View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18013_low_8 (Length: 548)

Name: NF18013_low_8
Description: NF18013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18013_low_8
NF18013_low_8
[»] chr3 (2 HSPs)
chr3 (162-429)||(45985624-45985890)
chr3 (19-118)||(45985484-45985583)
[»] chr5 (3 HSPs)
chr5 (428-494)||(12874060-12874126)
chr5 (429-495)||(11465241-11465305)
chr5 (429-461)||(43466671-43466703)
[»] scaffold0238 (1 HSPs)
scaffold0238 (428-491)||(14018-14081)
[»] chr6 (4 HSPs)
chr6 (428-494)||(27771208-27771274)
chr6 (426-494)||(27118757-27118825)
chr6 (428-484)||(34416744-34416800)
chr6 (425-494)||(24691796-24691865)
[»] chr8 (1 HSPs)
chr8 (429-494)||(8813557-8813622)
[»] chr4 (5 HSPs)
chr4 (429-490)||(54568374-54568435)
chr4 (428-468)||(15709422-15709462)
chr4 (426-462)||(31523590-31523626)
chr4 (426-468)||(8194616-8194658)
chr4 (428-461)||(22734670-22734703)
[»] scaffold0001 (1 HSPs)
scaffold0001 (429-491)||(414521-414583)
[»] chr1 (3 HSPs)
chr1 (429-495)||(45237689-45237755)
chr1 (456-491)||(12602862-12602897)
chr1 (428-461)||(40911126-40911159)
[»] chr2 (3 HSPs)
chr2 (426-461)||(10979758-10979793)
chr2 (429-494)||(9362184-9362249)
chr2 (454-491)||(10454175-10454212)
[»] chr7 (5 HSPs)
chr7 (448-494)||(37446785-37446831)
chr7 (429-484)||(14591865-14591920)
chr7 (429-484)||(16011456-16011511)
chr7 (428-461)||(10643185-10643218)
chr7 (428-468)||(18484619-18484659)
[»] scaffold0642 (1 HSPs)
scaffold0642 (426-468)||(7755-7797)
[»] scaffold0345 (1 HSPs)
scaffold0345 (426-468)||(17668-17710)
[»] scaffold0105 (1 HSPs)
scaffold0105 (426-468)||(21272-21314)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 162 - 429
Target Start/End: Original strand, 45985624 - 45985890
Alignment:
Q  162 tgagatctccaatttagacaagtagaagaaggaaaactagatagcagaatttaagcaagttataaaatatttcgatatcaagcttttgagaagnnnnnnn 261  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||           
T  45985624 tgagatctccaatttagataagtagaagaaggaaaattagatagcagaatttaagcaagttataatatacttcgatatcaagcttttgagaagaaaaaaa 45985723  T
Q  262 gaaagaagatgtaccactgtacgattggattacatagtgccaccaccgtttggtttttggctaaagaatgaatttatgtacttgcttaatagccaaagtg 361  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45985724 gaaagaagatgtaccactgtacaattggattacatagtgccaccaccgtttggtttttggctaaagaatgaatttatgtacttgcttaatagctaaagtg 45985823  T
Q  362 tttaagccttaaaaagggtatgcatcatcccctctaaacctagactagctttgaagaattgtggataa 429  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||    
T  45985824 tttaagccttaaaaagggtatgcatcatcccc-ctaaacctagactaactttgaagaattatggataa 45985890  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 45985484 - 45985583
Alignment:
Q  19 gccgtcaaggtgtagattgctcaatttttgaaaagatagcatatgctacaatggatgaagaagcatgagatgtattaaattgtcatgcaaatgagtgaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  45985484 gccgtcaaggtgtagattgctcaatttttgaaaagatagcatatgctacaatggatgaagaagcatgagatgtattaaattgtcatgcacatgagggaag 45985583  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 12874126 - 12874060
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 494  Q
    ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  12874126 aactagactcttgacccgtgctaccgcacgggtcctaccgagaagaagttaaacgaataagtcgcaa 12874060  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 495
Target Start/End: Original strand, 11465241 - 11465305
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaat 495  Q
    |||||||||||||||||||| |  |||||||||||| | |  |||| ||||||||||||||||||||    
T  11465241 actagactcttgacccgtgcga--gcacgggtcctaccaaaaagaaattaaacgaataagtcgcaat 11465305  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 429 - 461
Target Start/End: Original strand, 43466671 - 43466703
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtc 461  Q
    |||||||||||||||||||||||||| ||||||    
T  43466671 actagactcttgacccgtgctatcgcccgggtc 43466703  T

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Target: scaffold0238 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 428 - 491
