View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_24 (Length: 347)
Name: NF18013_low_24
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 3652299 - 3651987
Alignment:
| Q |
19 |
ataccactaattgtatagtggtgagcctcattatatactatgttatgttgcatttagctattttatttctatgcatgaatttcataaatggtgttgcaaa |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3652299 |
atacaactaattgtatagtggtgagcctcattatatactatgctatgttgcatttagctattttatttctatgcatgaatttcataaatggtgttgcaaa |
3652200 |
T |
|
| Q |
119 |
tgttgttatggtatttccttttcataataaataataaaaaggttttatttgtaccctactactcttcgaccacatgtttaggttaatatatatacacctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
3652199 |
tgttgttatggtatttccttttcataataaataataaaaaggttttatttgtaccctactactcttggaccacatgtttaggttaata--tatacacctc |
3652102 |
T |
|
| Q |
219 |
aattcaattatttccagcaagaatcagctgtgtttctatatgaagtttctctaaaatataagctatgccttttgtttgggctagaagtgggtagctatct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||| |||| |
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| T |
3652101 |
aattcaattatttccagcaagaatcagctgtgtttctatatgaagtttctctaaaatataaggtatgctttttgttttggctagaagtggctagccatct |
3652002 |
T |
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| Q |
319 |
cttgttatgtggtcc |
333 |
Q |
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||||||||||||||| |
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| T |
3652001 |
cttgttatgtggtcc |
3651987 |
T |
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