View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18014_low_8 (Length: 323)
Name: NF18014_low_8
Description: NF18014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18014_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 312
Target Start/End: Original strand, 38267770 - 38268065
Alignment:
| Q |
16 |
ctaacaacaaatgtgaatgtagcaggaaaccggaagggctggtctgctgcaatggacaataaatcttcgcctgtttaaaggatgagagttataagtaagt |
115 |
Q |
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| T |
38267770 |
ctaacaacaaatgtgaatgtagcaggaaaccggaagggctggtctgctgcaatggacaataaatcttcgcctgtttaaaggatgagagttataagtaagt |
38267869 |
T |
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| Q |
116 |
gaaaagcctctggactgcataatgttattgaactaatagcattttttccccagatagaacccaaactatgtttggagtttagacaaatgcttcaagaggt |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38267870 |
gaaa-gcctctggactgcataatgttattgaactaatagcattttttccccagatagaacccaaactatgtttggagtttagacaaatgcttcaagaggt |
38267968 |
T |
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| Q |
216 |
cagcttttgcccaaacatggtttggggatctccctactgaaattaaacatttcttcattaatcctcgccccatttataaccttcccatcatacctat |
312 |
Q |
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| T |
38267969 |
cagcttttgcccaaacatggtttcgggatctccctactgaaattaaacatttcttcattaatcctcaccccatttataaccttcccatcatacctat |
38268065 |
T |
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Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 43230492 - 43230570
Alignment:
| Q |
16 |
ctaacaacaaatgtgaatgtagcaggaaaccggaagggctggtctgctgcaatggacaataaatcttcgcctgtttaaa |
94 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||| ||||| |
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| T |
43230492 |
ctaacaacaaatgtaaatgtagcaggaaaccggaagggttggtctgatgatatggataataaatcttcacctgattaaa |
43230570 |
T |
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