View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18014_low_3 (Length: 541)
Name: NF18014_low_3
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 303 - 523
Target Start/End: Complemental strand, 39272046 - 39271826
Alignment:
| Q |
303 |
actgttgaagttattgatattaacattttatcactttttcctttatctaatgtaacccttgtttttgtgaacttaactggacagatacatgtgccgcttg |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39272046 |
actgttgaagttattgatattaacattttatcactttttcctttatctaatgtaacccttgtttttgtgaacttaactggacagatacatgtgccgcttg |
39271947 |
T |
|
| Q |
403 |
acccgcctcagtggaccttggatccaagaaaattgcttacatcaattactgagagaactaaagccattatactgaataggttagaaattacacataaata |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39271946 |
acccgcctcagtggaccttggatccaagaaaattgcttacatcaattactgagagaactaaagccattatactgaataggttagaaattacacataaata |
39271847 |
T |
|
| Q |
503 |
atctcaaatgatttcatattt |
523 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39271846 |
atctcaaatgatttcatattt |
39271826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 48 - 296
Target Start/End: Complemental strand, 27695583 - 27695335
Alignment:
| Q |
48 |
tatcattcactatgccaaacaacacagggctttgaaaagcataccagtaatcactttcccttttgatagacctgcnnnnnnnnttaaagatgtgtaactc |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27695583 |
tatcattcactatgccaaacaacacagggctttgaaaagcataccagcaatcactttcccttttgatagacctgcaaaaaaaattaaagatgtgtaactc |
27695484 |
T |
|
| Q |
148 |
attatgaaatggagagtatagcatcataatttctttgtgaagctaaataaaagaaactgcacctttattgatgcctatgcaatcaaattcatgttgagat |
247 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27695483 |
attatgaaatgaagagtataacatcataatttctttgtgaagctaaataaaagaaactgtacctttatcgatgcctatgcaatcaaattcatgttgagat |
27695384 |
T |
|
| Q |
248 |
gcgtatctgttggccttgcattgcccaccttttcgctcacaggttctgc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27695383 |
gcgtatctgttggccttgcattgcccaccttttcgctcacagtttctgc |
27695335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University