 33124707
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaata 616  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||   ||||||||||||    
T  33124631 ttgttgtgattctttcaatgaaatagcttttcaaattgacttattaagtgattatacaaattagaggtggtttaata 33124707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 297 - 384
Target Start/End: Complemental strand, 24557110 - 24557023
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||| || | ||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||||    
T  24557110 cgtttatatgaaatatgatgctcgattctatttttaaaataggtcctagtaaaatcaaaacgcaattctttttgtgtagctaagcttc 24557023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 50552558 - 50552424
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  50552558 ttgttgtgattctttcaatgaaataacttttcaaattgaccgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 50552459  T
Q  640 tggaactagagtcta-gaaaaaactcatacgtgta 673  Q
      |||||||||||||  |||||||||| |||||||    
T  50552458 gagaactagagtctacaaaaaaactcaaacgtgta 50552424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 18127938 - 18127999
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  18127938 ttgttgtgattcttgcaatgaaatagcttttcaaattgactgattaagtgattatacaaatt 18127999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 30899719 - 30899598
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| ||||||   |||| ||| |||  |||  ||||||||  | ||||    
T  30899719 ttgttgtgattctttcaatgaaatagctttccaaattgactaattaagtgattatacaaattaggggtgatttgataggatccgatttatgtacaaaaag 30899620  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  30899619 gagaactagagtctagaaaaaa 30899598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 611 - 791
Target Start/End: Original strand, 13121749 - 13121925
Alignment:
Q  611 ttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtattgnnnnnnnnnnnnngtaacatataattttttaatt 710  Q
    |||||| |||||||||||| || |||||||||||||||||| ||||||||||||||||||||  ||             |||||||||| ||||||||||    
T  13121749 ttaatagcatcaaatttatatccagaaagtggaactagagtatagaaaaaactcatacgtgtgctg--aagaaaaaaaagtaacatatacttttttaatt 13121846  T
Q  711 taagtgggggtgtgggattataannnnnnnngaggcccatagtttttagagacttgattcggtaacgcttcttgcactccc 791  Q
    ||||||||||||| | |||||||        ||| ||||||| ||||||||||| | ||||||| ||||||||||||||||    
T  13121847 taagtgggggtgt-gtattataatttttgttgagccccatag-ttttagagactcggttcggtagcgcttcttgcactccc 13121925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 25930667 - 25930532
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||||||   ||| |||| |||  |||| ||||||||  | |||     
T  25930667 ttgttgtgatcctttcaatgaaatagcttttcaagttgactgattaagtgattatacaaattaggggtagtttgataggatcagatttatgtacaaaaat 25930568  T
Q  640 tggaactagagtctag--aaaaaactcatacgtgta 673  Q
      ||||||||||||||  |||||||||| |||||||    
T  25930567 gagaactagagtctagacaaaaaactcaaacgtgta 25930532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 1269614 - 1269489
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| |||||||||| |||||||||||||| |||      |||  |||||||  |||||||| ||| ||||| ||||||||| ||||||    
T  1269614 ttgttgtgattcttttaatgaaatagcttttcaaattgactaatt------tta--caaattgggggtggtttcatagcatcagatttatgtctagaaag 1269523  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      ||| |||||||||||||||||||| |||||||    
T  1269522 gagaattagagtctagaaaaaactcaaacgtgta 1269489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 17674110 - 17674197
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| |||||||||| ||||||||  ||||||||||||||||| || || ||||||||||| ||||||||| ||||||||||| ||||    
T  17674110 cgttcctatgaaataagaggttcgactctatttttaaaataggctccagtaaaatcaaaacacaattctttttgtgtagttaaacttc 17674197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 290 - 384
Target Start/End: Original strand, 37873505 - 37873599
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||  | || ||||| |||| | |||| ||| ||||||||||||||||    
T  37873505 gcagggccgtttctatgaaataggaggctcgattctatttttaaaataggccccagtaaaataaaaatgtaattttttgtgtgtagttaagcttc 37873599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 17487284 - 17487405
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  ||| |||||||| | |||||||||||||  |||||   |||||||| |||  |||  |||||||| || ||||    
T  17487284 ttgttgtgattctttcaatgaaataactttccaaattgatttattaagtgattatataaattaggggtggtttgataggatccgatttatgtaaaaaaag 17487383  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  17487384 gagaactagagtctagaaaaaa 17487405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 48722371 - 48722432
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||    
T  48722371 ttgttgtgattatttcaatgaaatagctttccaaattgactgattaagtgattatacaaatt 48722432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 20905288 - 20905423
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||||||  || |||||||||||| ||||||||||| ||||||   | |||||| |||  || | ||||||||  | ||||    
T  20905288 ttgttgtgattctttcaatgaaatagacttccaaattgactgaataagtgattatacaaattagggctggtttgataggattagatttatgtacaaaaag 20905387  T
Q  640 tggaactagagtctagaa--aaaactcatacgtgta 673  Q
      ||||||||||||||||  |||||||| |||||||    
T  20905388 gagaactagagtctagaaataaaactcaaacgtgta 20905423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 582 - 665
Target Start/End: Original strand, 31369432 - 31369515
Alignment:
Q  582 attaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactca 665  Q
    ||||||||||||| ||||||||  ||||||| ||||||||| ||||||||| ||||||  ||| |||||| |||||||||||||    
T  31369432 attaagtgattatacaaattgaaagtggtttgataacatcagatttatgtccagaaaggagaattagagtttagaaaaaactca 31369515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 454 - 601
Target Start/End: Complemental strand, 160 - 9
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    |||||||||| ||||||||  |||||||| | |||||||||  || |||| |||||| |||||||||||||||||||          |   |||||||||    
T  160 gtgaaatttatctaacggtgtcgtttggatttgtcactcctctgttgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgat 61  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||   ||| |||||||||||||||||||||||| ||||||    
T  60 tctttcaatgaaatcactttccaaattgactgattaagtgattatacaaatt 9  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 543 - 661
Target Start/End: Original strand, 14084705 - 14084823
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtgg 642  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||||||||| ||  ||   |||| ||| |||  |||| ||||||||  | ||||  |    
T  14084705 ttgtgattctttcaatgaaatagctttctaaattgactgattaagtgattatacattttaggggtgatttgataggatcagatttatgtacaaaaaggag 14084804  T
Q  643 aactagagtctagaaaaaa 661  Q
    |||||||||||||||||||    
T  14084805 aactagagtctagaaaaaa 14084823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 29208099 - 29208220
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    ||||||||||||||||||||||||||  || || ||||||||||||| ||||||| ||||||   |||||||| |||  || | |||||||| ||| |||    
T  29208099 ttgttgtgattctttcaatgaaatagacttccagattgactgattaaatgattatacaaattaggggtggtttgatatgattagatttatgtacaaaaaa 29208198  T
Q  639 gtggaactagagtctagaaaaaa 661  Q
    |  ||||||||||||||||||||    
T  29208199 g-agaactagagtctagaaaaaa 29208220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 602
Target Start/End: Original strand, 30004908 - 30004970
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||| ||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||    
T  30004908 ttgttgcgattctttcaatgaaatagcttttcaaattaattgattaagtgattatacaaattg 30004970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 290 - 384
Target Start/End: Complemental strand, 42740420 - 42740326
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||  | || ||||| |||||| |||| ||| ||||| ||||| ||||    
T  42740420 gcagggccgttcctatgaaataggaggctcggttctatttttaaaataggccccagtaaaataaaaacgtaattttttttgtgtggttaaacttc 42740326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 51110102 - 51110156
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||| |||  |||||||||||||||||||||||    
T  51110102 ttgttgtgattctttcaatgaaatagctttctaaattgactgattaagtgattat 51110156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 52055615 - 52055561
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||| ||| |||||||| |||||||||||||||    
T  52055615 ttgttgtgattctttcaatgaaatagctttccaaattgattgattaagtgattat 52055561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 546 - 602
Target Start/End: Complemental strand, 3907528 - 3907472
Alignment:
Q  546 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    ||||||||||||||||||| ||||||||||||| ||||||| ||||||| |||||||    
T  3907528 tgattctttcaatgaaataatttttcaaattgattgattaaatgattatacaaattg 3907472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 198
Target Start/End: Original strand, 25271713 - 25271752
Alignment:
Q  159 aatctatgttaattttacatcaagtttatcatgctacttt 198  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25271713 aatctatgttaattttacatcaagtttatcatgctacttt 25271752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 28885672 - 28885733
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||| ||||||||||| |||  ||||||| ||||||||||||||| ||||||    
T  28885672 ttgttgtgattcttacaatgaaatagctttcaaaattgattgattaagtgattatacaaatt 28885733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 558 - 601
Target Start/End: Original strand, 32810370 - 32810413
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  32810370 tgaaatagcttttcaaattgattgattaagtgattattcaaatt 32810413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 540 - 629
Target Start/End: Complemental strand, 9777477 - 9777387
Alignment:
Q  540 ttgttgtgattctttcaat-gaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttat 629  Q
    |||||||||||||||  || ||||||||| |||||||||||||||| |||||||||  ||||||  ||||||||  || ||||| ||||||    
T  9777477 ttgttgtgattctttttattgaaatagttattcaaattgactgattgagtgattatataaattgggggtggtttggtagcatcagatttat 9777387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 302 - 380
Target Start/End: Original strand, 22386597 - 22386675
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaag 380  Q
    ||||||||||||||| |||||| |||||||||||||||    || |||||||||| |||||| ||| | ||||||||||    
T  22386597 ctatgaaataggaggctcggttttatttttaaaataggccgcagtaaaatcaaaatgcaattttttttttgtagttaag 22386675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 291 - 384
Target Start/End: Original strand, 26486125 - 26486218
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| ||||| |||| |||||||||| ||||||||||||| ||||||||  | || ||||| |||| ||| || ||| ||||||| ||||||||    
T  26486125 cagggccgttcctataaaataggaggctcggttctattttcaaaataggcccgagtaaaataaaaatgcatttttttgtgtgtagctaagcttc 26486218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 4e-68; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 449 - 672
Target Start/End: Complemental strand, 7366843 - 7366618
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||||||||||| |||||  ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||            |||||||    
T  7366843 gagaggtgaaatttaccttacggtgtcgtttggaatgtcactcctacgtcgcaggaaaggggaaaatgaatggtttatgcgaaaaagaaataattgttgt 7366744  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    |||||||||||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  7366743 gattctttcaataaaatagtttttcaaattgacaaattaagtaattattcaaattgatggtggtttaatatcatcaaatttatgtccagaaagtggaact 7366644  T
Q  647 agagtctagaaaaaactcatacgtgt 672  Q
    ||||| ||||||||||||||||||||    
T  7366643 agagtatagaaaaaactcatacgtgt 7366618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 449 - 673
Target Start/End: Complemental strand, 26633519 - 26633293
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||||||||| |||||||  ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||            |||||||    
T  26633519 gagaggtgaaatttacttaacggtgtcgtttggaatgtcactcatacgtcgtgggaaagggaaaaatgaatggtttatgcgaaaaagaaatgattgttgt 26633420  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||    
T  26633419 gattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatggtggttttatagcatcaaatttatgtccagaaagtagaact 26633320  T
Q  647 agagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||||||||||||||||||    
T  26633319 agagtctagaaaaaactcatacgtgta 26633293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 454 - 673
Target Start/End: Original strand, 36438264 - 36438485
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt--tgttgtgattc 551  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||||||||| |          |  |||||||||||    
T  36438264 gtgaaatttacctaacggtgtcatttggaatgtcactcctacgtcgtaggaaaagggaaaacgaatggtttatgtgaaaaataaattattgttgtgattc 36438363  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagt 651  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||||||||||||||| ||||||| |||||||||     
T  36438364 tttcaatgaaatggtttttcaaattgactgattaagtgattatacaaattgatagtggtttgatagcatcaaatttatgtccagaaagtagaactagagc 36438463  T
Q  652 ctagaaaaaactcatacgtgta 673  Q
    ||||||||||||||||| ||||    
T  36438464 ctagaaaaaactcatacctgta 36438485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 449 - 669
Target Start/End: Original strand, 40737908 - 40738121
