View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18014_low_15 (Length: 276)
Name: NF18014_low_15
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 41337163 - 41336910
Alignment:
| Q |
8 |
ccaagaatatgatcaaaataacataaattttatcttcttatccttcataagccatattaatattaatatatacatcaaaataatcaagtttgtcacctca |
107 |
Q |
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| T |
41337163 |
ccaacaataagatcaaaataacataaattttatcttcttatccttcataagccatattaatattaatatatacatcaaaataatcaagtttgtcacctca |
41337064 |
T |
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| Q |
108 |
agtggtccaacaaattcattgttgtaaagattaaataagtataggactaaaatttccaacgcataagttgaaaagagtccactcttagaacccaagagac |
207 |
Q |
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| T |
41337063 |
agtggtccaacaaattcattgttgtaaagattaaataagtataggactaaaatttccaacgcataagttgaaaagagtccactcttagaacccaagagac |
41336964 |
T |
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| Q |
208 |
gactctcatgataacaccaagcttttatcaatataacactgcgcttgaatatat |
261 |
Q |
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| T |
41336963 |
gactctcatggtaacaccaagcttttatcaatataacactgcgcttgaatatat |
41336910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 261
Target Start/End: Complemental strand, 36135726 - 36135478
Alignment:
| Q |
13 |
aatatgatcaaaataacataaattttatcttcttatccttcataagccatattaatattaatatatacatcaaaataatcaagtttgtcacctcaagtgg |
112 |
Q |
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|||| |||||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36135726 |
aataggatcaaaataacataaatttaattttcttattcttcataagccatattaatgttaatatatacatcaaaataatcaagtttgtcacctcaaatgg |
36135627 |
T |
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| Q |
113 |
tccaacaaattcattgttgtaaagattaaataagtataggactaaaatttccaacgcataagttgaaaagagtccactcttagaacccaagagacgactc |
212 |
Q |
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| T |
36135626 |
tccaacaaattcattgttgtaaagattaaatatgtagaggactaaaatttccaacacataagttgaaaagagtccactcttagaacccaagagacgactc |
36135527 |
T |
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| Q |
213 |
tcatgataacaccaagcttttatcaatataacactgcgcttgaatatat |
261 |
Q |
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||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36135526 |
tcatggtaacaccaagcttttatcaatataacaatgcgcttgaatatat |
36135478 |
T |
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