View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18014_low_1 (Length: 1533)

Name: NF18014_low_1
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18014_low_1
NF18014_low_1
[»] chr1 (3 HSPs)
chr1 (19-1520)||(44377685-44379184)
chr1 (1240-1334)||(12478510-12478604)
chr1 (1239-1280)||(3917806-3917847)
[»] chr8 (4 HSPs)
chr8 (113-276)||(38721345-38721508)
chr8 (525-661)||(38721749-38721885)
chr8 (151-230)||(35927346-35927425)
chr8 (173-242)||(13826635-13826704)
[»] chr3 (1 HSPs)
chr3 (155-230)||(49592507-49592582)
[»] chr2 (2 HSPs)
chr2 (1218-1336)||(29363125-29363244)
chr2 (159-220)||(15170638-15170699)
[»] chr4 (1 HSPs)
chr4 (113-213)||(54383968-54384068)
[»] chr5 (1 HSPs)
chr5 (1260-1334)||(6522066-6522140)


Alignment Details
Target: chr1 (Bit Score: 1428; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 1428; E-Value: 0
Query Start/End: Original strand, 19 - 1520
Target Start/End: Original strand, 44377685 - 44379184
Alignment:
Q  19 gtttgcagttataagaggaggctctttcataggatccacagtactaacaaatatgtcaatatcagataattcacacggctttccttctttctcgtacctc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44377685 gtttgcagttataagaggaggctctttcataggatccacagtactaacaaatatgtcaatatcggataattcacacggctttccttctttctcgtacctc 44377784  T
Q  119 agtgataaacgatcaaggtatgtttctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377785 agtgataaacgatcaaggtatgtttctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactg 44377884  T
Q  219 atgtcaaccacaatgcatatgcatcgttgaccggatggagaattctgtaatgaaaaaagagagcaagaacagcgatccggagtactataatgattcgata 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377885 atgtcaaccacaatgcatatgcatcgttgaccggatggagaattctgtaatgaaaaaagagagcaagaacagcgatccggagtactataatgattcgata 44377984  T
Q  319 tggatttatcttgcttggactgattggtaacttcctccatagcggttgccttccttcatccattctgttaacagtacaagttcatgtaagaaatggattt 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377985 tggatttatcttgcttggactgattggtaacttcctccatagcggttgccttccttcatccattctgttaacagtacaagttcatgtaagaaatggattt 44378084  T
Q  419 tgcaacaagttcatgcaatatataaaccagatgagtatttagatcaaatggtaagaattaaataatggcacctactttggcaaatcgggatcattaaact 518  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  44378085 tgcaacaagttcgtgcaatatataaaccagatgagtatttagatcaaatggtaagaattaaataatagcacttactttggcaaatcgggatcattaaact 44378184  T
Q  519 catcaacattgttgtcaccttcgtgcttaaccacctctaatttttcattctgctttttcttccattcctccactctttctttccatgcaacacttccata 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44378185 catcaacattgttgtcaccttcgtgcttaaccacctctaatttttcattctgctttttcttccattcctccactctttctttccatgcaacacttccata 44378284  T
Q  619 gccataaacagccaaatctttattaggatccatgggtcttggtagaactgcaatagcaccagcaacatagaaataagtttgaacatgcaatatgttaata 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44378285 gccataaacagccaaatctttattaggatccatgggtcttggtagaactgcaatagcaccagcaacatagaaataagtttgaacatgcaatatgttaata 44378384  T
Q  719 tgacacaaaatgcaaatgtttagcaaatgcaaaccataacaaaaacaacttacccggcacaaatgaatcaggaaaaggcataggatgaacccgtttcccg 818  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44378385 tgacacaaaatgcaaatgttgagcaaatgcaaaccaaaacaaaaacaacttacccggcacaaatgaatcaggaaaaggcataggatgaacccgtttcccg 44378484  T
Q  819 cggagcttgtatggagggataatgagagcatgtttatcagaagaaatcccaggatccttaaataacaaaattcataattagacaaataaaagctagaaat 918  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44378485 cggagcttgtatggagggataatgagagcatgtttatcagaagaaatcccaggatccttaaataacaaaattcataattagacaaataaaagctagaaat 44378584  T