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnttgttgtga 548  Q
    |||| |||||||||||||||||||  | |||| |||||||||||||||||||||||||||||||||||||| |||||||||            |||||||    
T  40737908 gagaggtgaaatttacctaacggtgtcatttgaaatgtcactcctacgtcgtaggaaaggggaaaacgaatagtttatgcgaaaaa-------gttgtga 40738000  T
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactag 648  Q
    |||||||||| |||||| |||| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||    
T  40738001 ttctttcaataaaatagctttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtcaaaaaagtagaactag 40738100  T
Q  649 agtctagaaaaaactcatacg 669  Q
    ||| |||||||||||||||||    
T  40738101 agtttagaaaaaactcatacg 40738121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 478 - 674
Target Start/End: Original strand, 18895334 - 18895532
Alignment:
Q  478 ttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattctttcaatgaaatagtttttcaaat 575  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||            |||||||||||||||||||||||||  |||| ||||    
T  18895334 ttggaatgtcactcctacgtcgtaggtaaggggaaaacgaattgtttatgcgaaaaggaaataattgttgtgattctttcaatgaaataactttttaaat 18895433  T
Q  576 tgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgtat 674  Q
    ||||||||||| ||||||| |||||| || ||||||| ||||||||||||||||||| |  |||| ||||| |||||||||||||||||||||||||||    
T  18895434 tgactgattaattgattatacaaattaatagtggtttgataacatcaaatttatgtctaataagtagaactcgagtctagaaaaaactcatacgtgtat 18895532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 540 - 675
Target Start/End: Complemental strand, 9479190 - 9479055
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||||||||| ||||||    
T  9479190 ttgttgtgattctttcaacgaaatagttttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaag 9479091  T
Q  640 tggaactagagtctagaaaaaactcatacgtgtatt 675  Q
    | |||||||||| ||||||||| |||||||||||||    
T  9479090 tagaactagagtttagaaaaaaatcatacgtgtatt 9479055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 26282543 - 26282676
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||    
T  26282543 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtgcagatag 26282642  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  26282643 gagaactaaagtctagaaaaaactcaaacgtgta 26282676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 454 - 673
Target Start/End: Complemental strand, 32956927 - 32956704
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgatt 550  Q
    |||||||||||||||| ||  |||||||| | ||||||| | ||| || ||||||||||||||||||||||||||||            |||||||||||    
T  32956927 gtgaaatttacctaacagtgtcgtttggatttgtcactcatccgttgtgggaaaggggaaaacgaatggtttatgcgaaaaagaaatcattgttgtgatt 32956828  T
Q  551 ctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagag 650  Q
    ||||||||||||||  |||  ||||||||||||||| |||||||  ||||||  |||||||| ||| ||||| ||||||||| ||||||  |||||||||    
T  32956827 ctttcaatgaaataactttataaattgactgattaaatgattataaaaattgggggtggtttgatagcatcagatttatgtccagaaaggagaactagag 32956728  T
Q  651 tct-agaaaaaactcatacgtgta 673  Q
    ||| | |||||||||| |||||||    
T  32956727 tctaaaaaaaaactcaaacgtgta 32956704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 40001697 - 40001830
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||    
T  40001697 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattggaggtggtttgatagtaccagatttatgttcagatag 40001796  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||||||||| |||| |||||||    
T  40001797 aagaactaaagtctagaaaaacctcaaacgtgta 40001830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 33910127 - 33909993
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||   |||| ||| |||  |||| ||||||||  | ||||    
T  33910127 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagcgattatacaaattaggggtgatttgataggatcagatttatgtacaaaaag 33910028  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  33910027 gagaactagagtctagaaaaaaactcaaacgtgta 33909993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 1366072 - 1365939
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| ||    
T  1366072 ttgttgtgattctttctatgaaataacttttcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagatag 1365973  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||| ||||||| |||||||    
T  1365972 gagaactaaagtctagaagaaactcaaacgtgta 1365939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 541 - 670
Target Start/End: Complemental strand, 42312071 - 42311943
Alignment:
Q  541 tgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagt 640  Q
    |||||||||||||| |||||||||| |||||||||||||| || |||||||||| ||||| || ||| ||||  |||||||| ||||||||| |||||      
T  42312071 tgttgtgattcttttaatgaaatagcttttcaaattgactaatcaagtgattatacaaatcgagggtagttt-gtaacatcagatttatgtccagaaaag 42311973  T
Q  641 ggaactagagtctagaaaaaactcatacgt 670  Q
     ||| |||||||||||||||||||| ||||    
T  42311972 agaattagagtctagaaaaaactcaaacgt 42311943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 36796373 - 36796507
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| | ||| |||| |||  |||  ||||||||  | ||||    
T  36796373 ttgttgtgattctttcaatgaaataattttccaaattgactgattaagttattatacaaattaagggtagtttgataggatccgatttatgtacaaaaag 36796472  T
Q  640 tggaactag-agtctagaaaaaactcatacgtgta 673  Q
      ||||||| ||||||||||||||||| |||||||    
T  36796473 gagaactagaagtctagaaaaaactcaaacgtgta 36796507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 665
Target Start/End: Original strand, 18015583 - 18015708
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||||| ||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  18015583 ttgttgtgattctttcaatgaaatagctttccaaattgattgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 18015682  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
       |||||||||||||||||||||||    
T  18015683 gaaaactagagtctagaaaaaactca 18015708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 542 - 673
Target Start/End: Complemental strand, 30739184 - 30739052
Alignment:
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtg 641  Q
    ||||||||||||| |||||||||  ||||||||||||||||||||||||||||  ||||||| | |||||| ||| ||||  ||||||||| ||||||      
T  30739184 gttgtgattcttttaatgaaataacttttcaaattgactgattaagtgattataaaaattgaagatggtttgatagcatccgatttatgtccagaaagga 30739085  T
Q  642 gaactagagtctagaa-aaaactcatacgtgta 673  Q
    ||| | || ||||||| |||||||| |||||||    
T  30739084 gaattggaatctagaaaaaaactcaaacgtgta 30739052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 41908241 - 41908119
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||| | |||||||  |||||||| | | ||||| ||||||||| | |||     
T  41908241 ttgttgtgattctttcaatgaaacagcttttctaattgactgattaagtgattgtacaaattggaggtggtttgaaagcatcagatttatgtccaaaaaa 41908142  T
Q  640 tg-gaactagagtctagaaaaaa 661  Q
    || |||| |||||| ||||||||    
T  41908141 tgagaaccagagtcaagaaaaaa 41908119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 44894030 - 44894164
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||| ||||||   ||||||||||||  |||  ||||||||  | ||||    
T  44894030 ttgttgtgattctttcaataaaatagctttccaaattgattgattaagtgattatacaaattaggggtggtttaataggatccgatttatgtacaaaaag 44894129  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||| ||||||| |||||||||| |||||||    
T  44894130 aagaactatagtctagaaaaaaactcaaacgtgta 44894164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 6380085 - 6380206
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||||||  || |||||||| ||||||||||||||| ||||||   |||||||| |||  |||| ||| ||||  | ||||    
T  6380085 ttgttgtgattctttcaatgaaatagacttccaaattgattgattaagtgattatacaaattaggggtggtttgataggatcagattcatgtacaaaaag 6380184  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  6380185 aagaactagagtctagaaaaaa 6380206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 302 - 384
Target Start/End: Complemental strand, 7370094 - 7370013
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||||||||||||| |||||||||||||||||||| | ||||| ||||||||||||||||||||  ||||||  ||||||||    
T  7370094 ctatgaaataggaggctcggttctatttttaaaata-gatctagtaaaatcaaaacgcaattcttcttgtgtaactaagcttc 7370013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 4100031 - 4099970
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||    
T  4100031 ttgttgtaattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaatt 4099970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 7636327 - 7636388
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||| ||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||    
T  7636327 ttgttgcgattctttcaatgaaatagcttttcaaattgactgattaagtaattatacaaatt 7636388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 46221704 - 46221765
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||||||    
T  46221704 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattctacaaatt 46221765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 549 - 660
Target Start/End: Complemental strand, 25061957 - 25061846
Alignment:
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactag 648  Q
    ||||||||||||||||| |||||||||| |||||| |||||||| | ||||||||   | |||| ||| ||||| ||||||||| | ||||  |||||||    
T  25061957 ttctttcaatgaaatagcttttcaaattaactgataaagtgattgtacaaattgagaatagtttgatagcatcagatttatgtccaaaaagaagaactag 25061858  T
Q  649 agtctagaaaaa 660  Q
    |||||| |||||    
T  25061857 agtctaaaaaaa 25061846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 638
Target Start/End: Original strand, 773885 - 773983
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaa 638  Q
    ||||||||||||||||||| |||||| ||||||||||||||||| |||| ||||| ||||||   |||| ||| ||| ||||| |||||| || |||||    
T  773885 ttgttgtgattctttcaataaaatagcttttcaaattgactgataaagtaattatacaaattaggggtgatttgatagcatcagatttatttccagaaa 773983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 594
Target Start/End: Original strand, 12251289 - 12251343
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  12251289 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaaatgattat 12251343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 11672649 - 11672588
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||| |||||||  ||| |||||||||||||||||||||||| ||||||    
T  11672649 ttgttgtgattctttcattgaaataactttccaaattgactgattaagtgattatacaaatt 11672588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 540 - 670
Target Start/End: Original strand, 8358295 - 8358426
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||| |||  |||| |||||||||||||||||||||||  |||||   |||||||| |||  |||  ||||||||  | ||||    
T  8358295 ttgttgtgattctttcaatgagataactttttaaattgactgattaagtgattatataaattaggggtggtttgataggatccgatttatgtacaaaaag 8358394  T
Q  640 tggaactagagtctaga-aaaaactcatacgt 670  Q
      |||||| |||||||| ||||||||| ||||    
T  8358395 gagaactaaagtctagagaaaaactcaaacgt 8358426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 675
Target Start/End: Original strand, 33419121 - 33419255
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgac-tgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtg 641  Q
    ||||||||||||||||||||||  ||||||||||||| | ||||||||||||| ||||||   ||| |||| |||  |||  ||||||||  | |||       
T  33419121 ttgtgattctttcaatgaaataacttttcaaattgacttaattaagtgattatacaaattaggggtagtttgataggatccgatttatgtacaaaaacaa 33419220  T
Q  642 gaactagagtctag-aaaaaactcatacgtgtatt 675  Q
    |||||||||||||| |||||||||| |||||||||    
T  33419221 gaactagagtctagaaaaaaactcaaacgtgtatt 33419255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 42161125 - 42161182
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||| ||| |||||| |||||| |||||||||| ||||||    
T  42161125 tgtgattctttcaatgaaatagctttccaaattaactgatcaagtgattatacaaatt 42161182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 40737760 - 40737816
Alignment:
Q  303 tatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgc 359  Q
    |||||||||||||| ||||||||||||||||||||| ||| || ||||| |||||||    
T  40737760 tatgaaataggaggctcggttctatttttaaaatagattcgagtaaaataaaaacgc 40737816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 454 - 529
Target Start/End: Original strand, 40841157 - 40841233
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    ||||||||| ||||| |||  |||||||| | |||||| || ||| |||||||||||||||||||||||||||||||    
T  40841157 gtgaaattttcctaatggtctcgtttggatttgtcacttctccgttgtaggaaaggggaaaacgaatggtttatgcg 40841233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 540 - 592
Target Start/End: Original strand, 44876156 - 44876208
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgatt 592  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||| |||||    
T  44876156 ttgttgtgattcttttaatgaaatagctttctaaattgactgattaaatgatt 44876208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 675
Target Start/End: Original strand, 41852302 - 41852434
Alignment:
Q  541 tgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagt 640  Q
    ||||| ||||||||||||||||||  | || ||||||||||| |||||||||||  || | ||  ||||||| ||| || || |||||  ||  |||||     
T  41852302 tgttgcgattctttcaatgaaataactctttaaattgactgagtaagtgattataaaattgga--gtggttttatagcaccatatttacatcctgaaagg 41852399  T
Q  641 ggaactagagtctagaaaaaactcatacgtgtatt 675  Q
