View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_low_15 (Length: 446)

Name: NF18013_low_15
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_low_15
NF18013_low_15
[»] chr5 (3 HSPs)
chr5 (6-417)||(35904724-35905135)
chr5 (114-340)||(33618002-33618233)
chr5 (383-423)||(42893409-42893449)
[»] chr2 (2 HSPs)
chr2 (148-310)||(44831161-44831327)
chr2 (382-418)||(35449561-35449597)
[»] chr7 (4 HSPs)
chr7 (49-207)||(43725251-43725408)
chr7 (253-307)||(43725405-43725459)
chr7 (358-423)||(21880201-21880266)
chr7 (358-423)||(598257-598322)
[»] chr4 (3 HSPs)
chr4 (35-249)||(37023026-37023240)
chr4 (358-423)||(22234824-22234889)
chr4 (358-426)||(24613635-24613703)
[»] chr6 (1 HSPs)
chr6 (358-426)||(5000560-5000628)
[»] chr1 (3 HSPs)
chr1 (392-423)||(43492473-43492504)
chr1 (354-422)||(5898207-5898275)
chr1 (383-423)||(21530738-21530778)
[»] scaffold0050 (1 HSPs)
scaffold0050 (358-423)||(70327-70392)
[»] chr3 (1 HSPs)
chr3 (358-423)||(25093551-25093616)
[»] scaffold0697 (1 HSPs)
scaffold0697 (383-423)||(1693-1733)


Alignment Details
Target: chr5 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 6 - 417
Target Start/End: Complemental strand, 35905135 - 35904724
Alignment:
Q  6 actacttgataatggagaaaattggttgcaagagatttggtgcgttgttatgtgcagaggattcagagtatgtgataaagatgcatggagggtattctgg 105  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35905135 actacttgataatggagaaaattggttgcaagagatttggtgtgttgttatgtgcagaggattcagagtatgtgataaagatgcatggagggtattctgg 35905036  T
Q  106 tgtattcttgaaaatgttggaggaagaaaatgagacatgggacatgtacaaagtttcatgtggagagtttcctaaggatgatgagttgagtctttatgat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35905035 tgtattcttgaaaatgttggaggaagaaaatgagacatgggacatgtacaaagtttcatgtggagagtttcctaaggatgatgagttgagtctttatgat 35904936  T
Q  206 gggtttgtgatcactggtagttgtaatgatgcttatggaaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaa 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904935 gggtttgtgatcactggtagttgtaatgatgcttatggaaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaa 35904836  T
Q  306 aaatccttggcgtttgttttggccaccaggtaattaattgttaatttatataaagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtg 405  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  35904835 aaatcattggcgtttgttttggccaccaggtaattaattgttaatttatataaagcacggacacttatcggattaagcgtgtcctagtgtcggacatgtg 35904736  T
Q  406 ttgtgtctgaca 417  Q
    ||||||| ||||    
T  35904735 ttgtgtcggaca 35904724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 114 - 340
Target Start/End: Original strand, 33618002 - 33618233
Alignment:
Q  114 tgaaaatgttggaggaagaaaatgagacatggga-----catgtacaaagtttcatgtggagagtttcctaaggatgatgagttgagtctttatgatggg 208  Q
    |||||||||||||||||||||| ||||||||| |     |||| |||| |||||| || |||||||| ||||||||||||| |||||||| |||||||||    
T  33618002 tgaaaatgttggaggaagaaaaggagacatggaatggaacatgcacaacgtttcacgttgagagttttctaaggatgatgaattgagtctctatgatggg 33618101  T
Q  209 tttgtgatcactggtagttgtaatgatgcttatggaaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaa 308  Q
    |||||||||||||||||||| | |||||| ||||||||| |||||| ||||||||| |||||||||||||||||| ||||  ||| || ||| |||||||    
T  33618102 tttgtgatcactggtagttgcagtgatgcctatggaaataagaaattgatatgtgaccttgtcacattgattaagtaattagacttcaagcacacaaaaa 33618201  T
Q  309 tccttggcgtttgttttggccaccaggtaatt 340  Q
    |||||||| || |||||||||||| |||||||    
T  33618202 tccttggcattggttttggccaccgggtaatt 33618233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 42893449 - 42893409
Alignment:
Q  383 cgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    ||||| || |||||||||| |||||||||||||||||||||    
T  42893449 cgtgtcctggtgtcggacacgtgttgtgtctgacaccgaca 42893409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 148 - 310
Target Start/End: Complemental strand, 44831327 - 44831161
Alignment:
Q  148 catgtacaaagtttcatgtggagagtttcctaaggatgatgagttgagtctttatgatgggtttgtgatc----actggtagttgtaatgatgcttatgg 243  Q
    ||||||||| |||||| |||||||||||  |||||||||||  |||||||| ||||||||||||||||||    ||||||||||| |||||||||| |||    
T  44831327 catgtacaatgtttcacgtggagagttttttaaggatgatgtattgagtctatatgatgggtttgtgatcgatcactggtagttgcaatgatgcttgtgg 44831228  T
Q  244 aaatgagaaatggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaaatc 310  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||  ||| |||||| |||| ||||    
T  44831227 aaataagaagtggatatgtgaccttgtcacaatgattaagaaattagactacatgcacacaagaatc 44831161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 418
Target Start/End: Complemental strand, 35449597 - 35449561
Alignment:
Q  382 acgtgttctagtgtcggacatgtgttgtgtctgacac 418  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  35449597 acgtgttctggtgtcggacatgtgtcgtgtctgacac 35449561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 49 - 207
Target Start/End: Original strand, 43725251 - 43725408
Alignment:
Q  49 gttgttatgtgcagaggattcagagtatgtgataaagatgcatggagggtattctggtgtattcttgaaaatgttggaggaagaaaatgagacatgggac 148  Q
    |||||| |||||||||||||||||| |||||||||||||| |||||||||||| ||| || ||| ||||||   |||| |||||||| ||||||| || |    
