View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_31 (Length: 251)
Name: NF18013_low_31
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 4027393 - 4027598
Alignment:
| Q |
22 |
aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgagaaatttttcaagtcccaattcttgacattaagg |
121 |
Q |
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| T |
4027393 |
aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgagaaatttttcaagtcccaattcttgacattaagg |
4027492 |
T |
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| Q |
122 |
accaaaatgatagtttgctctaatatctgcaaattaacatttagttctattatacaatgatttctacataagtgtgcaggacatagaatataaggaaggt |
221 |
Q |
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| T |
4027493 |
accaaaatgatagtttgctctaatatctgcaaattaatatttagttctattatacaatgatttctacataagtgtgcaggacatagaatataaggaaggt |
4027592 |
T |
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| Q |
222 |
cacaaa |
227 |
Q |
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|||||| |
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| T |
4027593 |
cacaaa |
4027598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 3951483 - 3951297
Alignment:
| Q |
22 |
aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacacatgaga--aatttttcaagtcccaattcttgacattaa |
119 |
Q |
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|||||| ||||||||||||||||||||||||| ||| | || | | |||||| || |||||| || || || |||||||||||||||||||||| |||| |
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| T |
3951483 |
aggcaactctaagttgttaaaactcataaaagtttactggttaaaatccctccgagctacacgtgtgacgaagttttcaagtcccaattcttgactttaa |
3951384 |
T |
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| Q |
120 |
ggaccaaaatgatagtttgctctaatatctgca-aattaacatttagttctattatacaatgatttctacat--aagtgtgcaggacat |
205 |
Q |
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| T |
3951383 |
ggaacaaaatg--agtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcataaaagtgtgcaggacat |
3951297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 4013094 - 4013184
Alignment:
| Q |
22 |
aggcaattctaagttgttaaaactcataaaagcttattagtcatagtccctctgacctacaca--tgagaaatttttcaagtcccaattct |
110 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| || ||| | ||||||| |||| | ||||||||||||||||||| |
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| T |
4013094 |
aggcaattctaagtcattaaaactcataaaagcttattagtcataatctctcaaagctacacatgtgagcattttttcaagtcccaattct |
4013184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 3990265 - 3990312
Alignment:
| Q |
24 |
gcaattctaagttgttaaaactcataaaagcttattagtcatagtccct |
72 |
Q |
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|||||||||||| ||||| ||||||||||| |||||||||||| ||||| |
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| T |
3990265 |
gcaattctaagt-gttaagactcataaaagtttattagtcataatccct |
3990312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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