Target Start/End: Complemental strand, 14081 - 14018
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcg 491  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  14081 aactagactcttgacccgtgctatcgcacgggtcctaccgaacagcagttaaacgaataagtcg 14018  T

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Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 27771274 - 27771208
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 494  Q
    ||||||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||||||||    
T  27771274 aactagactcttgacccgtgctaccgcacgggtcctaccaagaagaagttaaacgaataagtcgcaa 27771208  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 494
Target Start/End: Original strand, 27118757 - 27118825
Alignment:
Q  426 ataactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 494  Q
    ||||||||||||||| ||||||| || ||||||||| || |||| ||||||||||||||| ||||||||    
T  27118757 ataactagactcttgtcccgtgcgatagcacgggtcataccgagaagaagttaaacgaatgagtcgcaa 27118825  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 34416744 - 34416800
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaa 484  Q
    ||||||||||||||||||||||| ||||||||||| |  ||| ||||||||||||||    
T  34416744 aactagactcttgacccgtgctaccgcacgggtccaactgagaagaagttaaacgaa 34416800  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 494
Target Start/End: Complemental strand, 24691865 - 24691796
Alignment:
Q  425 gataactagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 494  Q
    ||||||||||||||||||| |||||| ||||||| ||||| | |  |||| |||||| ||||||||||||    
T  24691865 gataactagactcttgaccagtgctaccgcacggatcctaccaaaaagaacttaaacaaataagtcgcaa 24691796  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 494
Target Start/End: Complemental strand, 8813622 - 8813557
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 494  Q
    ||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||    
T  8813622 actagcctcttgacccgtgctatcgcacaggtcctaccgagaagaagttaaacgaataagtcgcaa 8813557  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 429 - 490
Target Start/End: Original strand, 54568374 - 54568435
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtc 490  Q
    ||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  54568374 actagactcttgacccgtgctatcgtatgggtcatatcgagaagaagttaaacgaataagtc 54568435  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 15709462 - 15709422
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtcctatcga 468  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  15709462 aactagactcttgacccgtgctgtcgcacgggtcctatcga 15709422  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 462
Target Start/End: Original strand, 31523590 - 31523626
Alignment:
Q  426 ataactagactcttgacccgtgctatcgcacgggtcc 462  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31523590 ataactagactcttgacccgtgctaccgcacgggtcc 31523626  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 8194616 - 8194658
Alignment:
Q  426 ataactagactcttgacccgtgctatcgcacgggtcctatcga 468  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  8194616 ataattagactcttgacccgtgctgttgcacgggtcctatcga 8194658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Complemental strand, 22734703 - 22734670
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtc 461  Q
    ||||||||||||||| ||||||||||||||||||    
T  22734703 aactagactcttgacacgtgctatcgcacgggtc 22734670  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 491
Target Start/End: Complemental strand, 414583 - 414521
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcg 491  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||  |||||||||||||||||    
T  414583 actagactcttgacacgtgctatcgcacgggtcctaccgagaagttgttaaacgaataagtcg 414521  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 45237755 - 45237689
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaat 495  Q
    |||||||| ||||||||| ||| ||||||||||||   ||| |||||||||||||||||||||||||    
T  45237755 actagactgttgacccgttctaccgcacgggtccttctgagaagaagttaaacgaataagtcgcaat 45237689  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 456 - 491
