View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_14 (Length: 458)
Name: NF18013_low_14
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 226 - 444
Target Start/End: Original strand, 45465655 - 45465874
Alignment:
| Q |
226 |
cattccatcaacaa-tcatcgttcacaatgaatccagaaaaatttactcacaaaacaaacgaagcacttgctggtgcacacgagctagcaatgacttcag |
324 |
Q |
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| T |
45465655 |
cattccatcaacaaatcatcgttcacaatgaatccagaaaaatttactcacaaaacaaacgaagcacttgctggtgcacacgagctagcaatgacttcag |
45465754 |
T |
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| Q |
325 |
gccatgcacaaatcactcccttacaccttgcatcaattctagtttctgatcctaacggtattttcttccaagcaatttcaaatgttgctggtgaagaatc |
424 |
Q |
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| T |
45465755 |
gccatgcacaaatcactcccttacaccttgcatcaattctagtttctgatcctaacggtattttcttccaagcaatttcaaatgttgctggtgaagaatc |
45465854 |
T |
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| Q |
425 |
agcacgtgcggttgaacgtg |
444 |
Q |
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| T |
45465855 |
agcacgtgccgttgaacgtg |
45465874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 5 - 160
Target Start/End: Original strand, 45465446 - 45465601
Alignment:
| Q |
5 |
aagaaaagactcgaatataagagagtattctagtagtttctttttctcttccccccagaaacatctggactcatcttctccattaacaaatactcctctt |
104 |
Q |
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| T |
45465446 |
aagaaaagactcgaatagaagagagaattctagtagtttctttttctcttccccacagaaacatctggactcatcttctccattaacaaatactcctctt |
45465545 |
T |
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| Q |
105 |
cttcctcaccgcttcaatcaccgaatcaatcattcattcaattaacaatctatctt |
160 |
Q |
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| T |
45465546 |
cttcctcaccgcttcaatcaccgaatcaatcattcattcaattaacaatctatctt |
45465601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 309 - 431
Target Start/End: Original strand, 10043627 - 10043749
Alignment:
| Q |
309 |
ctagcaatgacttcaggccatgcacaaatcactcccttacaccttgcatcaattctagtttctgatcctaacggtattttcttccaagcaatttcaaatg |
408 |
Q |
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|||||||| | |||||| ||||| || |||||||| ||||||||||||| | | || ||||||||| || ||||| || |||||||||||||| |||| |
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| T |
10043627 |
ctagcaataagttcaggacatgctcagctcactcccatacaccttgcatccactttaatttctgatctcaatggtatatttttccaagcaatttccaatg |
10043726 |
T |
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| Q |
409 |
ttgctggtgaagaatcagcacgt |
431 |
Q |
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| T |
10043727 |
tcggtggtgacgaatctgcacgt |
10043749 |
T |
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