View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18014_low_2 (Length: 576)
Name: NF18014_low_2
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_low_2 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 46 - 576
Target Start/End: Complemental strand, 40087228 - 40086693
Alignment:
| Q |
46 |
attgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctct |
140 |
Q |
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|||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||| || | |
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| T |
40087228 |
attgacaaaccagatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctat |
40087129 |
T |
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| Q |
141 |
acctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
240 |
Q |
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| T |
40087128 |
acctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
40087029 |
T |
|
| Q |
241 |
acttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaatccaatcgtccagtgtaatttctcttctatatacaagaaataaactatgc |
340 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | |
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| T |
40087028 |
acttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatcc |
40086929 |
T |
|
| Q |
341 |
atgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataataaggttgaaggagt |
440 |
Q |
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| T |
40086928 |
atgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaacaatagatttcaataagaaggttgaaggagt |
40086829 |
T |
|
| Q |
441 |
cataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
540 |
Q |
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| T |
40086828 |
cataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
40086729 |
T |
|
| Q |
541 |
tagtcaagcaatgaaaaatgatacaatatcagctaa |
576 |
Q |
| |
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| T |
40086728 |
tagtcaagcaatgaaaaatgatacagtatcagctaa |
40086693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 576
Target Start/End: Complemental strand, 40061368 - 40060794
Alignment:
| Q |
16 |
tactcaatgcagggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagataaacgggc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
40061368 |
tactcaatgcagggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattctatcctaagacgcgaaataagataaacgggc |
40061269 |
T |
|
| Q |
116 |
aaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggcc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||| |||| |
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| T |
40061268 |
aaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttaggttctgtagctattaacgcttcctcacaaagctttacggcc |
40061169 |
T |
|
| Q |
216 |
ttgtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaat--------------ccaatcgtcc |
301 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||| |||||||| || |||| || |||| ||||||| |||| |||| |
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| T |
40061168 |
ttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaatatatattaaaaaacacaattgtcc |
40061069 |
T |
|
| Q |
302 |
agtgtaatttctcttctatatacaagaaataaactatgcatgtgatattatcaatttatcttcttcgatgtattaccagtgttgta-tttgtgacggcta |
400 |
Q |
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||||||||||||||| | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | | ||||||| ||||| |
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| T |
40061068 |
agtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgatgtattaccggtggtacattttgtgatggcta |
40060969 |
T |
|
| Q |
401 |
caacatgaacaatagat-ttcaataataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctc |
499 |
Q |
| |
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|||||||||||| | || || | || ||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
40060968 |
caacatgaacaacatatatttagtatgtaggctgaagga--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgc |
40060871 |
T |
|
| Q |
500 |
cagtacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaa |
576 |
Q |
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| T |
40060870 |
cggtacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaa |
40060794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 115 - 576
Target Start/End: Complemental strand, 40079393 - 40078920
Alignment:
| Q |
115 |
caaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgcagctattaatgcttcttcacaaagctttatggc |
214 |
Q |
| |
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|||||||||||||| | ||| ||| ||||||||||||| |||||||||| | ||||||||| || | |||||||| |||||||||||||||||||||||| |
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| T |
40079393 |
caaaaatttcaatacataccacctatacctctaggttttgaccaagagatgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggc |
40079294 |
T |
|
| Q |
215 |
cttgtgcacatctttaagatgaccccacttcggctgcctaataactcctgcagcatgtagcgaagatatcaaaaaatcc-----aatcgtccagtgtaat |
309 |
Q |
| |
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|||||| ||||||||||||||||||||||| |||||||||||| ||||||||| | ||| |||||| ||| | | ||| |||||||||||| |
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| T |
40079293 |
cttgtgtacatctttaagatgaccccacttttgctgcctaataattcctgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaat |
40079194 |
T |
|
| Q |
310 |
ttctcttctatatacaagaaataaactatgcatgtgatattatcaatttatcttcttcgatg-------tattaccagtgttgtatttgtgacggctaca |
402 |
Q |
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|||||||||| ||| |||||| |||||||| ||| ||||||| |||||||||||||||| | ||||||||||| || ||||| || ||||||| |
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| T |
40079193 |
ttctcttctaaataaaagaaaataactatgcgtgtaatattattaatttatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctaca |
40079094 |
T |
|
| Q |
403 |
acatgaacaatagatttcaataataaggttgaaggagtcataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccag |
502 |
Q |
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| T |
40079093 |
acatgaacaaaatatactcgtattaaggttgaaagagtcataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccgg |
40078994 |
T |
|
| Q |
503 |
tacttcggtcaaagttggttcctccatggtactgtttttagtcaagcaatgaaaaatgatacaatatcagctaa |
576 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||| | ||| |||||| |
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| T |
40078993 |
tacttcggtcaaagttggttcctccatggtactgtttttgggcaagcaataaaaaatgataaagtattagctaa |
40078920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
183 |
gctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgaccccacttcggctgcctaataactcctgca |
266 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||||| |||||| |||||||| |
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| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 540
Target Start/End: Original strand, 22014420 - 22014519
Alignment:
| Q |
441 |
cataccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
540 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
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| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 535
Target Start/End: Original strand, 52548938 - 52548999
Alignment:
| Q |
474 |
ataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
535 |
Q |
| |
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|||||||||||||||||| ||||| |||| | |||| |||||||| ||||||||||| |||| |
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| T |
52548938 |
ataacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 35259417 - 35259377
Alignment:
| Q |
443 |
taccatactcatcaatcggtgcatcaaaatcataacttgta |
483 |
Q |
| |
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|||||||||||||||| || |||||| |||||||||||||| |
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| T |
35259417 |
taccatactcatcaattggagcatcataatcataacttgta |
35259377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 535
Target Start/End: Complemental strand, 52647440 - 52647348
Alignment:
| Q |
443 |
taccatactcatcaatcggtgcatcaaaatcataacttgtagcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtact |
535 |
Q |
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||||||| |||||||| || |||||| | ||||| ||||||| ||||||||| || |||| ||| |||| ||||||||||||||||||| |
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| T |
52647440 |
taccatattcatcaattggagcatcatagtcatagcttgtagaaatgaatggacccccagctgatcgtccaaaattggttcctccatggtact |
52647348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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