Target Start/End: Original strand, 12602862 - 12602897
Alignment:
Q  456 cgggtcctatcgagcagaagttaaacgaataagtcg 491  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12602862 cgggtcctaccgagcagaagttaaacgaataagtcg 12602897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Complemental strand, 40911159 - 40911126
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtc 461  Q
    ||||||||||| ||||||||||||||||||||||    
T  40911159 aactagactctcgacccgtgctatcgcacgggtc 40911126  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 426 - 461
Target Start/End: Original strand, 10979758 - 10979793
Alignment:
Q  426 ataactagactcttgacccgtgctatcgcacgggtc 461  Q
    ||||||||||||||||||||||||||||||||||||    
T  10979758 ataactagactcttgacccgtgctatcgcacgggtc 10979793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 429 - 494
Target Start/End: Complemental strand, 9362249 - 9362184
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 494  Q
    |||||||| ||||||||  ||| | ||||||||||   ||| ||||||||||||||||||||||||    
T  9362249 actagactgttgacccgaactaccccacgggtccttctgagaagaagttaaacgaataagtcgcaa 9362184  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 491
Target Start/End: Complemental strand, 10454212 - 10454175
Alignment:
Q  454 cacgggtcctatcgagcagaagttaaacgaataagtcg 491  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  10454212 cacgggttctaccgagcagaagttaaacgaataagtcg 10454175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 494
Target Start/End: Original strand, 37446785 - 37446831
Alignment:
Q  448 ctatcgcacgggtcctatcgagcagaagttaaacgaataagtcgcaa 494  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||    
T  37446785 ctatcgcacgggtactaccgagaagaagttaaacgaataagtcgcaa 37446831  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 14591920 - 14591865
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaa 484  Q
    |||||||||||||||||||||| ||||||||||| |   || ||||||||||||||    
T  14591920 actagactcttgacccgtgctaccgcacgggtccaactaagaagaagttaaacgaa 14591865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 429 - 484
Target Start/End: Complemental strand, 16011511 - 16011456
Alignment:
Q  429 actagactcttgacccgtgctatcgcacgggtcctatcgagcagaagttaaacgaa 484  Q
    |||||||||||||||||||||| ||||||||||| |  ||| |||| |||||||||    
T  16011511 actagactcttgacccgtgctaccgcacgggtccaactgagaagaatttaaacgaa 16011456  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 461
Target Start/End: Original strand, 10643185 - 10643218
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtc 461  Q
    ||||||||||||||||||||||||||| ||||||    
T  10643185 aactagactcttgacccgtgctatcgcccgggtc 10643218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 468
Target Start/End: Complemental strand, 18484659 - 18484619
Alignment:
Q  428 aactagactcttgacccgtgctatcgcacgggtcctatcga 468  Q
    ||||||||| |||||| ||||||||||||||||| ||||||    
T  18484659 aactagacttttgacctgtgctatcgcacgggtcttatcga 18484619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0642 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0642
Description:

Target: scaffold0642; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 7797 - 7755
Alignment:
Q  426 ataactagactcttgacccgtgctatcgcacgggtcctatcga 468  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  7797 ataattagactcttgacccgtgctgttgcacgggtcctatcga 7755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 17710 - 17668
Alignment:
Q  426 ataactagactcttgacccgtgctatcgcacgggtcctatcga 468  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  17710 ataattagactcttgacccgtgctgttgcacgggtcctatcga 17668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 21272 - 21314
Alignment:
Q  426 ataactagactcttgacccgtgctatcgcacgggtcctatcga 468  Q
    |||| ||||||||||||||||||| | ||||||||||||||||    
T  21272 ataattagactcttgacccgtgctgttgcacgggtcctatcga 21314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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