View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18014_high_10 (Length: 291)
Name: NF18014_high_10
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 2111885 - 2112107
Alignment:
| Q |
21 |
cttggcaagatataaataagttacaactaaccagagacaatgaaatacattctacctaaagatgaagtaatgcagtatgcttgtgatgcaagtatagaaa |
120 |
Q |
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| T |
2111885 |
cttggcaagatataaataagttacaactaaccagagacaatgaaatacattctacctaaagatgaagtaatgcagtatgcttgtgatgcaagtatagaaa |
2111984 |
T |
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| Q |
121 |
tgcaactattttaatgaagttttgaggattctaaattgcaaatcaatttcattgtttacatttttcacataccttcagatatttgatacattcaattatg |
220 |
Q |
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| T |
2111985 |
tgcaactattttaatgaagttttgaggattctaaattgcaaatcaatttcattgtttacatttttcacataccttcagatctttgatacattcaattatg |
2112084 |
T |
|
| Q |
221 |
tttggacaaccattttaattaag |
243 |
Q |
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||||||||||||||||||||||| |
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| T |
2112085 |
tttggacaaccattttaattaag |
2112107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 2112134 - 2112185
Alignment:
| Q |
240 |
taagtgcatatataagtcatttctataataaaaagataaaataaagttaaat |
291 |
Q |
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| T |
2112134 |
taagtgcatatataagtcatttctataataaaaagataaaataaagttaaat |
2112185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 14156984 - 14156910
Alignment:
| Q |
120 |
atgcaactattttaatgaagttttgaggattctaaattgcaaatcaatttcattgtttacatttttcacatacctt |
195 |
Q |
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| T |
14156984 |
atgcaactattttaatgaagtttagaggattctaaattgtaaatcaatttcattgtttaga-ctttcacatacctt |
14156910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 14141244 - 14141198
Alignment:
| Q |
146 |
ggattctaaattgcaaatcaatttcattgtttacatttttcacatac |
192 |
Q |
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| T |
14141244 |
ggattctaaattgtaaatcagtttcattgtttacatttttcgcatac |
14141198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 14141329 - 14141258
Alignment:
| Q |
38 |
aagttacaactaaccagagacaatgaaatacattctacctaa-agatgaagtaatgcagtatgcttgtgatg |
108 |
Q |
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||||||||| ||| |||| ||||| ||||| ||||||||| | | ||||| ||||||||||||||||||||| |
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| T |
14141329 |
aagttacaattaatcagatacaataaaatatattctaccttacatatgaaataatgcagtatgcttgtgatg |
14141258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 1037156 - 1037271
Alignment:
| Q |
79 |
aagatgaagtaatgcagtatgcttgtgatgcaagtatagaaatgcaactattttaatgaagttttgaggattctaaattgcaaatcaatttcattgttta |
178 |
Q |
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||||| ||| |||||| ||| |||| | |||||||| | |||||| ||||||||||| ||||| | ||||||||||||| ||||| ||||||| ||||| |
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| T |
1037156 |
aagataaagcaatgcattatacttgggttgcaagtaaacaaatgccactattttaatcaagttcaggggattctaaattgtaaatcgatttcatagttta |
1037255 |
T |
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| Q |
179 |
catttttcacatacctt |
195 |
Q |
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| T |
1037256 |
ca-ttttcacatacctt |
1037271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 6774406 - 6774446
Alignment:
| Q |
249 |
atataagtcatttctataataaaaagataaaataaagttaaa |
290 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
6774406 |
atataagtcatttctataat-aaaagataaaacaaagttaaa |
6774446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 27106049 - 27106010
Alignment:
| Q |
250 |
tataagtcatttctataataaaaagataaaataaagttaaa |
290 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||| |
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| T |
27106049 |
tataagtcatttctataacaaaa-gataaaataaagttaaa |
27106010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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