View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18014_low_6 (Length: 406)
Name: NF18014_low_6
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 393
Target Start/End: Complemental strand, 29358245 - 29357871
Alignment:
| Q |
19 |
ctataatctatagtccatacgatcctcaacctgaggtttggccatctcctttaggagtccaaagggtgctttcaaagttccgaaaaatgcctgaattgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
29358245 |
ctataatctatagtccatacgatcctcaacctgaggtttggccatctcctttaggagtccaaagggtgctatcaaagttccgaaaaatgcctgaattgga |
29358146 |
T |
|
| Q |
119 |
acaaagcaaaaagatggtgaaccaagagagttttttgaggcagcggattcaaaaggcgaaagatcaattgactaaacaaagaaaggataatagagaaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29358145 |
acaaagcaaaaagatggtgaaccaagagagttttttgaggcagcggattcaaaaggcgaaagatcaattgactaaacaaagaaaggataatagagaaaaa |
29358046 |
T |
|
| Q |
219 |
gaaatgactcagttaatgtttcagtaccttagtgctgatcaagttatgcacaatataagcatggttgatttgaatgatatggcatggttgattgatcagt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29358045 |
gaaatgactcagttaatgtttcagtaccttagtgctgatcaagttatgcacaatataagcatggttgatttgaatgatatggcatggttgattgatcagt |
29357946 |
T |
|
| Q |
319 |
atttgaaagatatcaataggagggttgaaatgttgagcaggaatggtcaaggtcaaggtcaaactcaaactcaaa |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29357945 |
atttgaaagatatcaataggagggttgaaatgttgagcaggaatggtcaaggtcaaggtcaaactcaaactcaaa |
29357871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 75 - 288
Target Start/End: Complemental strand, 33046341 - 33046128
Alignment:
| Q |
75 |
gtccaaagggtgctttcaaagttccgaaaaatgcctgaattggaacaaagcaaaaagatggtgaaccaagagagttttttgaggcagcggattcaaaagg |
174 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | || || | || ||||||| |
|
|
| T |
33046341 |
gtccaaagggtccttaacaagttaagaaaaatgcctgaattggaacaaagcaaaaagatggtgaatcaagagagttttctaagacaaagaatccaaaagg |
33046242 |
T |
|
| Q |
175 |
cgaaagatcaattgactaaacaaagaaaggataatagagaaaaagaaatgactcagttaatgtttcagtaccttagtgctgatcaagttatgcacaatat |
274 |
Q |
| |
|
||||||| |||||||| |||||||| || |||||||||||||| ||||||||||| | |||||||| || ||||||| | | || ||||| |||| || |
|
|
| T |
33046241 |
cgaaagagcaattgacaaaacaaaggaaagataatagagaaaaggaaatgactcatctcatgtttcaatatattagtgcaggtaaacttatggacaacat |
33046142 |
T |
|
| Q |
275 |
aagcatggttgatt |
288 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
33046141 |
aagtatggttgatt |
33046128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 33046137 - 33046085
Alignment:
| Q |
302 |
atggttgattgatcagtatttgaaagatatcaataggagggttgaaatgttga |
354 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||| |||||||||||||||| |
|
|
| T |
33046137 |
atggttgattgatcaatacttgaaagagattaatagaagggttgaaatgttga |
33046085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University