View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18013_low_34 (Length: 235)
Name: NF18013_low_34
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 20170441 - 20170238
Alignment:
| Q |
13 |
gtatcatagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcactagaaagtgggaaccaacatattactgacaagttacgac |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20170441 |
gtatcctagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcgctagaaagtgggaaccaacatattactgacaagttacgac |
20170342 |
T |
|
| Q |
113 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttatatggtatacgataagtgtat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
20170341 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttgtatggtatacgataagtgtat |
20170242 |
T |
|
| Q |
213 |
atac |
216 |
Q |
| |
|
|||| |
|
|
| T |
20170241 |
atac |
20170238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 44392151 - 44391948
Alignment:
| Q |
13 |
gtatcatagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcactagaaagtgggaaccaacatattactgacaagttacgac |
112 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44392151 |
gtatcctagggtttatcaaaatgaactttgattctatatgtgaagggaagtggtaagtcgctagaaagtgggaaccaacatattactgacaagttacgac |
44392052 |
T |
|
| Q |
113 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttatatggtatacgataagtgtat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44392051 |
aaatagtctttgctgttacaaggaaacctttgttatgtatgactaaattttctcaggtgacccatgtctaagtgacttgtatggtatacgataagtgtat |
44391952 |
T |
|
| Q |
213 |
atac |
216 |
Q |
| |
|
|||| |
|
|
| T |
44391951 |
atac |
44391948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University