View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_3 (Length: 622)
Name: NF18013_low_3
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 493; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 11 - 606
Target Start/End: Complemental strand, 1680896 - 1680300
Alignment:
| Q |
11 |
gaatatatgattcacaataaaatgnnnnnnnnagtcaacaaaatgatcatattttcacaataaaatggnnnnnnnnn-agtcaacaaaatgatatatttt |
109 |
Q |
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| T |
1680896 |
gaatatatgattcacaataaaatgttttttttagtcaacaaaatgatcatattttcacaataaaatggttttttttttagtcaacaaaatgatatatttt |
1680797 |
T |
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| Q |
110 |
cttagaggtcaacaaaatgatcttgaaaatnnnnnnntaaacgattaaaattaaacacacaacaatgttatataatgatcacagctttgtctaaatttct |
209 |
Q |
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| T |
1680796 |
cttagaggtcaacaaaatgatcttgaaaataaaaaaataaatgattaaaattaaacacacaacaatgttatataatgatcacagctttgtctaaatttct |
1680697 |
T |
|
| Q |
210 |
tcgtatttcaaaacctctttctgttctatcacatatagagaaagaaaaaatggttcctctccaatcatttcatccatacctatccatcattttactattg |
309 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
1680696 |
tcgtatttcaaaacctctttctgttctatcacatacagagaaagaaaaaatggttcctctccaatcatttaatccatacctagccatcattttactattg |
1680597 |
T |
|
| Q |
310 |
ttccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaaatcatctcaccgttcatctaacaatattcaag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
1680596 |
ttccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaagtcatctcacctttcatctaacaatattcaag |
1680497 |
T |
|
| Q |
410 |
atattgtacaagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacacggg |
509 |
Q |
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| T |
1680496 |
atattgtacaagcacctataaatgcatatattggccaatatctcatggagttgtatattggaactccaccaataaaaatatcaggtaccgtagacacggg |
1680397 |
T |
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| Q |
510 |
aagtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaaccctatgtttgatcctctaaaatcttcaacatacactaat |
606 |
Q |
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| T |
1680396 |
aagtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaaccaaataaaccctatgtttgatcctctaaaatcttcaacatacactaat |
1680300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 161 - 590
Target Start/End: Complemental strand, 1669199 - 1668780
Alignment:
| Q |
161 |
taaacacacaacaatgttatataatgatcacagctttgtctaaatttcttcgtatttcaaaacctctttctgttctatcacatatagagaaagaaaaa-- |
258 |
Q |
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| T |
1669199 |
taaacacaaaacaatgttgtataaaaaccacagctttgtccaaatttcttcatattttaaaacctctttctcttatatgacatatagaggacaaaagagc |
1669100 |
T |
|
| Q |
259 |
atggttcctctccaatcatttcatccatacctatccatcattttactattgttccacctcttacatttttcatccattgaagcccaaaatgacgggttca |
358 |
Q |
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| T |
1669099 |
atggttcctctccaatcattttatccatacctagccataatttttctattattccatgttttacatttgtcatccattgaagcccaaaatgacgggttca |
1669000 |
T |
|
| Q |
359 |
ctgttaaactcattcggaaatcatctcaccgttcatctaacaatattcaagatattgtacaagcacctataaatgcatatattggccaatatctcatgga |
458 |
Q |
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| T |
1668999 |
ctatcaaactgtttcgtaaaacatct------------aacaatattcaaaatattgtacaagcacctataaatgcctatattggccaacatctcatgga |
1668912 |
T |
|
| Q |
459 |
gttgtatattggaactccaccaataaaaatatcaggtaccgtagacacgggaagtgacctgatatgggtccaatgtgtaccttgtttagggtgctacaac |
558 |
Q |
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| T |
1668911 |
aatatatattggaactccaccaataaaaataacaggccttgtagacacaggaagtgatcttatatggatccaatgtgcaccttgtttaggttgctacaaa |
1668812 |
T |
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| Q |
559 |
caaataaaccctatgtttgatcctctaaaatc |
590 |
Q |
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| T |
1668811 |
caaataaaacccatgtttgatcctctaaaatc |
1668780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 213 - 392
Target Start/End: Complemental strand, 1661691 - 1661510
Alignment:
| Q |
213 |
tatttcaaaacctctttctgttctatcacatatagag--aaagaaaaaatggttcctctccaatcatttcatccatacctatccatcattttactattgt |
310 |
Q |
| |
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||||| ||||||||||| | || |||||||||||||| || | || ||||||||||||||||||||| ||||||| || |||||||||| ||||| | |
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| T |
1661691 |
tattttaaaacctctttatcttatatcacatatagaggacaaaagaacatggttcctctccaatcattttatccatatttagccatcatttttctattat |
1661592 |
T |
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| Q |
311 |
tccacctcttacatttttcatccattgaagcccaaaatgacgggttcactgttaaactcattcggaaatcatctcaccgttc |
392 |
Q |
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| T |
1661591 |
tccatcttttatattttttatccattgaagcccaaaatgacgggttcaccgtcaaactgcttcgtaaaacatctaaccgttc |
1661510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 1662161 - 1662105
Alignment:
| Q |
161 |
taaacacacaacaatgttatataatgatcacagctttgtctaaatttcttcgtattt |
217 |
Q |
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| T |
1662161 |
taaacacaaaataatgttatataaaaaccacagctttgtccaaatttcttcatattt |
1662105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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