View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18013_low_6 (Length: 598)
Name: NF18013_low_6
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18013_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 9 - 175
Target Start/End: Original strand, 46732883 - 46733048
Alignment:
| Q |
9 |
gtttttgaaaacttattgtaggcacaagccacacatttgtccttggtatcagattatgtgacaaatgtgagttagaaatctcgcatcgaatnnnnnnngt |
108 |
Q |
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| T |
46732883 |
gtttttgaaaacttattgtaggcacaagccacacatttgtccttggtatcggattatgtgacaaatgtgagttagaaatctcgcatcgaat-aaaaaagt |
46732981 |
T |
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| Q |
109 |
gagtgttaaatgaatataagtgagatgactcataaattcaatggatttatgaccaatttgatggtac |
175 |
Q |
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| T |
46732982 |
gagtgttaaatgaatataagtgagatgactcataaattcaatggatttatgaccaatttgatggtac |
46733048 |
T |
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Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 341 - 482
Target Start/End: Original strand, 46733210 - 46733351
Alignment:
| Q |
341 |
caatcttgtcgtttgagtatgatatgtattttatcttgtcaaagttaaaaataattttttacatatttaaatctnnnnnnntaatgaatgattttatcaa |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
46733210 |
caatcttgtcgtttgagtatgatatgtattttatcttgtcaaagttaaaaataattttttacatatttaaatctaaaaaaataatgaatgattttatcca |
46733309 |
T |
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| Q |
441 |
gtttcttatgacgtgtgtctcaaacacatgataacatagacg |
482 |
Q |
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| T |
46733310 |
attttttatgacgtgtgtctcaaacacatgataatatagacg |
46733351 |
T |
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