View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_26 (Length: 303)
Name: NF18013_low_26
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 287
Target Start/End: Original strand, 16301372 - 16301646
Alignment:
| Q |
13 |
aatatggggaattctaggttggtggggaaatatgggaaatgcatttggtgtgactaatattccagggtttagtcctggactaaccttaccacaagcactt |
112 |
Q |
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| T |
16301372 |
aatatggggaattctaggttggtggggaaatatgggaaatgcatttggtgtgactaatattccagggtttagtcctggtttaaccttaccacaagcactt |
16301471 |
T |
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| Q |
113 |
tccaacacaagaactgatggtttaggagcactctacagagaaggaactgcttcatttcttaactccttggtgaacaacaagttcccttacacaactgccc |
212 |
Q |
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| T |
16301472 |
tccaacacaagaactgatggtttaggagcactctacagagaaggaactgcttcatttcttaactccttggtgaacaacaagttcccttacacaactgacc |
16301571 |
T |
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| Q |
213 |
aagttaaggacaggtttgcatcatcacttaactccaacaaggctgctgcaacacaagctcaccttttcaacatgg |
287 |
Q |
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| T |
16301572 |
aagttaaggacaggtttgcatcatcacttcactccaacaaggctgctgcaacacaagctcaccttttcaagatgg |
16301646 |
T |
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Back To:
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Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 270
Target Start/End: Original strand, 40051968 - 40052137
Alignment:
| Q |
101 |
ccacaagcactttccaacacaagaactgatggtttaggagcactctacagagaaggaactgcttcatttcttaactccttggtgaacaacaagttccctt |
200 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| ||||||||||| | ||||| | |||||||||| ||||||||||||||||||||| |
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| T |
40051968 |
ccacaagcactttccaacacaagaactgatgcactcggagcactttacagagaaggtgcagcttcttatcttaactccctggtgaacaacaagttccctt |
40052067 |
T |
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| Q |
201 |
acacaactgcccaagttaaggacaggtttgcatcatcacttaactccaacaaggctgctgcaacacaagc |
270 |
Q |
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| T |
40052068 |
acacaactgatcaagtcagagacagatttgtagcatcactcagctcaaataaggctgcagcaacacaagc |
40052137 |
T |
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