     |||||| |||||||||||||| || |||||||||    
T  41852400 agaactaaagtctagaaaaaacccaaacgtgtatt 41852434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 36438117 - 36438194
Alignment:
Q  306 gaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||||||||| ||||||||||||||||||||||    || ||||| |||| |||||| ||| ||||||| ||||||||    
T  36438117 gaaataggaggctcggttctatttttaaaataggcctcagtaaaataaaaatgcaatt-tttgtgtgtagctaagcttc 36438194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 2e-63; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 449 - 676
Target Start/End: Complemental strand, 13997469 - 13997241
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||  ||   |||||||||||||||| ||||||||||||||||| |||||||||||||||||||            |||||||    
T  13997469 gagatgtgaaatttacctaaatgtgttgtttggaatgtcactcatacgtcgtaggaaaggg-aaaacgaatggtttatgcgaaaaagaaataattgttgt 13997371  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||| ||||    
T  13997370 gattctttcaatgaaatagtttttcaaattgactcattaagtgattattcaaattgacggtggttcaatagcatcaaatttatgtccagaaagtgaaact 13997271  T
Q  647 agagtctagaaaaaactcatacgtgtattg 676  Q
    ||||||||| ||||||||||||||||||||    
T  13997270 agagtctaggaaaaactcatacgtgtattg 13997241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 477 - 673
Target Start/End: Complemental strand, 39081525 - 39081328
Alignment:
Q  477 tttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-ttgttgtgattctttcaatgaaatagtttttcaaat 575  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||  |           ||||||| |||||||||||||||||| |||||||||    
T  39081525 tttggaatgtcactcctacgtcgtaggaaaggggaaaactaatggtttatatgaaaagaaataattgttgtaattctttcaatgaaatagcttttcaaat 39081426  T
Q  576 tgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 673  Q
    ||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||    
T  39081425 tgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtaaaactagagtctagaaaaaactcatacgtgta 39081328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 449 - 670
Target Start/End: Original strand, 29480545 - 29480768
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||| |||||||||||||  |||||||||||||||||||| |||||| |||||||||| || |||||||||||||            |||||||    
T  29480545 gagaggtgaactttacctaacggtgtcgtttggaatgtcactcctatgtcgtaagaaaggggaagacaaatggtttatgcgaaaaagaaataattgttgt 29480644  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||    
T  29480645 gattctttcaatgaaataatttttcaaattgactgaataagtgtttattcaaattgatggtggtttaatagcatcaaatttatgtccagaaagttgaact 29480744  T
Q  647 agagtctagaaaaaactcatacgt 670  Q
    | |||||| |||||| ||||||||    
T  29480745 aaagtctaaaaaaaaatcatacgt 29480768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 449 - 673
Target Start/End: Complemental strand, 1419065 - 1418840
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    ||||||||||||||||||||||||  | ||||||||||||||| |||||| |||||||||  |||| |||| |||||||||            |||||||    
T  1419065 gagaagtgaaatttacctaacggtgtcatttggaatgtcactcatacgtcataggaaaggaaaaaatgaatagtttatgcgaaaaagaaataattgttgt 1418966  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| ||||||| | ||||| |||||    
T  1418965 gattctttcaatgaaatagctttacaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaa-ttatgtctaaaaagtagaact 1418867  T
Q  647 agagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||||||||||||||||||    
T  1418866 agagtctagaaaaaactcatacgtgta 1418840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 457 - 669
Target Start/End: Original strand, 36059821 - 36060035
Alignment:
Q  457 aaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattcttt 554  Q
    |||||||| ||||||   ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||             |||||||| ||||||    
T  36059821 aaatttacgtaacggcgtcgtttggaatgtcactcatacgtcgtgggaaaagggaaaacgaatggtttatgcaaaaaagaaatgattgttgtggttcttt 36059920  T
Q  555 caatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtcta 654  Q
    ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||| | ||||| |||||||||||||    
T  36059921 caatgaaatagctttttaaattaactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttttgtctaaaaagtagaactagagtcta 36060020  T
Q  655 gaaaaaactcatacg 669  Q
    ||||||||| |||||    
T  36060021 gaaaaaacttatacg 36060035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 455 - 667
Target Start/End: Complemental strand, 38599551 - 38599338
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-ttgttgtgattctt 553  Q
    ||||||||||||||||||  |||||| |||| ||||| |||||||| ||||||||||||||||||||||||||             ||||| ||||||||    
T  38599551 tgaaatttacctaacggtgtcgtttgaaatgccactcatacgtcgtgggaaaggggaaaacgaatggtttatgaaaaaataaataattgttttgattctt 38599452  T
Q  554 tcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtct 653  Q
    ||||||||||||||||||||||||| ||||||||||||||| |||||||||  || ||| ||| |||||||||||| || | ||| | ||||| ||||      
T  38599451 tcaatgaaatagtttttcaaattgattgattaagtgattatacaaattgataatgatttgatagcatcaaatttatatccataaaatagaacttgagtta 38599352  T
Q  654 agaaaaaactcata 667  Q
    ||||||||||||||    
T  38599351 agaaaaaactcata 38599338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 19367420 - 19367554
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  19367420 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgatagaatccgatttatgtacaaaaag 19367519  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  19367520 gagaactagagtctagaaaaaaactcaaacgtgta 19367554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 285 - 384
Target Start/End: Complemental strand, 13997633 - 13997534
Alignment:
Q  285 catcagcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||    || ||||||||||||||||||||| ||||||| ||||||||    
T  13997633 catctgcaggaccgttcctatgaaataggaggctcggttctatttttaaaataggccacagtaaaatcaaaacgcaattctttttgtgtagctaagcttc 13997534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 15457563 - 15457430
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaaga-aa 638  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||  ||| |||| |||  | || |||||||||  || ||    
T  15457563 ttgttgtgattctttcaataaaatagcttttcaaattgactgattaagtgattatacaaattgggggtagtttgatagtaccagatttatgtccggataa 15457464  T
Q  639 gtggaactagagtctagaaaaaactcatacgtgta 673  Q
    || |||||| ||||||||||||||||| |||||||    
T  15457463 gt-gaactaaagtctagaaaaaactcaaacgtgta 15457430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 21747231 - 21747364
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| ||    
T  21747231 ttgttgtgattctttcaatgacatagtattttaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgttcagatag 21747330  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||||||||| |||| |||||||    
T  21747331 aagaactaaagtctagaaaaacctcaaacgtgta 21747364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 665
Target Start/End: Original strand, 27302529 - 27302654
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||| |||||||| |||| |||  || |||| ||||| |||| ||| ||    
T  27302529 ttgttgtgattcttttaatgatatagcttttcaaattgaccgattaagtgattatacaaattgagggtgatttggtagcatcgaatttttgtccagacag 27302628  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      ||| ||||||||||||||||||||    
T  27302629 aagaattagagtctagaaaaaactca 27302654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 38985710 - 38985842
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||  |||||||| |||  | |||||||||||| ||| ||    
T  38985710 ttgttgtgattctttcaatgaaatagcttttcaaattgattgattaaatgattatacaaattggaggtggtttgatagtaccaaatttatgtccagatag 38985809  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      ||| || ||| ||||||||||||| |||||||    
T  38985810 gagaa-taaagtttagaaaaaactcaaacgtgta 38985842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 41096539 - 41096660
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||   |||| ||| |||  |||  ||||||||  | ||||    
T  41096539 ttgttgtgattctttcaatgaaatagttttccaaattgactgattaagtgattatacaaattaggggtgatttgataggatctgatttatgtacaaaaag 41096638  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  41096639 gagaactagagtctagaaaaaa 41096660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 42411559 - 42411692
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| |||||||||| ||| |||||||||| ||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  42411559 ttgttgtgattctttaaatgaaatagctttccaaattgactaattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 42411658  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||||||||||||||||||||| |||||||    
T  42411659 gagaactagagtctagaaaaaactcaaacgtgta 42411692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 670
Target Start/End: Complemental strand, 2063868 - 2063738
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||   |||||||| |||  || | ||||||||  | ||||    
T  2063868 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattatacaaattaggggtggtttgataggattatatttatgtacaaaaag 2063769  T
Q  640 tggaactagagtctagaaaaaactcatacgt 670  Q
       |||||||||||| |||||||||| ||||    
T  2063768 gaaaactagagtctaaaaaaaactcaaacgt 2063738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 6530722 - 6530601
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | |||     
T  6530722 ttgttgtgattctttcaatgaaataccttttcaaattgactgattaagtgattatacaaattaggggtggtttgatagtatccgatttatgtacaaaaat 6530623  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  6530622 gagaactagagtctagaaaaaa 6530601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 665
Target Start/End: Complemental strand, 7993695 - 7993570
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||   |||||||| |||  |||   |||||||  | ||||    
T  7993695 ttgttgtgattctttcaatgaaatagctttccaaattggctgattaagtgattatacaaattaggggtggtttgataggatccggtttatgtacaaaaag 7993596  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      ||||||||||||||||||||||||    
T  7993595 gagaactagagtctagaaaaaactca 7993570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 34061857 - 34061990
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| || || ||||||   |||||||| |||  | || ||||||||  | ||||    
T  34061857 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtaatcatacaaattatgggtggtttgataggaccagatttatgtacaaaaag 34061956  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||| ||||||||||||||||||    
T  34061957 aagaactatagtctaaaaaaaactcatacgtgta 34061990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 541 - 665
Target Start/End: Original strand, 31273168 - 31273291
Alignment:
Q  541 tgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagt 640  Q
    |||| ||||||||| ||||||||||| || |||||||||||||||| ||||||| |||||||  |||||||| ||||||||||||||| ||| ||||||     
T  31273168 tgttatgattcttttaatgaaatagtattccaaattgactgattaaatgattatacaaattg-gggtggtttgataacatcaaatttaagtccagaaagg 31273266  T
Q  641 ggaactagagtctagaaaaaactca 665  Q
     || || |||| || ||||||||||    
T  31273267 agagctggagtatacaaaaaactca 31273291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 454 - 661
Target Start/End: Original strand, 26151658 - 26151870
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    |||||||||| ||||||||  |||||||| | |||||||||  || |||| |||||| |||||||||||||||||||          |   |||||||||    
T  26151658 gtgaaatttatctaacggtgtcgtttggatttgtcactcctctgttgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgat 26151757  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactag- 648  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  |||||||     
T  26151758 tctttcaatgaaatagctttccaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactaga 26151857  T
Q  649 agtctagaaaaaa 661  Q
    |||||||||||||    
T  26151858 agtctagaaaaaa 26151870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 13020486 - 13020365
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| |||    
T  13020486 ttgttgtgattctttaaatgaaatagctttccaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaa 13020387  T
Q  639 gtggaactagagtctagaaaaaa 661  Q
    |  ||||||||||||||||||||    
T  13020386 g-agaactagagtctagaaaaaa 13020365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 18676312 - 18676446
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| ||||||   ||| |||| |||  |||  ||||||||  | ||||    
T  18676312 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagttattatacaaattaggggtagtttgataggatccgatttatgtacaaaaag 18676411  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  18676412 gagaactagagtctagaaaaaaactcaaacgtgta 18676446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 45042455 - 45042331
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttca---aattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaaga 636  Q
    ||||||||||||||||||||||||||  |||||   |||||||||||||||||||||| ||||||   |||||||| |||  |||||||||||||    |    
T  45042455 ttgttgtgattctttcaatgaaatagactttcaccaaattgactgattaagtgattatacaaattaggggtggtttgataggatcaaatttatgtacgaa 45042356  T
Q  637 aagtggaactagagtctagaaaaaa 661  Q
    |||  ||||||||||||||||||||    
T  45042355 aagaagaactagagtctagaaaaaa 45042331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 18172941 - 18173073
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||   |||||||| |||  | || ||||||||| | | ||    