T  43725251 gttgttgtgtgcagaggattcagagcatgtgataaagatgtatggagggtattttggggtgttcctgaaaa---tggatgaagaaaaggagacataggtc 43725347  T
Q  149 atgtac-aaagtttcatgtggagagtttcc-taaggatgatgagttgagtctttatgatgg 207  Q
    |||||| ||||||||| ||||||||||||| ||| |||| ||| |||||||| ||||||||    
T  43725348 atgtacaaaagtttcacgtggagagtttccttaaagatggtgaattgagtctctatgatgg 43725408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 43725405 - 43725459
Alignment:
Q  253 atggatatgtgatcttgtcacattgattaagaaattgaactccatgcagacaaaa 307  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||| ||||||    
T  43725405 atggatatgtgaccttgtcacattgattaagaaattagactccatgcacacaaaa 43725459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 21880266 - 21880201
Alignment:
Q  358 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    ||||||| |||||| ||||||||  ||||| || ||||||||||||||| ||||| ||||||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgaca 21880201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 598322 - 598257
Alignment:
Q  358 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    ||||||| |||||| ||||||||  ||||| |  |||||||||| |||| ||||||||||||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgaca 598257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 249
Target Start/End: Original strand, 37023026 - 37023240
Alignment:
Q  35 aagagatttggtgcgttgttatgtgcagaggattcagagtatgtgataaagatgcatggagggtattctggtgtattcttgaaaatgttggaggaagaaa 134  Q
    ||||||||||| | ||||||||||||||| |||||||| |||||||  || ||| | |||||||||| ||| |||||  ||| ||||||||||||||||     
T  37023026 aagagatttggggtgttgttatgtgcagatgattcagaatatgtgaagaaaatgtacggagggtattttggggtatttgtgagaatgttggaggaagaag 37023125  T
Q  135 atgagacatgggacatgtacaaagtttcatgtggagagtttcctaaggatgatgagttgagtctttatgatgggtttgtgatcactggtagttgtaatga 234  Q
     ||| |  |||||  |||| || ||  |  |||| ||||||||  | ||||| || |||| ||| ||||||||||||||||||||||||||||||| |||    
T  37023126 gtgaaagctgggatgtgtataaggtggcgcgtggtgagtttccagatgatgaagatttgaatctgtatgatgggtttgtgatcactggtagttgtagtga 37023225  T
Q  235 tgcttatggaaatga 249  Q
    |||  ||||||||||    
T  37023226 tgcacatggaaatga 37023240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Original strand, 22234824 - 22234889
Alignment:
Q  358 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    |||||||||||||| ||||||||   |||| || |||||||||| |||| ||||| ||||||||||    
T  22234824 aagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgaca 22234889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 24613635 - 24613703
Alignment:
Q  358 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatga 426  Q
    ||||||| |||||  | |||||| |||||| || ||||| |||| |||| |||||||||||||||||||    
T  24613635 aagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgacatga 24613703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 358 - 426
Target Start/End: Original strand, 5000560 - 5000628
Alignment:
Q  358 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgacatga 426  Q
    |||||||||||||  |||||||| |||||| || |||||||| |||||| |||||||||||||||||||    
T  5000560 aagcacgaacactcttcggattagacgtgtcctggtgtcggatatgtgtcgtgtctgacaccgacatga 5000628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 423
Target Start/End: Original strand, 43492473 - 43492504
Alignment:
Q  392 gtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    ||||||||||||||||||||||||||||||||    
T  43492473 gtgtcggacatgtgttgtgtctgacaccgaca 43492504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 5898207 - 5898275
Alignment:
Q  354 tataaagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgac 422  Q
    ||||||||||| |||||  |||||||| |||||| |  |||| ||||| |||| |||||||||||||||    
T  5898207 tataaagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgac 5898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 21530778 - 21530738
Alignment:
Q  383 cgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  21530778 cgtgtcctagtgtcggacatgtgtcgtgtccgacaccgaca 21530738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 70392 - 70327
Alignment:
Q  358 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    ||||||||||||| |||||||||  | ||| || |||||||||| |||| ||||| ||||||||||    
T  70392 aagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgaca 70327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 423
Target Start/End: Complemental strand, 25093616 - 25093551
Alignment:
Q  358 aagcacgaacacttatcggattaaacgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    |||||||||||||  || ||||| | ||| |  |||||||||||||||||||||| ||||||||||    
T  25093616 aagcacgaacactcttcagattagaagtgcttcagtgtcggacatgtgttgtgtccgacaccgaca 25093551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 423
Target Start/End: Complemental strand, 1733 - 1693
Alignment:
Q  383 cgtgttctagtgtcggacatgtgttgtgtctgacaccgaca 423  Q
    ||||| |||||||||||||||||| ||||| ||||||||||    
T  1733 cgtgtcctagtgtcggacatgtgtcgtgtccgacaccgaca 1693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University