Q  919 tatataaacaaatcaagaacaagtgaacaacagacttgaaaattaattaacctcaacctcatgatcatatgtcaggagagagatatcagcagccacagaa 1018  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44378585 tatataaacaaatcaagaac--ttgaacaacagacttgaaaattaattaacctcaacctcatgatcatatgtcaggagagagatatcagcagccacagaa 44378682  T
Q  1019 gccgtgtcaaactctgatggcgtggtgattcttgaagcattcatttgtgaactccgactgatattgttgaggtgagaaaagaacatggcctcagtaatgt 1118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44378683 gccgtgtcaaactctgatggcgtggtgattcttgaagcattcatttgtgaactccgaccgatattgttgaggtgagaaaagaacatggcctcagtaatgt 44378782  T
Q  1119 gatgagggtcatgtttgatattgcttccaatatcaaactcattttccaaatcatcaatcccatcctcttcttcgtcaccctcaactcttggactacctga 1218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44378783 gatgagggtcatgtttgatattgcttccaatatcaaactcattttccaaatcatcaatcccatcctcttcttcgtcaccctcaactcttggactacctga 44378882  T
Q  1219 ttgttagaaaagcaaccctcattcaaaagcaaacagatatgaaaaatacaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcctac 1318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44378883 ttgttagaaaagcaaccctcattcaaaagcaaacagatatgaaaaatacaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcctac 44378982  T
Q  1319 gtctccaactgcagagtgccatacccaaatattggctctgctttgttagccaaaactttttcttccacttatatataacaaagtaaagnnnnnnnnngtc 1418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||    
T  44378983 gtctccaactgcagagtgccatacccaaatattggctctgctttgttagccaaaactttttcttccacttatatataacaaagtaaagaaaaaaaaagtc 44379082  T
Q  1419 ggttgaaggcttaccctttatgcgtttgtatttagttttgcagtgaggacaagcttggttcccttcttgtctttcatactcatagcaaggtctacacaca 1518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44379083 ggttgaaggcttaccctttatgcgtttgtatttagttttgcagtgaggacaagcttggttcccttctcgtctttcatactcatagcaaggtctacacaca 44379182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1240 - 1334
Target Start/End: Original strand, 12478510 - 12478604
Alignment:
Q  1240 ttcaaaagcaaacagatatgaaaaatacaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcctacgtctccaactgcagag 1334  Q
    |||||||| |||||||||  ||| | |||||| || || || ||  ||||||||| || ||| |||||| ||||||||||||||| |||||||||    
T  12478510 ttcaaaagaaaacagatacaaaacacacaaacgaagaagacacgatatttgatcacggtgtttggccaattgtgcctacgtctcctactgcagag 12478604  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1239 - 1280
Target Start/End: Original strand, 3917806 - 3917847
Alignment:
Q  1239 attcaaaagcaaacagatatgaaaaatacaaacaaataacac 1280  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  3917806 attcaaaagtaaacagatatgaaaagcacaaacaaataacac 3917847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 5e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 5e-32
Query Start/End: Original strand, 113 - 276
Target Start/End: Original strand, 38721345 - 38721508
Alignment:
Q  113 tacctcagtgataaacgatcaaggtatgtttctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacata 212  Q
    ||||||||||| | ||| |||||||| |||||||||   | |||  |||||||||||||||||||||  ||||| |||||||||||||| ||||||||||    
T  38721345 tacctcagtgaaagacggtcaaggtacgtttctcgcgttattgggtaccattttggaaactgatccattatccaagatacagcaaaccatatttcacata 38721444  T
Q  213 ttactgatgtcaaccacaatgcatatgcatcgttgaccggatggagaattctgtaatgaaaaaa 276  Q
    | |||||||||| ||||||  |||||||||| || || |||||||||||||| ||||| |||||    
T  38721445 tgactgatgtcagccacaagccatatgcatcattaactggatggagaattctataatggaaaaa 38721508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 525 - 661
Target Start/End: Original strand, 38721749 - 38721885
Alignment:
Q  525 cattgttgtcaccttcgtgcttaaccacctctaatttttcattctgctttttcttccattcctccactctttctttccatgcaacacttccatagccata 624  Q