T  18172941 ttgttgtgattctttcgatgaaatagcttttcaaattgagtgattaagtgattatacaaattaggggtggtttgatagtaccagatttatgtccatatag 18173040  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      ||| || ||||||||||||||||| |||||||    
T  18173041 gagaa-taaagtctagaaaaaactcaaacgtgta 18173073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 544 - 673
Target Start/End: Original strand, 18916059 - 18916188
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtgga 643  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||||| |||||||  | |||||| |||  | || ||||||||| |||  |  ||    
T  18916059 tgtgattctttcagtgaaatagcttttcaaattgattgattaagtgattatacaaattggggatggtttgatagtaccagatttatgtccagattgaaga 18916158  T
Q  644 actagagtctagaaaaaactcatacgtgta 673  Q
    |||| |||||||||||| |||| |||||||    
T  18916159 actaaagtctagaaaaacctcaaacgtgta 18916188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 595 - 667
Target Start/End: Original strand, 32186206 - 32186278
Alignment:
Q  595 tcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcata 667  Q
    |||| ||||||||||||| ||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  32186206 tcaatttgatggtggtttgatagcatcaaatttatgtctaaaaagtagaactagagtctagaaaaaactcata 32186278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 455 - 527
Target Start/End: Complemental strand, 38599665 - 38599593
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatg 527  Q
    ||||||||||||||||||  |||||| |||| ||||| |||||||| ||||||||||||||||||||||||||    
T  38599665 tgaaatttacctaacggtgtcgtttgaaatgccactcatacgtcgtgggaaaggggaaaacgaatggtttatg 38599593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 39081704 - 39081617
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| | || ||||| |||||  |||| ||| ||||||||||||||||    
T  39081704 ccgttcctatgaaataggaggttcggttctatttttaaaataggtcccagtaaaataaaaacataatt-tttttgtgtagttaagcttc 39081617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 670
Target Start/End: Complemental strand, 45619039 - 45618909
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||  |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  45619039 ttgttgtgattctttcaatgaaatagcttc-caaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 45618941  T
Q  640 tggaactag-agtctagaaaaaactcatacgt 670  Q
      ||||||| ||||||||||||||||| ||||    
T  45618940 gagaactagaagtctagaaaaaactcaaacgt 45618909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 4856056 - 4855995
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  4856056 ttgttgtgattctttcaatgaaatagctttccaaattcactgattaagtgattatacaaatt 4855995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 1226267 - 1226399
Alignment:
Q  540 ttgttgtgattctttcaat-gaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaa 638  Q
    |||||||||||||||  || ||||||  ||||||||||| |||||| |||||||||  ||||||| ||||||||  || ||||| |||||||||   |||    
T  1226267 ttgttgtgattctttttattgaaataacttttcaaattgtctgattgagtgattatataaattgagggtggtttggtagcatcagatttatgtc--caaa 1226364  T
Q  639 gtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |  ||| |||||||||||||||||||| |||||||    
T  1226365 ggagaattagagtctagaaaaaactcaaacgtgta 1226399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 17117646 - 17117691
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgatta 585  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  17117646 ttgttgtgattctttcaatgaaatagcttttcaaattgactgatta 17117691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 25222386 - 25222325
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||  |||  ||||||||| ||||||||||||| ||||||    
T  25222386 ttgttgtgattctttcaatgaaataactttctaaattgactaattaagtgattatacaaatt 25222325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 1419207 - 1419172
Alignment:
Q  307 aaataggaggttcggttctatttttaaaataggttc 342  Q
    ||||||||||||||||||||||||||||||||||||    
T  1419207 aaataggaggttcggttctatttttaaaataggttc 1419172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 29480386 - 29480469
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgta 374  Q
    |||| ||||| |||||||||| |||| | ||||||||||||||||||||  |  | |||||||||| |||||||||| ||||||    
T  29480386 caggcccgttcctatgaaatatgaggcttggttctatttttaaaataggcccccgtaaaatcaaaatgcaattctttttgtgta 29480469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 540 - 632
Target Start/End: Original strand, 18482507 - 18482600
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttt-tcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtc 632  Q
    ||||||| |||||||||||||||||  | | | |||||||||||||||| |||||| |||||||  ||| ||||  || |||||||||||||||    
T  18482507 ttgttgttattctttcaatgaaataactgtgttaaattgactgattaagcgattatacaaattgggggtagtttgttagcatcaaatttatgtc 18482600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 540 - 585
Target Start/End: Original strand, 42759757 - 42759802
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgatta 585  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||    
T  42759757 ttgttgtgattctttcaatgaaataactttccaaattgactgatta 42759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 36059660 - 36059748
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||| |||  ||| |||||||||||||| | || ||||| ||||||||||| ||| | ||||| ||| ||||    
T  36059660 ccgttgctatgaaataggaggctcgactctttttttaaaataggtaccagtaaaataaaaacgcaattttttttttgtagctaaacttc 36059748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 1e-61; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 449 - 673
Target Start/End: Original strand, 35653888 - 35654114
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||| ||||||||  | |||| |||||||||||||||||||||||||||| ||||||||| |||||||||            |||||||    
T  35653888 gagaggtgaaatttatctaacggtgtcatttgaaatgtcactcctacgtcgtaggaaagggaaaaacgaatagtttatgcgaaaaagaaataattgttgt 35653987  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| ||||||||| ||||||| |||||    
T  35653988 gattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattgatggtggtttgatagcatcatatttatgtccagaaagtagaact 35654087  T
Q  647 agagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||||||||||||||||||    
T  35654088 agagtctagaaaaaactcatacgtgta 35654114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 454 - 673
Target Start/End: Complemental strand, 22423837 - 22423614
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn----ttgttgtgat 549  Q
    |||||||||| ||||||||  |||||||||||||||||||| |||||| |||| || |||||||||| |||||| ||             ||||| ||||    
T  22423837 gtgaaatttatctaacggtgtcgtttggaatgtcactcctatgtcgtatgaaatggaaaaacgaatgatttatgtggaaaaaataaataattgttttgat 22423738  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactaga 649  Q
    ||||||||| ||||||||||||||||||| |||||||||||| || ||||||||||||||||| ||| ||||||||||||||| ||||||| ||||||||    
T  22423737 tctttcaataaaatagtttttcaaattgattgattaagtgatcatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaactaga 22423638  T
Q  650 gtctagaaaaaactcatacgtgta 673  Q
    ||||||||||||||||||||||||    
T  22423637 gtctagaaaaaactcatacgtgta 22423614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 540 - 672
Target Start/End: Original strand, 43154789 - 43154921
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| |||||||||  |||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| | ||||    
T  43154789 ttgttgtgattcttttaatgaaataactttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccaaaaag 43154888  T
Q  640 tggaactagagtctagaaaaaactcatacgtgt 672  Q
    | |||||||| ||||||||||||||||||||||    
T  43154889 tagaactagaatctagaaaaaactcatacgtgt 43154921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 449 - 665
Target Start/End: Original strand, 21791456 - 21791673
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||||||||||||||  |  |||||||| |||||||| | |||||| |||||||||||| | |||||||||||||            |||||||    
T  21791456 gagaggtgaaatttacctaacaatgtcgtttggattgtcactcattcgtcgtgggaaaggggaaa-caaatggtttatgcgaaaaagaaatgattgttgt 21791554  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||| || ||||| |||||||| ||  ||||||||||||||  ||||||  |||||    
T  21791555 gattctttcaatgaaataacttttcaaattgactgattaagtgattatacacattgaaggtggtttgatggcatcaaatttatgttcagaaaggagaact 21791654  T
Q  647 agagtctagaaaaaactca 665  Q
    |||||||||||||||||||    
T  21791655 agagtctagaaaaaactca 21791673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 24449189 - 24449054
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg--gtggtttaataacatcaaatttatgtcaagaa 637  Q
    |||||||| ||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||   ||||||| ||| |||||||||||| || ||||    
T  24449189 ttgttgtggttctttctaagaaatagtttttcaaattgaccgattaagtgattatacaaattgatatagtggtttgatagcatcaaatttatatccagaa 24449090  T
Q  638 agtggaactagagtctagaaaaaactcatacgtgta 673  Q
    ||| ||||||||||||||||||||||||||||||||    
T  24449089 agtagaactagagtctagaaaaaactcatacgtgta 24449054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 454 - 671
Target Start/End: Complemental strand, 5545481 - 5545261
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgatt 550  Q
    |||||||||||||||||||  |||||| | | ||||||||| ||| ||  ||| |||||||||||||||||||||||            |||||||||||    
T  5545481 gtgaaatttacctaacggtgtcgtttgaatttgtcactcctccgttgtgagaagggggaaaacgaatggtttatgcgaaaaataaatgattgttgtgatt 5545382  T
Q  551 ctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagag 650  Q
    |||| |||||||||| ||| ||||||||| |||||||||||||| ||||||| ||||||||| ||  ||||||||||||||| ||| ||  ||| |||||    
T  5545381 cttttaatgaaatagctttccaaattgaccgattaagtgattatacaaattggtggtggtttgatggcatcaaatttatgtccagacagaagaattagag 5545282  T
Q  651 tctagaaaaaactcatacgtg 671  Q
    ||||||||||||||| |||||    
T  5545281 tctagaaaaaactcaaacgtg 5545261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 455 - 666
Target Start/End: Original strand, 10575437 - 10575647
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattct 552  Q
    |||||||||||| |||||  | || ||| |||||||||| |||||| ||||||||||||||||||||||||||||            ||||||||||| |    
T  10575437 tgaaatttacctgacggtgtcattcggattgtcactcctccgtcgtgggaaaggggaaaacgaatggtttatgcgaaaaagaaatgattgttgtgattat 10575536  T
Q  553 ttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtc 652  Q
    ||||||||||||  |||  ||||||||||||||||||||||| ||| |||| |||||||| ||| ||| |||||||||| || |||   ||||||||||     
T  10575537 ttcaatgaaataactttctaaattgactgattaagtgattatacaagttgagggtggtttgatagcataaaatttatgttaaaaaa---gaactagagtt 10575633  T
Q  653 tagaaaaaactcat 666  Q
    ||||||||||||||    
T  10575634 tagaaaaaactcat 10575647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 540 - 665
Target Start/End: Original strand, 32130791 - 32130916
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  32130791 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 32130890  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      ||||||| ||||||||||||||||    
T  32130891 aagaactagtgtctagaaaaaactca 32130916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 45172646 - 45172778
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||| | |||||||| |||  | || ||||||||| |||  |    
T  45172646 ttgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattatacaaatt-agggtggtttgatagtaccagatttatgtccagattg 45172744  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  45172745 gagaactaaagtctagaaaaaactcaaacgtgta 45172778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 19661442 - 19661309
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | |||     
T  19661442 ttgttgtgtttctttcaatgaaatagctttccaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaat 19661343  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||||||||||||||||||||| |||||||    
T  19661342 gagaactagagtctagaaaaaactcaaacgtgta 19661309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 23426167 - 23426288
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  23426167 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattatacaaattagaggtggtttgataggatccgatttatgtacaaaaag 23426266  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  23426267 gagaactagagtctagaaaaaa 23426288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 34982287 - 34982154
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||  | ||||||  ||  | || ||||||||| ||| ||    
T  34982287 ttgttgtgattctttcaacgaaatagtttttccaattgactgattaagtgattatacaaattggggatggtttgttagtaccagatttatgtccagatag 34982188  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
       ||||| ||||||||||||||||| |||||||    
T  34982187 aaaaactaaagtctagaaaaaactcaaacgtgta 34982154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 55134271 - 55134138
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| |     
T  55134271 ttgttgtgattctttctatgaaatagcttttcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagataa 55134172  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||| |||||||||| |||||||    
T  55134171 gagaactaaagtctacaaaaaactcaaacgtgta 55134138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 544 - 673
Target Start/End: Complemental strand, 27632457 - 27632327
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtgga 643  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||   |||||||| |||  |||||||||||||  | ||||  ||    
