View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_2 (Length: 687)
Name: NF18013_low_2
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 13 - 663
Target Start/End: Complemental strand, 15215131 - 15214482
Alignment:
| Q |
13 |
attattcttataataatatgtggaagcatacacaatgaacaaaatataactaagtccacctctattttcatcacataaaagtatcattggagaattcatt |
112 |
Q |
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| T |
15215131 |
attattcttata-taatatgtggaagcatacacaatgaacaaaatataactaagtccacctctattttcatcacataaaagtatcattggagaattcatt |
15215033 |
T |
|
| Q |
113 |
cacagttaggtcatgcaaaccaaaatcattatccacaaccaatccatcagaaacatccaagttcctaggccttgacaacgagttacccgaattcggaaca |
212 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15215032 |
cacagttagatcatgcaaaccaaaatcattatccacaaccaatccatcagaaacatccaagttcctaggccttgacaacgagttacccgaattcggaaca |
15214933 |
T |
|
| Q |
213 |
aaattgttgttcttgacatattcaaatgagttatagccactctgctgttgccgaggcgcttgaatctgttccttgttccatggaaatggcttagtcactt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
15214932 |
aaattgttgttcttgacatattcaaatgagttatagccactctgctgttgccgaggcgcttgaatttgctccttgttccatggaaatggcttagtcactt |
15214833 |
T |
|
| Q |
313 |
gatgatgaacttgattataacttgtgctactaagttgtgacattaacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15214832 |
gatgatgaacttgattataacttgtgctactaagttgtgacattaacctagctgttgtgtcatgttgaacattctgtttgctactaccttgttgaaagtt |
15214733 |
T |
|
| Q |
413 |
taaggtaataggtcctttatgaacacctagcgacgacgacgaggacaaagttgtactaggacaaccagtgaattgttgcacaagttgtctaaaattggtt |
512 |
Q |
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| T |
15214732 |
taaggtaataggtcctttatgaacacctagcgacgacgacgaggacaaagttgtactaggacaaccagtgaattgttgcacaagttgtctaaaattggtt |
15214633 |
T |
|
| Q |
513 |
gtatttgcattgagtagtgttgttggtgttctcttagaagctctagatcttcttctaattggtttggatatattaccaccctttggtgtcaattggtcac |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15214632 |
gtatttgcattgagtagtgttgttggtgttctcttagaagctctagatcttcttctaattggtttggatatattaccaccctttggtgtcaattggtcac |
15214533 |
T |
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| Q |
613 |
tagtgtttgtgtatgaatttgttgggctcaaaatcatagtctctaatggaa |
663 |
Q |
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| T |
15214532 |
tagtgtttgtgtatgaatttgttgggctcaaaatcatagtctctaatggaa |
15214482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 599 - 649
Target Start/End: Complemental strand, 26777185 - 26777135
Alignment:
| Q |
599 |
tgtcaattggtcactagtgtttgtgtatgaatttgttgggctcaaaatcat |
649 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
26777185 |
tgtcaattggtaactactgtttgtgtatgaatttgttgggctcaaaatcat |
26777135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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