View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_16 (Length: 426)
Name: NF18013_low_16
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 20170412 - 20170804
Alignment:
| Q |
1 |
caaagttcattttgataaaccctaggataccatgttggttacttcatcaaggttatatattatctctattaagctcctaaatatgtggccatgctttctt |
100 |
Q |
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| T |
20170412 |
caaagttcattttgataaaccctaggataccatgttggttacttcatcaaggtta----------------agctcctaaatatgtggccatactttctt |
20170495 |
T |
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| Q |
101 |
atatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaaccatataattaactcacaattaaagtcttcgtatcatttcacaaa |
200 |
Q |
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| T |
20170496 |
atatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaagcatataattaactcacaattaaagtcttcgtatcatttcacaaa |
20170595 |
T |
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| Q |
201 |
ggagttttatttttaaacacccaaacaatcaatctacttcttgagagaaaaagatataatatactaatatatgtgataggttgataacatgatatgaaat |
300 |
Q |
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| T |
20170596 |
ggagttttatttttaaatacccaaacaatcaatctacatcttgagagaaaaagatataatatactaatatatgtgataggttgataacatgatatgaaat |
20170695 |
T |
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| Q |
301 |
gagagatggagataaaatgatgcgttgaatgagtgttgaaaatttaagaatgtttaaattaatataagtgttctttcaaaaacattgagtaagcaagaca |
400 |
Q |
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| T |
20170696 |
gagagatggagataaaataaggcgttgaatgagtgttgaaaatttaagaatgttta----aatataagtgttctttcaaaaacatcgagtaagcaagaca |
20170791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 44392122 - 44392514
Alignment:
| Q |
1 |
caaagttcattttgataaaccctaggataccatgttggttacttcatcaaggttatatattatctctattaagctcctaaatatgtggccatgctttctt |
100 |
Q |
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| T |
44392122 |
caaagttcattttgataaaccctaggataccatgttggttacttcatcaaggtta----------------agctcctaaatatgtggccatactttctt |
44392205 |
T |
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| Q |
101 |
atatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaaccatataattaactcacaattaaagtcttcgtatcatttcacaaa |
200 |
Q |
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| T |
44392206 |
atatgattcataaatctataaattcaatgtatagtaatgccacttacatttaaaagcatataattaactcacaattaaagtcttcgtatcatttcacaaa |
44392305 |
T |
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| Q |
201 |
ggagttttatttttaaacacccaaacaatcaatctacttcttgagagaaaaagatataatatactaatatatgtgataggttgataacatgatatgaaat |
300 |
Q |
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| T |
44392306 |
ggagttttatttttaaatacccaaacaatcaatctacatcttgagagaaaaagatataatatactaatatatgtgataggttgataacatgatatgaaat |
44392405 |
T |
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| Q |
301 |
gagagatggagataaaatgatgcgttgaatgagtgttgaaaatttaagaatgtttaaattaatataagtgttctttcaaaaacattgagtaagcaagaca |
400 |
Q |
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| T |
44392406 |
gagagatggagataaaataaggcgttgaatgagtgttgaaaatttaagaatgttta----aatataagtgttctttcaaaaacatcgagtaagcaagaca |
44392501 |
T |
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