T  27632457 tgtgattctttcaatgaagtagcttttcaaattgactaattaagtgattatacaaattaggggtggtttgataggatcaaatttatgtacaaaaaggaga 27632358  T
Q  644 actagagtctagaa-aaaactcatacgtgta 673  Q
    |||||| ||||||| |||||||| |||||||    
T  27632357 actagaatctagaaaaaaactcaaacgtgta 27632327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 28463589 - 28463710
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||| |||||||||||||| ||||||| |||| ||||||||||||||| ||||||   |||||||| |||| |||  ||||||||  | ||||    
T  28463589 ttgttgtgattttttcaatgaaatagcttttcaacttgattgattaagtgattatacaaattaggggtggtttgataagatccgatttatgtacaaaaag 28463688  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  28463689 gagaactagagtctagaaaaaa 28463710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 41038313 - 41038252
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  41038313 ttgttgtgattctttcaatgaaatagttttccaaattgactgattaagtgattatacaaatt 41038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 53011775 - 53011642
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  53011775 ttgttgtgattcttttaatgaaatagctttccaaattgactgattaagtgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaag 53011676  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      ||| |||||| ||||||||||||| |||||||    
T  53011675 gagaattagagtttagaaaaaactcaaacgtgta 53011642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 540 - 660
Target Start/End: Complemental strand, 29579943 - 29579823
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||| |||||||| ||||||| |||||||||||| | ||||| ||||||   |||||||| |||  |||| ||||||||  | |||     
T  29579943 ttgttgtgattctttcattgaaatagcttttcaatttgactgattaattaattatacaaattatgggtggtttgataggatcagatttatgtacaaaaaa 29579844  T
Q  640 tggaactagagtctagaaaaa 660  Q
    | |||||||||||||||||||    
T  29579843 tagaactagagtctagaaaaa 29579823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 11681743 - 11681878
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||  |||||   |||||||| |||  |||  ||||||||  || |||    
T  11681743 ttgttgtgattctttcaatgaaataactttccaaattgactgattaagtgattataaaaattaggggtggtttgataggatccgatttatgtaaaaaaaa 11681842  T
Q  639 gtggaactagagtctag-aaaaaactcatacgtgta 673  Q
    |  |||||||||||||| |||||||||| |||||||    
T  11681843 ggagaactagagtctagaaaaaaactcaaacgtgta 11681878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 11690022 - 11690157
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||||||||||||  |||||   |||||||| |||  |||  ||||||||  || |||    
T  11690022 ttgttgtgattctttcaatgaaataactttccaaattgactgattaagtgattataaaaattaggggtggtttgataggatccgatttatgtaaaaaaaa 11690121  T
Q  639 gtggaactagagtctag-aaaaaactcatacgtgta 673  Q
    |  |||||||||||||| |||||||||| |||||||    
T  11690122 ggagaactagagtctagaaaaaaactcaaacgtgta 11690157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 44478102 - 44478041
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||    
T  44478102 ttgttgtgattctttcaatgaaatagctttccaaattgactgatttagtgattatacaaatt 44478041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 549 - 631
Target Start/End: Complemental strand, 16072648 - 16072566
Alignment:
Q  549 ttctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt 631  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||| ||||||   | |||||| |||  |||||||||||||    
T  16072648 ttctttcattgaaatagtttttcaaattgactgattaaatgattatacaaattagggatggtttgataggatcaaatttatgt 16072566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 665
Target Start/End: Complemental strand, 23256657 - 23256532
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||| |||||||| |||  |||||||||||||||||| |||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  23256657 ttgttgtgattctttcattgaaatagctttctaaattgactgattaagtggttatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 23256558  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      ||||| ||||||| ||||||||||    
T  23256557 gagaactggagtctaaaaaaaactca 23256532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 24449416 - 24449347
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgc 359  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||  || || ||||| |||||||    
T  24449416 gcagggccgttactatgaaataggaggttcggttctatttttaaaatagactcgagtaaaataaaaacgc 24449347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 29221622 - 29221743
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||| |||||||||||||  || ||||||||| | |||||||||||| |||||| |  ||||||| |||  |||| ||||||||  | |||     
T  29221622 ttgttgtgattccttcaatgaaatagacttccaaattgaccgtttaagtgattatacaaattaagagtggtttgataggatcagatttatgtacaaaaac 29221721  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||| ||||||||||||||||    
T  29221722 gagaattagagtctagaaaaaa 29221743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 35653735 - 35653823
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||| ||| |||||||||||||||| |||||  | || ||||| ||||| || || ||| ||||||||||||||||    
T  35653735 ccgttcctatgaaatagaaggctcggttctatttttaagataggcccgagtaaaataaaaacacatttttttgtgtgtagttaagcttc 35653823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 22423976 - 22423938
Alignment:
Q  302 ctatgaaataggaggttcggttctatttttaaaataggt 340  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  22423976 ctatgaaataggagtctcggttctatttttaaaataggt 22423938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 4e-59; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 449 - 673
Target Start/End: Original strand, 3628655 - 3628881
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||| ||  |||||||||||||||||||||||||||||||| || |||||||||||||||||||            |||||||    
T  3628655 gagaggtgaaatttacctaactgtgtcgtttggaatgtcactcctacgtcgtaggaaacggaaaaacgaatggtttatgcgaaaaagaaataattgttgt 3628754  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||  ||||||||||||||||||| |||||||| |||||| |||||||||| ||| ||||||||||||| | |||| || |||||    
T  3628755 gattctttcaatgaaataacttttcaaattgactgattatgtgattatacaaattaatggtggtttgatagcatcaaatttatgaccagaatgtagaact 3628854  T
Q  647 agagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||||||||||||||||||    
T  3628855 agagtctagaaaaaactcatacgtgta 3628881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 449 - 673
Target Start/End: Original strand, 32098085 - 32098312
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttg 545  Q
    |||||||||||||||| |||||||  |||||||| | |||||||||  || || |||| ||||||||||||||||||||||             ||||||    
T  32098085 gagaagtgaaatttacgtaacggtgtcgtttggattcgtcactcctctgttgtgggaatggggaaaacgaatggtttatgcaaaaaagaaataattgttg 32098184  T
Q  546 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaac 645  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| || |||||| |  ||||||| ||| ||||||||||||||| | ||||   |||    
T  32098185 tgattctttcaatgaaatagttttccaaattgactgattaagtgatcatacaaattaagagtggtttgatagcatcaaatttatgtccaaaaaggataac 32098284  T
Q  646 tagagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||||||||||| |||||||    
T  32098285 tagagtctagaaaaaactcaaacgtgta 32098312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 35874989 - 35874854
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatg--gtggtttaataacatcaaatttatgtcaagaa 637  Q
    |||||||| ||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||   ||||||| ||| |||||||||||| || ||||    
T  35874989 ttgttgtggttctttctaagaaatagtttttcaaattgaccgattaagtgattatacaaattgatatagtggtttgatagcatcaaatttatatccagaa 35874890  T
Q  638 agtggaactagagtctagaaaaaactcatacgtgta 673  Q
    ||| ||||||||||||||||||||||||||||||||    
T  35874889 agtagaactagagtctagaaaaaactcatacgtgta 35874854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 34523952 - 34524085
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||| ||| ||    
T  34523952 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtccagatag 34524051  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  34524052 gagaactaaagtctagaaaaaactcaaacgtgta 34524085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 39697939 - 39698072
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||| |||| || ||||||| ||||||||| |||  | |||||||||| ||||| ||    
T  39697939 ttgttgtgattctttcaatgaaatagcttttcaaattgactaattaaatgatcatacaaattggtggtggtttgatagtaccaaatttatgccaagatag 39698038  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  39698039 gagaactaaagtctagaaaaaactcaaacgtgta 39698072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 455 - 620
Target Start/End: Original strand, 36515069 - 36515229
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgc---ggnnnnnnnnnttgttgtgattc 551  Q
    ||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||| |||| |||||||   |          ||||||||||||    
T  36515069 tgaaatttatctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaatgggaaaacaaatgatttatgcgaagaaaaaaataattgttgtgattc 36515168  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacat 620  Q
    ||||||||||||||||||| ||        ||||| |||||||||||||||||||||||||||||||||    
T  36515169 tttcaatgaaatagttttttaa--------attaactgattattcaaattgatggtggtttaataacat 36515229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 665
Target Start/End: Original strand, 5869323 - 5869446
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |  |||||| ||||||||| |||  ||| |||||||||  ||||||    
T  5869323 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattttaaaaattg-tggtggtttgatagtatc-aatttatgtacagaaag 5869420  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      |||||| |||||| ||||||||||    
T  5869421 gagaactaaagtctaaaaaaaactca 5869446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 23567275 - 23567408
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||  |||||||| |||  | || ||||||||  ||| |     
T  23567275 ttgttgtgatactttcaatgaaatagtatttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtagcagatttatgttcagataa 23567374  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||||||||| |||| |||||||    
T  23567375 gagaactaaagtctagaaaaacctcaaacgtgta 23567408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 43926324 - 43926445
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||   |||||||| |||  |||  |||||| |  | ||||    
T  43926324 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtaattatacaaattatgggtggtttgataggatccgatttatatacaaaaag 43926423  T
Q  640 tggaactagagtctagaaaaaa 661  Q
    | ||||||||||||||||||||    
T  43926424 tagaactagagtctagaaaaaa 43926445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 540 - 631
Target Start/End: Complemental strand, 3471663 - 3471572
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt 631  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||| ||||||||    
T  3471663 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgatagaatcacatttatgt 3471572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 454 - 664
Target Start/End: Complemental strand, 42076260 - 42076046
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcgg----nnnnnnnnnttgttgtgat 549  Q
    |||||||||||||||||||  | ||||||||||||||||||| |||||| |||||||||||||||| ||||||||||             || || ||||    
T  42076260 gtgaaatttacctaacggtgtcatttggaatgtcactcctac-tcgtagaaaaggggaaaacgaatagtttatgcggaaaaaaataattattattatgat 42076162  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataac-atcaaatttatgtcaagaaagtggaactag 648  Q
    ||||||||||  |||| |||||||||||| ||||||||| ||||| |||||||||| | |||| ||| | |  ||||||||||  ||||||| ||| |||    
T  42076161 tctttcaatgttatagcttttcaaattgattgattaagttattatacaaattgatgatagtttgatagcaaaaaaatttatgttcagaaagtagaattag 42076062  T
Q  649 agtctagaaaaaactc 664  Q
    |||||| ||| |||||    
T  42076061 agtctaaaaagaactc 42076046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 18420610 - 18420744
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |  ||||||| |||  |||  ||||||||  | ||||    
T  18420610 ttgttgtgattctttcaatgaaacagcttttcaaattgactgattaagtgattatacaaattaagtgtggtttgataggatctgatttatgtacaaaaag 18420709  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||| | |||||||||| |||||||    
T  18420710 gagaactagagtctggaaaaaaactcaaacgtgta 18420744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 12531622 - 12531489
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||  ||| |||| |||  |  | ||||||||   || ||    
T  12531622 ttgttgtgattctttcaatgaaatagatttttaaattgactgattaagtgattatacaaattggaggtagtttgatagtacaagatttatgttcggatag 12531523  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  12531522 gagaactaaagtctagaaaaaactcaaacgtgta 12531489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 43968071 - 43968205
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||||    ||||||| |||  |||  ||||||||  | ||||    
T  43968071 ttgttgtgattctttcaatgaaataacttttcaaattgattgattaagtgattatacaaattaggagtggtttgataggatccgatttatgtacaaaaag 43968170  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  43968171 gagaactagagtctagaaaaaaactcaaacgtgta 43968205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 18112179 - 18112118
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||    
T  18112179 ttgttgtgattctttcaataaaatagttttccaaattgactgattaagtgattatacaaatt 18112118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 13585362 - 13585228
