View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_22 (Length: 367)
Name: NF18013_low_22
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_22 |
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| [»] scaffold0065 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 17 - 360
Target Start/End: Original strand, 46337547 - 46337890
Alignment:
| Q |
17 |
gtcatagagttaagagttgattttaatttaacatgcaaatcattatttttaacatatgtattgtacaggtagggtaaaagagatcatcatgtcttttgat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337547 |
gtcatagagttaagagttgattttaatttaacatgcaaatcattatttttaacatatgtattgtacaggtagggtaaaagagatcatcatgtcttttgat |
46337646 |
T |
|
| Q |
117 |
tatattccaaagcatttacatttggacaagttcattcatttaatgttgacttctaatcccaaggcctacannnnnnnaggtaagaaacaaacttcccaac |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
46337647 |
tatattccaaagcatttacatttggacaagttcattcatttgatgatgacttctaatcccaaggcctacatttttttaggtaagaaacaaacttcccaat |
46337746 |
T |
|
| Q |
217 |
taatcaagtgtgatttatgtaacgtccaaattactttcaggattgtcgattaaccccacaaattaatacgagtcttttcagcatgccatattcttactaa |
316 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337747 |
taatcaagtgtgatttatgtaacgcccaaattactttcaggattgtcgattaaccccacaaattaatacgagtcttttcagcatgccatattcttactaa |
46337846 |
T |
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| Q |
317 |
cacactttttgagaaacttctgagatgataacccatattcttgg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46337847 |
cacactttttgagaaacttctgagatgataacccatattgttgg |
46337890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 301
Target Start/End: Original strand, 20053948 - 20053999
Alignment:
| Q |
250 |
ctttcaggattgtcgattaaccccacaaattaatacgagtcttttcagcatg |
301 |
Q |
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| T |
20053948 |
ctttcaggattgtcgactgaccccacaaaccaacacgagtcttttcagcatg |
20053999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 50002574 - 50002623
Alignment:
| Q |
249 |
actttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
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||||||||||||||||| | |||||||||| || ||||||||||||||| |
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| T |
50002574 |
actttcaggattgtcgactgaccccacaaaccaacacgagtcttttcagc |
50002623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 30719678 - 30719717
Alignment:
| Q |
255 |
aggattgtcgattaaccccacaaattaatacgagtctttt |
294 |
Q |
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| T |
30719678 |
aggattggcgattgaccccacaaattaatacgagtctttt |
30719717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 296
Target Start/End: Original strand, 24182107 - 24182160
Alignment:
| Q |
243 |
caaattactttcaggattgtcgattaaccccacaaattaatacgagtcttttca |
296 |
Q |
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||||| ||||||||||||||||| |||||||||||| || |||| |||||||| |
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| T |
24182107 |
caaatgactttcaggattgtcgactaaccccacaaaccaacacgaatcttttca |
24182160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 62973 - 63023
Alignment:
| Q |
248 |
tactttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
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|||||||||||||| ||| | |||||||||| |||||||||||||||||| |
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| T |
62973 |
tactttcaggattgccgactgaccccacaaaccaatacgagtcttttcagc |
63023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 154580 - 154532
Alignment:
| Q |
250 |
ctttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
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|
||||||| |||||||| | ||||||||||| || ||||||||||||||| |
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| T |
154580 |
ctttcagcattgtcgactgaccccacaaatcaacacgagtcttttcagc |
154532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 21315978 - 21316026
Alignment:
| Q |
250 |
ctttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
| |
|
|||| ||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
21315978 |
cttttaggattgtcgattgaccccacaaaccaacacgagtcttttcagc |
21316026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Complemental strand, 2193534 - 2193486
Alignment:
| Q |
250 |
ctttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
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|
|||||||||||| ||| | ||||||||||| || ||||||||||||||| |
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| T |
2193534 |
ctttcaggattgccgactgaccccacaaatcaacacgagtcttttcagc |
2193486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 7646694 - 7646646
Alignment:
| Q |
249 |
actttcaggattgtcgattaaccccacaaattaatacgagtcttttcag |
297 |
Q |
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|
||||| ||||||||||| |||||||||||| || |||||||||||||| |
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| T |
7646694 |
acttttaggattgtcgactaaccccacaaaccaacacgagtcttttcag |
7646646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 13122372 - 13122420
Alignment:
| Q |
250 |
ctttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
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|||||||||||| ||||| |||||||||| || ||||||||||||||| |
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| T |
13122372 |
ctttcaggattgccgattgaccccacaaaccaacacgagtcttttcagc |
13122420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 24629298 - 24629346
Alignment:
| Q |
250 |
ctttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
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|
|||||||||||| ||| | |||||||||| ||| ||||||||||||||| |
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| T |
24629298 |
ctttcaggattgccgactgaccccacaaactaacacgagtcttttcagc |
24629346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 13150422 - 13150470
Alignment:
| Q |
250 |
ctttcaggattgtcgattaaccccacaaattaatacgagtcttttcagc |
298 |
Q |
| |
|
||||||| |||||||| | ||||||||||| || ||||||||||||||| |
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|
| T |
13150422 |
ctttcagcattgtcgactgaccccacaaatcaacacgagtcttttcagc |
13150470 |
T |
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