    ||||||| |||||||| ||||| |||||||  | ||| ||| | ||| |||||||||||||||||| ||  |||||||| || ||||||||||| |||||    
T  38721749 cattgttatcaccttcatgcttcaccacctgaagtttgtcactttgccttttcttccattcctccattcggtctttccaagccacacttccatatccata 38721848  T
Q  625 aacagccaaatctttattaggatccatgggtcttggt 661  Q
     || || |  ||||| || ||| |||| |||||||||    
T  38721849 taccgcaatgtctttcttcggaaccatcggtcttggt 38721885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 35927346 - 35927425
Alignment:
Q  151 aactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactgatgtcaaccaca 230  Q
    ||||||||||||||| || ||||||||||| | ||| || |  ||||||||||| |||||||| |  |||||||||||||    
T  35927346 aactggagaccatttagggaactgatccaacacccaggaaaatgcaaaccaaatctcacatataatagatgtcaaccaca 35927425  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 13826635 - 13826704
Alignment:
Q  173 tgatccaaaatccatgatacagcaaaccaaatttcacatattactgatgtcaaccacaatgcatatgcat 242  Q
    |||||||| ||||| ||||  ||||||||||| || ||||| ||||||  |||||| |||||||||||||    
T  13826635 tgatccaatatccaggatatggcaaaccaaatctcgcatataactgataccaaccataatgcatatgcat 13826704  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 49592507 - 49592582
Alignment:
Q  155 ggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactgatgtcaaccaca 230  Q
    |||||||||||||||||||||||||||||||| || |  ||||||||||| ||||| || ||||| ||||||||||    
T  49592507 ggagaccattttggaaactgatccaaaatccaggaaaatgcaaaccaaatctcacagataactgaagtcaaccaca 49592582  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1218 - 1336
Target Start/End: Complemental strand, 29363244 - 29363125
Alignment:
Q  1218 attgttagaaaagcaaccctcattcaaaagcaaacagatatgaaaaat-acaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcct 1316  Q
    |||||||||| | |||||||  |||||||| |||| |||| ||||||  ||||||| |||| || || ||||||||||  | |||||||||||||| |||    
T  29363244 attgttagaacaacaaccctggttcaaaagtaaacggatacgaaaaaacacaaacagataaaacacgagatttgatcatagtgttcggccaaatgtacct 29363145  T
Q  1317 acgtctccaactgcagagtg 1336  Q
    |||||||  |||||||||||    
T  29363144 acgtctctgactgcagagtg 29363125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 220
Target Start/End: Complemental strand, 15170699 - 15170638
Alignment:
Q  159 accattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacatattactgat 220  Q
    ||||||||||||||||||| |  ||||||||||  |||||||| ||||||||||||||||||    
T  15170699 accattttggaaactgatcaagtatccatgataatgcaaaccatatttcacatattactgat 15170638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 54383968 - 54384068
Alignment:
Q  113 tacctcagtgataaacgatcaaggtatgtttctcgctcaactggagaccattttggaaactgatccaaaatccatgatacagcaaaccaaatttcacata 212  Q
    ||||| ||||| | ||| ||||||||||||||||  ||||  ||| ||||||| || |||||||| |  |||||||||| ||||||||| ||||||||||    
T  54383968 tacctgagtgaaagacggtcaaggtatgtttctctatcaataggataccatttggggaactgatcaaggatccatgatatagcaaaccagatttcacata 54384067  T
Q  213 t 213  Q
    |    
T  54384068 t 54384068  T

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Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1260 - 1334
Target Start/End: Original strand, 6522066 - 6522140
Alignment:
Q  1260 aaaaatacaaacaaataacacgcgggatttgatcagggagttcggccaaatgtgcctacgtctccaactgcagag 1334  Q
    |||||| || ||||| ||||| || |||||||||| || |||| ||||| ||||||||||||||  |||||||||    
T  6522066 aaaaatgcagacaaagaacactcgagatttgatcatggggttcagccaattgtgcctacgtctcagactgcagag 6522140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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