View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_21 (Length: 374)
Name: NF18013_low_21
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_21 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 374
Target Start/End: Complemental strand, 44261137 - 44260790
Alignment:
| Q |
8 |
tgagaagaaatggtgacagtagattcgccgattgctatgacgaataacgctcttttgtttctggaggtggcttttacaagaatgctttacgatgatggag |
107 |
Q |
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| T |
44261137 |
tgagaagaaatggtgacagtagattcaccgattgctatgacgaataacgctcttttgtttctggaggtggcttttacaagaatgctttacgatgacggag |
44261038 |
T |
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| Q |
108 |
ccttggaacatgtttataatataattttatctacttttctttcatccttagagagcaattgctaacaatatactcctatctatagaacataaattatatg |
207 |
Q |
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| T |
44261037 |
ccttggaacatgtttataatataattttatctacttttctttcatccttagagagcaattgctaacaatatactcctatctatagaacataaattatatg |
44260938 |
T |
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| Q |
208 |
tgctgttgatggatcaaatgaatacctgacacaaacttaaattaaccaactaaacatgaacataaaaccaagttcaaaacacaaacatagaaaacttaaa |
307 |
Q |
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| T |
44260937 |
tgctgttgatggatcaaatgaatacctgacacaaacttaaattaaccaactaaacatg-------------------aacacaaacatagaaaacttaaa |
44260857 |
T |
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| Q |
308 |
ctcaagtcaatataaatgcaatttctctagacatagtcagaacaaaatacaaacaagaagctagttt |
374 |
Q |
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| T |
44260856 |
ctcaagtcaatataaatgcaatttctctagacatagtcagaacaaaatacaaacaagaagctagttt |
44260790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 147 - 219
Target Start/End: Complemental strand, 44265151 - 44265085
Alignment:
| Q |
147 |
tttcatccttagagagcaattgctaacaatatactcctatctatagaacataaattatatgtgctgttgatgg |
219 |
Q |
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| T |
44265151 |
tttcatccttagatagcaattgctaacaatata------tctgtagaacataaattatatgtgctgttgatgg |
44265085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 16053556 - 16053615
Alignment:
| Q |
296 |
agaaaacttaaactcaagtcaatataaatgcaatttctctagacatagtcagaacaaaata |
356 |
Q |
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| T |
16053556 |
agaaaactttaaatctaatcaatattaatgcagtttctctagacatagtc-gaacaaaata |
16053615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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