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||   |||||||| |||  |||  |||||||| ||| |||    
T  13585362 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaattgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaaa 13585263  T
Q  639 gtggaactagagtctag-aaaaaactcatacgtgta 673  Q
    |   ||||||||||||| |||||||||| |||||||    
T  13585262 g-aaaactagagtctagaaaaaaactcaaacgtgta 13585228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Complemental strand, 1004122 - 1004060
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagttttt-caaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  1004122 ttgttgtgattctttcaatgaaataattttttcaaattgactgattaagtgattatacaaatt 1004060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 30915288 - 30915410
Alignment:
Q  540 ttgttgtgattctttc-aatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaa 638  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||| || ||||  || |||||  || ||||| || |||||| |||||    
T  30915288 ttgttgtgattctttttaatgaaatagcttttcaaattgactgattaagtgattatacatattggaggaggtttggtagcatcagatctatgtccagaaa 30915387  T
Q  639 gtggaactagagtctagaaaaaa 661  Q
    |  ||| ||||||||| ||||||    
T  30915388 ggagaattagagtctaaaaaaaa 30915410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 540 - 631
Target Start/End: Complemental strand, 27074637 - 27074546
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt 631  Q
    ||||||||||| ||||||||||||||  ||| ||||||||||||||||||||||| ||||||   |||||||| |||  |||| ||||||||    
T  27074637 ttgttgtgattttttcaatgaaatagacttttaaattgactgattaagtgattatacaaattaggggtggtttgataggatcagatttatgt 27074546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 7858148 - 7858014
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| |||||| ||  ||| |||||||||||||||||||||||| ||||||   |||| ||| |||  |||  ||||||||  | ||||    
T  7858148 ttgttgtgattctttaaatgaattaactttccaaattgactgattaagtgattatacaaattaggggtgatttgataggatccgatttatgttcaaaaag 7858049  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  7858048 gagaactagagtctagaaaaaaactcaaacgtgta 7858014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 35875216 - 35875147
Alignment:
Q  290 gcaggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgc 359  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||  || || ||||| |||||||    
T  35875216 gcagggccgttactatgaaataggaggttcggttctatttttaaaatagactcgagtaaaataaaaacgc 35875147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 544 - 601
Target Start/End: Original strand, 42951774 - 42951831
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||| ||||||    
T  42951774 tgtgattctttcaataaaataacttttcaaattgactgattaagtgattatacaaatt 42951831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 44665047 - 44665168
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  ||| ||||| ||||||||||||||| || ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  44665047 ttgttgtgattctttcaatgaaataactttccaaatagactgattaagtgatgatacaaattagaggtggtttgataggatccgatttatgtacaaaaag 44665146  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||| ||||||    
T  44665147 gagaactagagtctataaaaaa 44665168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 454 - 602
Target Start/End: Complemental strand, 29372508 - 29372358
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgtgattc 551  Q
    ||||||||||||||| |||  |||||||| |||||||||| | |||| | ||||||||||| ||||||||||||||            ||||||| ||||    
T  29372508 gtgaaatttacctaatggtgtcgtttggattgtcactccttcatcgtggcaaaggggaaaatgaatggtttatgcgaaaaataaatgattgttgtcattc 29372409  T
Q  552 tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattg 602  Q
    |||||||  ||||  ||| |||||||||||||||| ||||||| |||||||    
T  29372408 tttcaattgaataactttccaaattgactgattaaatgattatacaaattg 29372358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 305 - 384
Target Start/End: Complemental strand, 42076408 - 42076330
Alignment:
Q  305 tgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||||| |||||||||||||||| ||||||||||  | | | |||||||||||||||||||| ||||||| ||||||||    
T  42076408 tgaaataagaggttcggttctattgttaaaataggcccca-gtaaatcaaaacgcaattctttttgtgtagataagcttc 42076330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 33453064 - 33453021
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaatagg 339  Q
    ||||| |||||||||||||||||| ||||| |||||||||||||    
T  33453064 ccgttcctatgaaataggaggttcagttctctttttaaaatagg 33453021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 305 - 351
Target Start/End: Complemental strand, 18112424 - 18112378
Alignment:
Q  305 tgaaataggaggttcggttctatttttaaaataggttctaggaaaat 351  Q
    ||||||||||||||||| ||| |||||||||||||| |||| |||||    
T  18112424 tgaaataggaggttcggctctctttttaaaataggtcctagtaaaat 18112378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 36514905 - 36514978
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattct 365  Q
    |||| ||||| ||||||||||||||||| |||| |||||||||| |||  |  || |||||||||||||||||||    
T  36514905 cagggccgttcctatgaaataggaggtttggtt-tatttttaaattagacttcagtaaaatcaaaacgcaattct 36514978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 1e-58; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 449 - 672
Target Start/End: Original strand, 42009170 - 42009395
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||| |||||| |  ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |            |||||||    
T  42009170 gagaggtgaaatttatctaacgatttcgtttggaatgtcactcttacgtcgtaggaaaggggaaaacgaatggtttatgtgaaaaagaaataattgttgt 42009269  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| ||||||| |||||    
T  42009270 gattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgtccagaaagtagaact 42009369  T
Q  647 agagtctagaaaaaactcatacgtgt 672  Q
    | |||||| |||||||||||||||||    
T  42009370 aaagtctaaaaaaaactcatacgtgt 42009395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 457 - 673
Target Start/End: Complemental strand, 51147085 - 51146867
Alignment:
Q  457 aaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg---gnnnnnnnnnttgttgtgattctt 553  Q
    ||||||||||||||||  |||||||||||||||| ||| ||||||| |||||| |||||||||||||||||||   |         ||||||||||||||    
T  51147085 aaatttacctaacggtgtcgtttggaatgtcacttctatgtcgtagaaaaggg-aaaacgaatggtttatgcgagagaaaaaataattgttgtgattctt 51146987  T
Q  554 tcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtct 653  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||||||||| |||    
T  51146986 tcaataaaatagttttttaaattgactgattaagtgat-attcaaattgatggtggtttaatagcatcaaatttatgtccaaaaagtggaactagaatct 51146888  T
Q  654 agaa-aaaactcatacgtgta 673  Q
    |||| ||||||||||||||||    
T  51146887 agaaaaaaactcatacgtgta 51146867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 475 - 673
Target Start/End: Original strand, 36538120 - 36538320
Alignment:
Q  475 cgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattctttcaatgaaatagtttttca 572  Q
    ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||    
T  36538120 cgtttagaatgtcactcctgcttcgtaggaaaggggaaaacgaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagtttttca 36538219  T
Q  573 aattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgt 672  Q
    |||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||||| | |||||  ||||||||| ||||||||||||||||||||    
T  36538220 aattgactgattaagtgattatacaaattgatggtggtttgatagcatcaagtttatgtccataaagtataactagagtttagaaaaaactcatacgtgt 36538319  T
Q  673 a 673  Q
    |    
T  36538320 a 36538320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 455 - 672
Target Start/End: Original strand, 50677228 - 50677447
Alignment:
Q  455 tgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgtgattct 552  Q
    ||||||||| ||||| ||  ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||            ||||||||||| |    
T  50677228 tgaaatttatctaacagtttcgtttggaatgtcactcctacatcgtaggaaaggggaaaacgaattgtttatgcgaaaaagaaataattgttgtgattgt 50677327  T
Q  553 ttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtc 652  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |||| |||||||  ||||| ||||    
T  50677328 ttcaatgaaatagtttttcaaattgactgattaagtgattatacaaattgatggtggtttgataacaacaaatttttgtccagaaagtataactaaagtc 50677427  T
Q  653 tagaaaaaactcatacgtgt 672  Q
    ||| |||||| |||| ||||    
T  50677428 taggaaaaacccatatgtgt 50677447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 449 - 673
Target Start/End: Complemental strand, 7767222 - 7766991
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-----ttgt 543  Q
    |||| |||||||||||||||| ||  | |||||||||||||||||||||| ||||||| |||||||||||| ||||||| |               ||||    
T  7767222 gagatgtgaaatttacctaactgtgtcatttggaatgtcactcctacgtcttaggaaatgggaaaacgaatagtttatgtgaagaaaaaaaaataattgt 7767123  T
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtgga 643  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||| ||||||| ||    
T  7767122 tgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatggttgtttgatagcatcaaatttatgtccagaaagtaga 7767023  T
Q  644 actagagtctagaa--aaaactcatacgtgta 673  Q
    ||| ||||||||||  ||||||||||||||||    
T  7767022 actggagtctagaaaaaaaactcatacgtgta 7766991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 449 - 672
Target Start/End: Complemental strand, 27303341 - 27303118
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||||||| ||||| ||| |||||||||            |||||||    
T  27303341 gagaggtgaaatttacctaatggtgtcgtttg-aatgtcactcctacgtcgtaggaaaggg-aaaacaaatagtttatgcgaaaaagaaataattgttgt 27303244  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| ||  ||||||||||||||| | ||||| ||| |    
T  27303243 gattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattgatggtggtttcatggcatcaaatttatgtccataaagtagaagt 27303144  T
Q  647 agagtctagaaaaaactcatacgtgt 672  Q
    |||||||||||||||| |||||||||    
T  27303143 agagtctagaaaaaacacatacgtgt 27303118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 449 - 673
Target Start/End: Complemental strand, 46904898 - 46904662
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||  || |||||||||             |||||||    
T  46904898 gagaggtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtaggaaagggaaaaataaaaggtttatgcaaaaaagaaataattgttgt 46904799  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaattt----------atgtcaaga 636  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |          ||||| |||    
T  46904798 gattctttcaatgaaatagttttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatctatgtccagaaatgtctaga 46904699  T
Q  637 aagtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  46904698 aagtagaactagagtctagaaaaaactcatacatgta 46904662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 48627030 - 48627163
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||  |||||| | |||  |||| ||||||||| ||| |     
T  48627030 ttgttgtgattctttcaatgaaatagattttcaaattgactgatcaagtgattatacaaattggcggtggtctgatagtatcagatttatgtccagatat 48627129  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  48627130 gagaactaaagtctagaaaaaactcaaacgtgta 48627163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 540 - 671
Target Start/End: Original strand, 51939557 - 51939688
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| |||    
T  51939557 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaaa 51939656  T
Q  639 gtggaactagagtctagaaaaaactcatacgtg 671  Q
    |  |||||||||||||||||||||||| |||||    
T  51939657 g-agaactagagtctagaaaaaactcaaacgtg 51939688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 41707056 - 41707190
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  41707056 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatgcaaattaggggtggtttgataggatccgatttatgtacaaaaag 41707155  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  41707156 gagaactagagtctagaaaaaaactcaaacgtgta 41707190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 21784785 - 21784918
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  21784785 ttgttgtgattctttcaatgaaatagctttccaaattaactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 21784884  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||||||||||||||||||||| |||||||    
T  21784885 gagaactagagtctagaaaaaactcaaacgtgta 21784918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 23164573 - 23164706
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||||||||  || |||||||| ||||||||||||||| ||||||   |||||||| |||  |||| ||||||||  | ||||    
T  23164573 ttgttgtgattctttcaatgaaatagacttccaaattgattgattaagtgattatacaaattaggggtggtttgataggatcagatttatgtacaaaaag 23164672  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||||||||||||||||||||| |||||||    
T  23164673 gagaactagagtctagaaaaaactcaaacgtgta 23164706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 25599087 - 25599208
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||| |||  |||| ||||||||  | ||||    
T  25599087 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattatataaattagaggtggtttgatagaatcagatttatgtacaaaaag 25599186  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||| ||||||    
T  25599187 gagaactagagtctaaaaaaaa 25599208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 548 - 673
