View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_18 (Length: 405)
Name: NF18013_low_18
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 388
Target Start/End: Complemental strand, 26217987 - 26217616
Alignment:
| Q |
17 |
taagaattagaatctttcatcggtgatgtgatattcctactacgctatatttctaacttttgaaaattgattgactggcctgacatgtcttcttaagttt |
116 |
Q |
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| T |
26217987 |
taagaattagaatctttcaccggtgatgtgatattcctactatgctatatttttaacttttgaaaattgattgactggcctgacatgtcttcttaagttt |
26217888 |
T |
|
| Q |
117 |
taaaaatattttgcatcactcaagcttcaccctatgttgctttnnnnnnnttaaaagtagtaatctacaaatagaagatgagagataattagatcattag |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217887 |
taaaaatattttgcatcactcaagcttcaccctatgttgctttaaaaaaattaaaagtagtaatctacaaatagaagatgagagataattagatcattag |
26217788 |
T |
|
| Q |
217 |
tacatatttagactccgtgaatttctcctttctaatcagggctgataagccttcatcataaagaaacccataagaaagggtccccttgttgaagacctct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217787 |
tacatatttagactccgtgaatttctcctttctaatcagggctgataaaccttcatcataaagaaacccataagaaagggtccccttgttgaagacctct |
26217688 |
T |
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| Q |
317 |
tgcaagtatgatagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacat |
388 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217687 |
tgcaagtatgacagggtccactacacttctattaacaatgacggagtaatccataattcaaacacacaacat |
26217616 |
T |
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