View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18014_low_7 (Length: 358)
Name: NF18014_low_7
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 11744219 - 11743889
Alignment:
| Q |
1 |
ataattcactataattatatgtgtccgaattgtgtcggtgttagaaacgatacatatcccacaccgaaatacgctaaatctaaggagtgttcatgcttca |
100 |
Q |
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| T |
11744219 |
ataattcagtgtaattatatgtgtctgtattgtgtcggtgtcagaaacgatacatatcccacaccgaaatgcgctaaatctaaggagtgttcatacttca |
11744120 |
T |
|
| Q |
101 |
taggttcagattcgttcagattcgaagttgacaaagagaatcatacctgatttattagcattactgattagctcatactttgcagagaacatgtccacat |
200 |
Q |
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| T |
11744119 |
taggttcagattcgat----------gttgacaaagagaatcatacctgatttattagcattactgattagctcatactttgcagagaacatgtccacat |
11744030 |
T |
|
| Q |
201 |
atgtgaaagaagcatcatggaattgttcccttaatttgacaacaacatctttaagctttttattgaactctctggccaagttgtttgggtgattaacaca |
300 |
Q |
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| T |
11744029 |
atgtgaaagaagcatcatggaactgttcccttaatttgacaacaacatctttaagctttttattgaactctctggccaagttgtttgggtgattaacaca |
11743930 |
T |
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| Q |
301 |
gccgttttgatcaagataaccagccacttgagtttggctgt |
341 |
Q |
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| T |
11743929 |
gccgttttgatcaagataaccagccacttgagtttggctgt |
11743889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 122 - 337
Target Start/End: Complemental strand, 11738143 - 11737928
Alignment:
| Q |
122 |
tcgaagttgacaaagagaatcatacctgatttattagcattactgattagctcatactttgcagagaacatgtccacatatgtgaaagaagcatcatgga |
221 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
11738143 |
tcgatgttgacaaagaggatcatacctgatttattagcattactgattagctcatactttgcagagaacatatccacataggtgaaagaagcatcatgga |
11738044 |
T |
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| Q |
222 |
attgttcccttaatttgacaacaacatctttaagctttttattgaactctctggccaagttgtttgggtgattaacacagccgttttgatcaagataacc |
321 |
Q |
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| T |
11738043 |
actgttcccttaatttgacaactatatctttaagctttttattgaactctttggccaagtcgttctgcgaattgacgcagccgttttgatcaagataacc |
11737944 |
T |
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| Q |
322 |
agccacttgagtttgg |
337 |
Q |
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| T |
11737943 |
aaccacttgagtttgg |
11737928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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