Target Start/End: Complemental strand, 54430607 - 54430482
Alignment:
Q  548 attctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaacta 647  Q
    ||||||| |||||||||  |||||||||||||||||||||||||||| ||||||   |||||||| ||||||||| ||||||||  | ||||  ||||||    
T  54430607 attcttttaatgaaataacttttcaaattgactgattaagtgattatacaaattaggggtggtttgataacatcagatttatgtacaaaaaggagaacta 54430508  T
Q  648 gagtctagaaaaaactcatacgtgta 673  Q
    ||| |||||||||||||| |||||||    
T  54430507 gagcctagaaaaaactcaaacgtgta 54430482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 46791698 - 46791832
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  46791698 ttgttgtgattcttgcaatgaaatagttttccaaattgactgattaagtgattatacaaattagaggtggtttgataggatccgatttatgtacaaaaag 46791797  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  46791798 gagaactagagtctagaaaaaaactcaaacgtgta 46791832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 672
Target Start/End: Original strand, 52655034 - 52655257
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    |||||||||| ||||||||| |||||| | | |||||||||| || || | |||||| |||||||||||||||||||          |   |||||||||    
T  52655034 gtgaaatttatctaacggtatcgtttgaatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcgaggaaaaaaatgattgttgtgat 52655133  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactaga 649  Q
    |||||||||||||||| ||| |||||||||||||||||||||||| ||||||  ||||||||| |||  |||  |||||| |  | ||||  ||||||||    
T  52655134 tctttcaatgaaatagctttccaaattgactgattaagtgattatacaaattagtggtggtttgataggatccgatttatatacaaaaaggagaactaga 52655233  T
Q  650 gtctaga-aaaaactcatacgtgt 672  Q
    ||||||| ||||||||| ||||||    
T  52655234 gtctagagaaaaactcaaacgtgt 52655257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 21596398 - 21596265
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||  |||||||||| ||| ||||| |||||||||||||||||| |||||||   ||||||| ||| ||||  ||||||||| ||||||    
T  21596398 ttgttgtgattcttgtaatgaaatagctttccaaatcgactgattaagtgattatacaaattgggagtggtttgatagcatctgatttatgtccagaaag 21596299  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      ||| ||||||||||||||||| || |||||||    
T  21596298 gagaattagagtctagaaaaaacgcaaacgtgta 21596265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 28132736 - 28132857
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||| | |||| ||| |||  |||  ||||||||  | ||||    
T  28132736 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattatacaaattaagggtgatttgataggatctgatttatgtacaaaaag 28132835  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  28132836 gagaactagagtctagaaaaaa 28132857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 13401522 - 13401401
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||| |  ||||||| |||  ||| ||| |||||  | ||||    
T  13401522 ttgttgtgattcttccaatgaaatagcttttcaaattgactgattaagtgattatacaaattaagagtggtttgataggatcgaatgtatgtacaaaaag 13401423  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      |||||||||| |||||||||    
T  13401422 gagaactagagtttagaaaaaa 13401401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 18408254 - 18408121
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | |||     
T  18408254 ttgttgtgattctttcaatggattagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaat 18408155  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| ||||||||||||||||| |||||||    
T  18408154 gagaactaaagtctagaaaaaactcaaacgtgta 18408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 8364235 - 8364101
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  8364235 ttgttgtgattctttcaatgaaataactttccaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 8364136  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||| ||||||||| |||||||||| |||||||    
T  8364135 gagaacaagagtctagaaaaaaactcaaacgtgta 8364101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 29387755 - 29387889
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  29387755 ttgttgtgattctttcaatgaaataacttttcaaattgattgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 29387854  T
Q  640 tggaactagagtct-agaaaaaactcatacgtgta 673  Q
      |||||||||||| | |||||||||| |||||||    
T  29387855 gagaactagagtctaaaaaaaaactcaaacgtgta 29387889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 40152130 - 40152264
Alignment:
Q  540 ttgttgtgattc-tttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaa 638  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||  | || |||  || ||||| || |||||| | |||    
T  40152130 ttgttgtgattcgttttaatgaaatagtttttcaaattgaccgattaagtgattatacaaattggggatgatttggtagcatcagatctatgtctaaaaa 40152229  T
Q  639 gtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |  ||| ||||||||| |||||||||| |||||||    
T  40152230 gaagaattagagtctaaaaaaaactcaaacgtgta 40152264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 46905051 - 46904963
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||  ||||| ||| |||||||  |||||||    
T  46905051 ccgttcctatgaaataggaggctcggttctatttttaaaataggttccagtaaaataaaaattcaattttttatgtgtagcgaagcttc 46904963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 543 - 632
Target Start/End: Original strand, 19965884 - 19965973
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtc 632  Q
    |||||||||||| |||||||||| ||||||| || ||| ||||||||||||| |||||||   ||||||| ||| ||||| |||||||||    
T  19965884 ttgtgattcttttaatgaaatagcttttcaatttaactaattaagtgattatacaaattggcagtggtttgatagcatcagatttatgtc 19965973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 661
Target Start/End: Complemental strand, 24252683 - 24252563
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||| || |||||||  ||| |||||||||||||||||||||||| |||||| | |||||||| |||  |||  | ||||||  | ||||    
T  24252683 ttgttgtgattcttgcactgaaataactttccaaattgactgattaagtgattatacaaattaagggtggtttgataggatctga-ttatgtacaaaaag 24252585  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  24252584 aagaactagagtctagaaaaaa 24252563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 356
Target Start/End: Complemental strand, 27303501 - 27303436
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaa 356  Q
    |||| ||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||| ||||    
T  27303501 cagggccgttccaatgaaataggaggctcggttctatttttaaaataggttctagtaaaataaaaa 27303436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 551 - 663
Target Start/End: Original strand, 1649843 - 1649955
Alignment:
Q  551 ctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagag 650  Q
    |||||| |||||||| |||||||||||| ||||||||||||||| |||||||  |||| ||| ||| || || ||||||||| |||||   ||||||||     
T  1649843 ctttcagtgaaatagattttcaaattgaatgattaagtgattatacaaattgggggtgatttgatagcaccagatttatgtctagaaaagagaactagat 1649942  T
Q  651 tctagaaaaaact 663  Q
    | |||| ||||||    
T  1649943 tttagacaaaact 1649955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 296 - 384
Target Start/End: Complemental strand, 7767375 - 7767287
Alignment:
Q  296 ccgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||  | || || || |||||||| || ||| ||||||| ||||||||    
T  7767375 ccgttcctatgaaataggaggctcggttctatttttaaaataggcccaagtaagataaaaacgcatttttttgtgtgtagctaagcttc 7767287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 558 - 674
Target Start/End: Original strand, 43905862 - 43905978
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaa 657  Q
    |||||||  |||||||||||||||||| ||||||||| |||||||| ||| |||| |||  | || ||||||||| ||| ||  |||||| |||||| ||    
T  43905862 tgaaataacttttcaaattgactgattgagtgattatacaaattgagggtagtttgatagtaccagatttatgtccagataggagaactaaagtctaaaa 43905961  T
Q  658 aaaactcatacgtgtat 674  Q
    ||| |||| ||||||||    
T  43905962 aaacctcaaacgtgtat 43905978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 27729770 - 27729904
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||| || |||| | ||| |||||||| |||||| |||||||| ||||||   |||||||| |||| |||  ||||||||  | ||||    
T  27729770 ttgttgtgattctttcgatcaaattgctttccaaattgattgattatgtgattatacaaattaggggtggtttgataagatccgatttatgtacaaaaag 27729869  T
Q  640 tggaactagagtcta-gaaaaaactcatacgtgta 673  Q
      |||||||||||||  |||||||||| |||||||    
T  27729870 gagaactagagtctacaaaaaaactcaaacgtgta 27729904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 544 - 661
Target Start/End: Original strand, 23067730 - 23067847
Alignment:
Q  544 tgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtgga 643  Q
    ||||||||||| |||||||||  ||||||||||||||| | |||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||  ||    
T  23067730 tgtgattctttaaatgaaataacttttcaaattgactggtgaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggaga 23067829  T
Q  644 actagagtctagaaaaaa 661  Q
    |||| |||||||||||||    
T  23067830 actaaagtctagaaaaaa 23067847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 297 - 384
Target Start/End: Original strand, 42009039 - 42009126
Alignment:
Q  297 cgtttctatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgcaattctttctgtgtagttaagcttc 384  Q
    |||| |||||||||| ||||||||||||||||||||||||| | |  || ||||| ||||  ||| | ||| ||||||||||||||||    
T  42009039 cgttcctatgaaatatgaggttcggttctatttttaaaataagcttcagtaaaataaaaatacaaatttttttgtgtagttaagcttc 42009126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 51147252 - 51147205
Alignment:
Q  291 caggaccgtttctatgaaataggaggttcggttctatttttaaaatag 338  Q
    |||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  51147252 cagggccgttcctatgaaataggaggctcggttctatttttaaaatag 51147205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 546 - 632
Target Start/End: Original strand, 1255057 - 1255143
Alignment:
Q  546 tgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtc 632  Q
    |||||||||||||||||||  |||  |||||||| |||||||| ||||| |||||| | ||| |||| ||| ||||| |||||||||    
T  1255057 tgattctttcaatgaaataactttctaaattgaccgattaagtcattatacaaattaaaggtcgtttgatagcatcagatttatgtc 1255143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 540 - 600
Target Start/End: Complemental strand, 20762112 - 20762052
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaat 600  Q
    ||||| ||||||||||||||||||||  || |||||| |||||| |||||||||| |||||    
T  20762112 ttgttatgattctttcaatgaaatagacttccaaattaactgatcaagtgattatacaaat 20762052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 15987321 - 15987276
Alignment:
Q  484 tgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    |||||||||| ||| || |||||||| |||||||||||||||||||    
T  15987321 tgtcactcctccgttgtgggaaagggaaaaacgaatggtttatgcg 15987276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 449 - 661
Target Start/End: Original strand, 3748476 - 3748690
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| |||||||||||||||||||  | ||||||||||||||||||||||| | ||||||||||||||||| ||||||| |            |||||||    
T  3748476 gagatgtgaaatttacctaacggtgtcatttggaatgtcactcctacgtcgcatgaaaggggaaaacgaatagtttatgtgacaaagaaataattgttgt 3748575  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaact 646  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||| ||||| ||| ||||||||||||||| | ||||| |||||    
T  3748576 gattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattgatggcggtttgatagcatcaaatttatgtccaaaaagtagaact 3748675  T
Q  647 agagtctagaaaaaa 661  Q
    ||| |||| ||||||    
T  3748676 agaatctaaaaaaaa 3748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 457 - 661
Target Start/End: Original strand, 30915277 - 30915488
Alignment:
Q  457 aaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn-------ttgttgtgat 549  Q
    |||||||| |||||||  |||||| ||||||||| |||||||||| ||||||||| || ||||||||||||||                 ||||||||||    
T  30915277 aaatttacataacggtgtcgtttgaaatgtcacttctacgtcgtaagaaaggggataatgaatggtttatgcgaaaaattaaagaaatgattgttgtgat 30915376  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactaga 649  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||| ||||||| ||||||||    
T  30915377 tctttcaattaaatagcttttcaaattgactgattaagtaattatacaaattgatgggggtttgatagcatcaaatttatgtccagaaagtagaactaga 30915476  T
Q  650 gtctagaaaaaa 661  Q
    ||||||||||||    
T  30915477 gtctagaaaaaa 30915488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 584 - 673
Target Start/End: Complemental strand, 7341228 - 7341139
Alignment:
Q  584 taagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||    
T  7341228 taagtgattattcaaattgacggtggtttaataacatcaaatttatgtccagaaagtggaactagagtctagaaaaaactcatatgtgta 7341139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 12614717 - 12614850
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  12614717 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaag 12614816  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      ||||||||||||| |||||||||| |||||||    
T  12614817 gagaactagagtctaaaaaaaactcaaacgtgta 12614850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 2618418 - 2618285
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  |||||||| ||| |||    
T  2618418 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaa 2618319  T
Q  639 gtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |  |||||| ||||||||||||||||| |||||||    
