View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18014_low_5 (Length: 409)
Name: NF18014_low_5
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Original strand, 31637888 - 31638273
Alignment:
| Q |
18 |
aagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaatttta |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31637888 |
aagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaatttta |
31637987 |
T |
|
| Q |
118 |
gctctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatgaagcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31637988 |
gctctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatgaagcc |
31638087 |
T |
|
| Q |
218 |
tgatgcaaccgtagatccattgagtgttcatggttagtaactctttttcgctatctaatgtttttgctc-------aatnnnnnnnnnnntgttgtatta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
31638088 |
tgatgcaaccgtagatccattgagtgttcatggttagtaactctttttcgctatctaatgtttttgctcaataaaaaataaaaataaaaatgttgtatta |
31638187 |
T |
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| Q |
311 |
aaatagttgtctaaatatcactttctctttaatttatcagtaaatgttagggttatgttcgattttatggtttgaaccctggacct |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31638188 |
aaatagttgtctaaatatcactttctctttaatttatcagtaaatgttagggttatgttcgattctatggtttgaaccctggacct |
31638273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 31646595 - 31646838
Alignment:
| Q |
18 |
aagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaatttta |
117 |
Q |
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| T |
31646595 |
aagttgatattggtgtgcac--tttttgg-ttttgatgatacaattcaaatgttgaagaagggggtgagacagtgtttccatttgctgagggaaatttta |
31646691 |
T |
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| Q |
118 |
gctctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatgaagcc |
217 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||| | |||||||| |
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| T |
31646692 |
gctctgtgccttggtggaatgagctttcggattgtggaaaaaaaggactttcaattaagccaaagatgggtgatgcattacttttctggagtatgaagcc |
31646791 |
T |
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| Q |
218 |
tgatgcaaccgtagatccattgagtgttcatggttagtaactctttt |
264 |
Q |
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|||| ||| |||||||| ||||| | ||||||||||| ||||||| |
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| T |
31646792 |
agatggaactttagatccactgagtatgcatggttagtatctctttt |
31646838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 31652103 - 31652327
Alignment:
| Q |
18 |
aagttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaatttta |
117 |
Q |
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||||||||||||| || ||| || ||||| || ||||||||||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||||| |
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| T |
31652103 |
aagttgatattggagttcactttttttgtaattcgatgatacagttcagatgtcgaagaagggggtgagacggtgtttccaaatgccaagggaaatttta |
31652202 |
T |
|
| Q |
118 |
gctctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatgaagcc |
217 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31652203 |
gctctgtgccttggtggaatgagctttccgattgtggaaaaggaggactatcaattaagccaaagatgggtaatgctatacttttctggagcatgaagcc |
31652302 |
T |
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| Q |
218 |
tgatgcaaccgtagatccattgagt |
242 |
Q |
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||||||||| ||||||||| |||| |
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| T |
31652303 |
tgatgcaactttagatccatcgagt |
31652327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 31630570 - 31630803
Alignment:
| Q |
20 |
gttgatattggtgtgcacacttcttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaattttagc |
119 |
Q |
| |
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|||||||||||||| ||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||| ||||| |
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| T |
31630570 |
gttgatattggtgtccac--tttttgtaaattgattatacagttcagatgttgaagaagggggtgagacagtgttcccagctgccaaggggaatattagc |
31630667 |
T |
|
| Q |
120 |
tctgtgccttggtggaatgagctttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatgaagcctg |
219 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| ||| |||||||||| | |
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| T |
31630668 |
tctgtgccttggtggaatgagctttcggattgtggaaaaaaaggactttcaattaagccaaagatgggtgatgcattacttttttggagcatgaagccag |
31630767 |
T |
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| Q |
220 |
atgcaaccgtagatccattgagtgttcatggttagt |
255 |
Q |
| |
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||| ||| ||||||||| |||| | |||||||||| |
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| T |
31630768 |
atggaactttagatccatcgagtttgcatggttagt |
31630803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 31656932 - 31657131
Alignment:
| Q |
43 |
ttgtattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaattttagctctgtgccttggtggaatgagct |
142 |
Q |
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||||| || ||| ||||||||| ||||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
31656932 |
ttgtaattcgataatacagttcggatgttgaagaagggggtgagacggtgttcccaaatgccaagggaaattttagctctgtgccttggtggaatgagct |
31657031 |
T |
|
| Q |
143 |
ttctgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatgaagcctgatgcaaccgtagatccattgagt |
242 |
Q |
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||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |
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| T |
31657032 |
ttccgattgtggaaaaggaggactgtcaattaagccaaagatgggtaatgctatacttttctggagcatgaagcctgatgcaactttagatccatcgagt |
31657131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 9104936 - 9104756
Alignment:
| Q |
46 |
tattttgatgatacagttcagatgttgaagaagggggtgagacagtgtttccatctgctaagggaaattttagctctgtgccttggtggaatgagctttc |
145 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| ||||| || |||||| |||| ||||||||||| |
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| T |
9104936 |
tattttaatgatacagtacagatgttgaagaagggggtgagacagtgttccctgctgctaaggggaatttcagtaatgtgccgtggtataatgagctttc |
9104837 |
T |
|
| Q |
146 |
tgattgtggaaaaaagggactttcaattaagccaaagatgggtaatgctatacttttctggggcatgaagcctgatgcaac |
226 |
Q |
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||||||||| ||||| |||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||| |||||||| |
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| T |
9104836 |
tgattgtgggaaaaaaggactttcaattaagccaaagagaggtgatgctttacttttctggagcatgaagccggatgcaac |
9104756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 53547752 - 53547682
Alignment:
| Q |
69 |
gttgaagaagggggtgagacagtgtttccatctgctaagggaaattttagctctgtgccttggtggaatga |
139 |
Q |
| |
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||||||||||| |||||||| || ||||| ||||||||| || ||||| |||||||| ||||||||||| |
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| T |
53547752 |
gttgaagaaggaggtgagaccgtatttcctgctgctaaggcgaactttagttctgtgccatggtggaatga |
53547682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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