View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18015_high_1 (Length: 541)
Name: NF18015_high_1
Description: NF18015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18015_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 4648019 - 4647498
Alignment:
| Q |
1 |
ggaatacgtgggaaacaaaatctctcacaaacttaatatttgctccccaaaattgggtcttttttaatgggaggggaggtaagctattacaattttagtg |
100 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4648019 |
ggaataagtgggacacaaaatctctcacaaactcaatatttgctccccgaaattgggtcttttttaatgggaggggaggtaagctattacaattttagtg |
4647920 |
T |
|
| Q |
101 |
atgttgattgagttaaccttaatcatattttaaaattcaaatttagccaagagaaaacgcagttgggtaggtgtggtggtattgccttggaatcttagag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4647919 |
atgttgattgagttaaccttaatcatattttaaaattcaattttagccaagagaaaacgcagttgggtaggtgtggtggtattgccttggaatcttagag |
4647820 |
T |
|
| Q |
201 |
ttgaatgtgctactcttcaaactctcatgttcaattcccaattcttccaagtaaaaatttagttacactcaatataaactgagaaagtaaaggcaatgtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4647819 |
ttgaatgtgctactcttcaaactctcatgttcaaatcccaattcttccaagtaaaaatttagttacactcaatataaactgagaaagtaaaggcaatgtg |
4647720 |
T |
|
| Q |
301 |
tcaaattagtaatggtgaaatgagtagaaatgtattaagaattagttttcaaagttttctcttttttcactctatctatcctgtccatcaacttattttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4647719 |
tcaaattagtaatggtgaaatgagtagaaatgtattaagaattagttttcaaagttttctcttttttcactctatctatcctgtccatcaacttattttg |
4647620 |
T |
|
| Q |
401 |
aagttgattctggttttacttatatggtaaggttacttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttatagatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4647619 |
aagttgattctggttttacttatatggtaaggttacttttgtgagtttgattgacatataaagaattcaggtgatacagtttttcatatgtttatagatg |
4647520 |
T |
|
| Q |
501 |
atattttggttgaacaatatgc |
522 |
Q |
| |
|
||||||||| |||||| ||||| |
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|
| T |
4647519 |
atattttggctgaacattatgc |
4647498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 395 - 515
Target Start/End: Complemental strand, 4667039 - 4666917
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt |
492 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||| ||||| |||||| ||||||||| ||||||||| || || |
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| T |
4667039 |
attttaaagttgattctatttttacttatatggtaaggttgcatttttgtgagtttgattggcatatcaagaatccaggtgatagagtttttcagatttt |
4666940 |
T |
|
| Q |
493 |
tatagatgatattttggttgaac |
515 |
Q |
| |
|
||||||||||||| ||| ||||| |
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|
| T |
4666939 |
tatagatgatattatggctgaac |
4666917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 401 - 519
Target Start/End: Original strand, 4712075 - 4712195
Alignment:
| Q |
401 |
aagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtttataga |
498 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||||| |||||||| ||||||||| || ||||| | |
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|
| T |
4712075 |
aagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttatcaagaataaaggtgatagagtttttcagatatttatcaa |
4712174 |
T |
|
| Q |
499 |
tgatattttggttgaacaata |
519 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
4712175 |
tgatattttggctgaacaata |
4712195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 397 - 516
Target Start/End: Original strand, 4783831 - 4783952
Alignment:
| Q |
397 |
tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta |
494 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | | ||||||| | ||||||| || || | |
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|
| T |
4783831 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca |
4783930 |
T |
|
| Q |
495 |
tagatgatattttggttgaaca |
516 |
Q |
| |
|
||||||||| ||||| |||||| |
|
|
| T |
4783931 |
tagatgatagtttggctgaaca |
4783952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 395 - 522
Target Start/End: Original strand, 4846009 - 4846138
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt |
492 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||| | || |||||| |||||||| ||||||||| || || |
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|
| T |
4846009 |
atttcgaagttgattctagttttacttatatggtaaggttacatttttgtgagtttgatctgcttaccaagaataaaggtgatagagtttttcagatatt |
4846108 |
T |
|
| Q |
493 |
tatagatgatattttggttgaacaatatgc |
522 |
Q |
| |
|
||| |||||||||||| ||||| |||||| |
|
|
| T |
4846109 |
tatcaatgatattttggctgaactatatgc |
4846138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 515
Target Start/End: Original strand, 4816260 - 4816380
Alignment:
| Q |
397 |
tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta |
494 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || | | ||||||| | ||||||| || || | |
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|
| T |
4816260 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaaacaggatggtgatagaatttttcagattttca |
4816359 |
T |
|
| Q |
495 |
tagatgatattttggttgaac |
515 |
Q |
| |
|
||||||||| ||||| ||||| |
|
|
| T |
4816360 |
tagatgatagtttggctgaac |
4816380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 397 - 514
Target Start/End: Complemental strand, 4636956 - 4636837
Alignment:
| Q |
397 |
tttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgttta |
494 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||| || || |||||||| ||| ||||| || || | |
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|
| T |
4636956 |
tttgaagttgattctgcttttacttatatggtaaggttacatttttgtgagtttgattggcatatcaactataaaggtgatagagtctttcagatattca |
4636857 |
T |
|
| Q |
495 |
tagatgatattttggttgaa |
514 |
Q |
| |
|
||||| | | |||||||||| |
|
|
| T |
4636856 |
tagataacactttggttgaa |
4636837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 4643772 - 4643714
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat |
451 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4643772 |
attttgaggttgattctggttttacttatatggtaaggttacatttttgtgagtttgat |
4643714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 451
Target Start/End: Complemental strand, 4864023 - 4863965
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgat |
451 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4864023 |
attttgaagttgattctaattttacttatatggtaaggttacatttttgtgagtttgat |
4863965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 395 - 450
Target Start/End: Complemental strand, 4631028 - 4630971
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga |
450 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
4631028 |
attttgaagttgattcttcttttacttatatggtaagattacatttttgtgagtttga |
4630971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 451
Target Start/End: Original strand, 4697184 - 4697242
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggtt--acttttgtgagtttgat |
451 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
4697184 |
atttcgaagttgatgttggttttacttatatggtaaggttgcatttttgtgagtttgat |
4697242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 450
Target Start/End: Complemental strand, 4672777 - 4672720
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttga |
450 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
4672777 |
attttgaggttgattcttctttcacttatatggtaaggttacatttttgtgagtttga |
4672720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 515
Target Start/End: Original strand, 18925736 - 18925858
Alignment:
| Q |
395 |
attttgaagttgattctggttttacttatatggtaaggttac--ttttgtgagtttgattgacatataaagaatgcaggtgatacagtttttcatatgtt |
492 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| || | ||||| ||||||||||| |||||||||||| |||||||| ||||||||| || || |
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|
| T |
18925736 |
attttgaagttgattctgcctttacttatttggtaagattgcatttttgcgagtttgattggcatataaagaatcaaggtgatagagtttttcagatttt |
18925835 |
T |
|
| Q |
493 |
tatagatgatattttggttgaac |
515 |
Q |
| |
|
||||||||||| ||||| ||||| |
|
|
| T |
18925836 |
tatagatgataatttggctgaac |
18925858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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