T  2618318 g-agaactaaagtctagaaaaaactcaaacgtgta 2618285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 449 - 578
Target Start/End: Complemental strand, 6294410 - 6294279
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg--gnnnnnnnnnttgttgt 546  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||| |||||||||            |||||||    
T  6294410 gagaggtgaaatttacctaacggtgtcgtttggaatgtcactcctacgtcgtgggaaaggggaaaacgaatagtttatgcgaaaaagaaatgattgttgt 6294311  T
Q  547 gattctttcaatgaaatagtttttcaaattga 578  Q
    ||||||||||||||||| | ||||||||||||    
T  6294310 gattctttcaatgaaattgcttttcaaattga 6294279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 540 - 659
Target Start/End: Original strand, 628096 - 628215
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||| |||  |||| |||  | ||||    
T  628096 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgataagatctgatttgtgtacaaaaag 628195  T
Q  640 tggaactagagtctagaaaa 659  Q
      ||||||||||||||||||    
T  628196 gtgaactagagtctagaaaa 628215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 6360822 - 6360690
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    |||||||||||||||||||||| ||  |||||||||||||||||||||||||||| |||||| | |||||||| |||  |||  |||||||| ||| |||    
T  6360822 ttgttgtgattctttcaatgaa-taacttttcaaattgactgattaagtgattatacaaattaagggtggtttgataggatccgatttatgtgcaaaaaa 6360724  T
Q  639 gtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |  |||||||||||||||||||||||| |||||||    
T  6360723 g-agaactagagtctagaaaaaactcaaacgtgta 6360690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 29308468 - 29308601
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| ||    
T  29308468 ttgttgtgattacttcaatgaaatagtttttcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagatag 29308567  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
       ||||| ||| ||||||||||||| |||||||    
T  29308568 aaaaactaaagtttagaaaaaactcaaacgtgta 29308601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 31861064 - 31860933
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||  |||||||| || | | || ||||||||| ||| ||    
T  31861064 ttgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtaattatacaaattg-gggtggtttgat-ataccagatttatgtccagatag 31860967  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| |||||||||||| |||| |||||||    
T  31860966 aagaactaaagtctagaaaaacctcaaacgtgta 31860933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 540 - 672
Target Start/End: Complemental strand, 19231675 - 19231544
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||| ||||||||  |||| |||||||||||| |||||||||||| || |||||||| ||| |||| ||| || || ||||||||| ||||||    
T  19231675 ttgttgtgattttttcaatgtcatagcttttcaaattgattgattaagtgat-atacaaattgaaggtagtttgatagcaccagatttatgtccagaaag 19231577  T
Q  640 tggaactagagtctagaaaaaactcatacgtgt 672  Q
    | |||||| | ||||||||||||||| ||||||    
T  19231576 tagaactaaactctagaaaaaactcaaacgtgt 19231544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 1690634 - 1690767
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    |||||||||||||||||||||||||  |||||||||||| |||| |||||||||| ||||||| ||||||||| |||  | || ||||||||| | | ||    
T  1690634 ttgttgtgattctttcaatgaaataaattttcaaattgattgatcaagtgattatacaaattggtggtggtttgatagtaccagatttatgtccaaatag 1690733  T
Q  640 tggaactagagtctagaaaaaactcatacgtgta 673  Q
      |||||| | | ||||||||||||| |||||||    
T  1690734 gagaactaaaatttagaaaaaactcaaacgtgta 1690767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 665
Target Start/End: Original strand, 1093042 - 1093166
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||| ||| ||||| | ||||| | ||||||| |||  | |||||||||||| ||| ||    
T  1093042 ttgttgtgattctttca-tgaaatagctttttaaattgactgatttagtcattataccaattggtagtggtttgatagtaccaaatttatgtccagatag 1093140  T
Q  640 tggaactagagtctagaaaaaactca 665  Q
      |||||| |||||||||||||||||    
T  1093141 gagaactaaagtctagaaaaaactca 1093166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 449 - 601
Target Start/End: Complemental strand, 21946261 - 21946109
Alignment:
Q  449 gagaagtgaaatttacctaacggtaccgtttggaatgtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnn--ttgttgt 546  Q
    |||| ||| |||||||||||||||  |||||| |||||||||| ||||| ||||||||| ||||||||||| |||||||||            ||||| |    
T  21946261 gagaggtggaatttacctaacggtgtcgtttg-aatgtcactcttacgt-gtaggaaagaggaaaacgaattgtttatgcgaaaaagaaataattgttat 21946164  T
Q  547 gattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    | ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||    
T  21946163 ggttctttcaatgaaatagcttttcaaatagactgattaagtgattatacaaatt 21946109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 594 - 673
Target Start/End: Complemental strand, 6294288 - 6294209
Alignment:
Q  594 ttcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtctagaaaaaactcatacgtgta 673  Q
    |||||||||||| |||||| ||| ||||||||||||| | | ||||| ||||||||||||||||||||||||||| ||||    
T  6294288 ttcaaattgatgatggtttgatagcatcaaatttatgcccaaaaagtagaactagagtctagaaaaaactcatacatgta 6294209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 540 - 639
Target Start/End: Original strand, 14893418 - 14893517
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||||| |  || |||| ||| ||||| |||||| || ||||||    
T  14893418 ttgttgtgattcttttaacgaaatagtttttcaaattgactgattaagtaattatacaaattcagagttgtttgatagcatcagatttatatctagaaag 14893517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 673
Target Start/End: Complemental strand, 57751 - 57617
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||| |||||||||| |||  ||||||||||||||||||||||| ||||||   |||||||| |||  |||| ||||||||  | ||||    
T  57751 ttgttgtgattctttgaatgaaatagctttctaaattgactgattaagtgattatacaaattatgggtggtttgataggatcagatttatgtacaaaaag 57652  T
Q  640 tggaactagagtct-agaaaaaactcatacgtgta 673  Q
      |||||||||| | | |||||||||| |||||||    
T  57651 gagaactagagtttaaaaaaaaactcaaacgtgta 57617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 665
Target Start/End: Complemental strand, 6754269 - 6754144
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgt-caagaaa 638  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||   | |||||| |||  |||  |||||||| ||| |||    
T  6754269 ttgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgactatacaaattagggatggtttgataggatccgatttatgtacaaaaaa 6754170  T
Q  639 gtggaactagagtctagaaaaaactca 665  Q
    |  |||||||| |||||||||||||||    
T  6754169 g-agaactagaatctagaaaaaactca 6754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 7525167 - 7525301
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||| |||||  ||| |||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | || |    
T  7525167 ttgttgtgattctttcaataaaataactttccaaattgactgattaagtgattatacaaattatgggtggtttgataggatccgatttatgtacaaaatg 7525266  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||||||| |||||||||| |||||||    
T  7525267 gagaactagagtctagaaaaaaactcaaacgtgta 7525301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 454 - 661
Target Start/End: Complemental strand, 29149556 - 29149345
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcggnnnnnnnnnt---tgttgtgat 549  Q
    ||||||||||| |||||||| |||||||| | |||||||||  || || | |||||| |||||||||||||||||||          |   |||||||||    
T  29149556 gtgaaatttacgtaacggtatcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgat 29149457  T
Q  550 tctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactaga 649  Q
    |||||||||||| ||  ||| |||||||||||||||||||||||| ||||||    ||||||| |||  |||  ||||||||  | ||||  ||||||||    
T  29149456 tctttcaatgaactaactttccaaattgactgattaagtgattatacaaattaggtgtggtttgataggatccgatttatgtacaaaaaggagaactaga 29149357  T
Q  650 gtctagaaaaaa 661  Q
    ||||||||||||    
T  29149356 gtctagaaaaaa 29149345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 540 - 594
Target Start/End: Complemental strand, 29401203 - 29401149
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  29401203 ttgttgtgattctttcaatgaaataacttttcaaattgactgattaagtgattat 29401149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 540 - 673
Target Start/End: Original strand, 3514851 - 3514985
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||||||||||||| |||| ||| |||||||| |||||| |||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||    
T  3514851 ttgttgtgattctttcaatgatatagctttccaaattgaatgattacgtgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaag 3514950  T
Q  640 tggaactagagtctag-aaaaaactcatacgtgta 673  Q
      |||||||||| ||| |||||||||| |||||||    
T  3514951 gagaactagagtttagaaaaaaactcaaacgtgta 3514985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 548 - 594
Target Start/End: Complemental strand, 22503798 - 22503752
Alignment:
Q  548 attctttcaatgaaatagtttttcaaattgactgattaagtgattat 594  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  22503798 attctttcaacgaaatagtttttcaaattgactgattaagtgattat 22503752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 540 - 632
Target Start/End: Complemental strand, 350478 - 350385
Alignment:
Q  540 ttgttgtgattctttcaat-gaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtc 632  Q
    |||||||||||||||  || ||||||| |||  ||||||||||||| |||||||||  |||||||||||||||| ||| ||||| |||||||||    
T  350478 ttgttgtgattctttttattgaaatagctttcgaaattgactgattgagtgattatataaattgatggtggtttgatagcatcatatttatgtc 350385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 3748329 - 3748411
Alignment:
Q  303 tatgaaataggaggttcggttctatttttaaaataggttctaggaaaatcaaaacgca-attctttctgtgtagttaagcttc 384  Q
    |||||||||||||| ||||||||||||||||||||||| | || ||||| |||| |||  || ||| ||||||| ||||||||    
T  3748329 tatgaaataggaggctcggttctatttttaaaataggtccgagtaaaataaaaatgcattttttttgtgtgtagctaagcttc 3748411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 654
Target Start/End: Complemental strand, 31234956 - 31234862
Alignment:
Q  558 tgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtggaactagagtcta 654  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||  | |||||| ||| |||  ||||  |||| | ||||| |||||||||||||    
T  31234956 tgaaatagcttttcaaattgattgattaagtgattatacaaattg--gatggtttgatagcattgaattcttgtctaaaaagtagaactagagtcta 31234862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 542 - 673
Target Start/End: Complemental strand, 16771 - 16639
Alignment:
Q  542 gttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtg 641  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||   |||||||| |||  |||  ||||||||  | ||||      
T  16771 gttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaagga 16672  T
Q  642 gaactagagtctag-aaaaaactcatacgtgta 673  Q
    |||||||||||||| |||||||||| |||||||    
T  16671 gaactagagtctagaaaaaaactcaaacgtgta 16639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 543 - 665
Target Start/End: Original strand, 8399 - 8521
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaagtgg 642  Q
    |||||||||||||||||||||||||||  ||||||||||||||| ||||||| ||||||   |||||||| ||| ||| |  |||||||| ||||||       
T  8399 ttgtgattctttcaatgaaatagttttcgaaattgactgattaattgattatacaaattatgggtggtttgatagcataaggtttatgtccagaaaggaa 8498  T
Q  643 aactagagtctagaaaaaactca 665  Q
    | ||||||||||| | |||||||    
T  8499 atctagagtctagtagaaactca 8521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 601
Target Start/End: Original strand, 17133 - 17194
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaatt 601  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| ||||||    
T  17133 ttgttgtgattctttcaacgaaatagctttccaaattgactgattaagtgattatacaaatt 17194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 540 - 661
Target Start/End: Original strand, 46174 - 46295
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattattcaaattgatggtggtttaataacatcaaatttatgtcaagaaag 639  Q
    ||||||||||| ||||||||||||||  || |||||||||||||||||||||||| ||||||   |||||||| |||  |||| || |||||  | |||     
T  46174 ttgttgtgattatttcaatgaaatagacttccaaattgactgattaagtgattatccaaattatgggtggtttgataggatcagatatatgtataaaaat 46273  T
Q  640 tggaactagagtctagaaaaaa 661  Q
      ||||||||||||||||||||    
T  46274 gagaactagagtctagaaaaaa 46295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 454 - 529
Target Start/End: Complemental strand, 1214 - 1138
Alignment:
Q  454 gtgaaatttacctaacggtaccgtttggaat-gtcactcctacgtcgtaggaaaggggaaaacgaatggtttatgcg 529  Q
    |||||||||| ||||||||  |||||||| | |||||||||| || || | |||||| |||||||||||||||||||    
T  1214 gtgaaatttatctaacggtgtcgtttggatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcg 1138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 540 - 578
Target Start/End: Complemental strand, 1124 - 1086
Alignment:
Q  540 ttgttgtgattctttcaatgaaatagtttttcaaattga 578  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  1124 ttgttgtgattctttcaatgaaatagctttccaaattga 1086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 543 - 578
Target Start/End: Original strand, 22809 - 22844
Alignment:
Q  543 ttgtgattctttcaatgaaatagtttttcaaattga 578  Q
    |||||||||||||||||||||||||||||| |||||    
T  22809 ttgtgattctttcaatgaaatagtttttcatattga 22844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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