View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18015_low_6 (Length: 315)

Name: NF18015_low_6
Description: NF18015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18015_low_6
NF18015_low_6
[»] chr7 (19 HSPs)
chr7 (10-296)||(26204424-26204710)
chr7 (10-296)||(26224062-26224347)
chr7 (10-296)||(26155727-26156013)
chr7 (10-296)||(26191804-26192090)
chr7 (10-296)||(26260411-26260697)
chr7 (24-296)||(26251387-26251659)
chr7 (28-296)||(19102887-19103155)
chr7 (10-222)||(26088395-26088607)
chr7 (10-222)||(26112183-26112395)
chr7 (10-296)||(26242939-26243225)
chr7 (10-296)||(26302348-26302634)
chr7 (10-296)||(26179622-26179908)
chr7 (10-222)||(26186862-26187073)
chr7 (10-296)||(26297987-26298273)
chr7 (28-296)||(26129106-26129374)
chr7 (25-296)||(26207950-26208221)
chr7 (17-296)||(26227511-26227790)
chr7 (10-296)||(26278238-26278521)
chr7 (24-71)||(41562683-41562730)
[»] chr4 (1 HSPs)
chr4 (26-296)||(44903792-44904062)
[»] chr5 (2 HSPs)
chr5 (256-296)||(5995044-5995084)
chr5 (24-131)||(17572423-17572530)
[»] chr6 (1 HSPs)
chr6 (35-131)||(12613700-12613796)
[»] chr8 (1 HSPs)
chr8 (150-218)||(16908691-16908759)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26204710 - 26204424
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204710 acatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 26204611  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204610 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 26204511  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26204510 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgaccagaattttc 26204424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26224347 - 26224062
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26224347 acatcaacaagcagcttctcattgtaaaattgttcagcaaatattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 26224248  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26224247 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 26224148  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26224147 tttctc-aaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgaccagaattttc 26224062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26156013 - 26155727
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | ||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  26156013 acatcaacaagcaacttttcattgtaaaattgatcaccaaacattggccatgtaatcattggcaaaccagaattcaagctttcgagagttgagttccaac 26155914  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  26155913 cacagtgagtcacaatccctcctgttgcagggtgatccaatatcagaagctgtggtgcccaattccatatgatatatccctttttgctttctttcatcct 26155814  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    || ||||||||||   || |||   | |||||  |||||  | |||||||  || |||||||| || ||||||||||||||||||||    
T  26155813 ttcctcaaaatcttgaaggaaagtgttttcactctcatcgctctcctttttccttacaacccagataaaattatgacctgaattttc 26155727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26192090 - 26191804
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | |||||||||||||||||| || |||||||||||||| |  |||||||||||||||| |||||||||||||||||| ||||||||||    
T  26192090 acatcaacaagcaacttctcattgtaaaattgctcggcaaacattggccacgcgatcattggcaaaccagcattcaagctttcaagaatcgagttccaac 26191991  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26191990 cacagtgagtcacaattccacctgttgcagggtgatccaatatctgaagctgtggtgcccaattccatatgatatagccctttttgctttctttcatcct 26191891  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    |  ||||||||||   || ||||  | |||||  |||||  |||| ||||  || |||||||| || ||||||||||||||||||||    
T  26191890 tccctcaaaatcttgtaggaaactgttttcactctcatccatatcatttttccttacaacccagataaaattatgacctgaattttc 26191804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26260697 - 26260411
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | |||||||||||||||||| |||||||||||||||||||  |||||||||||||| || |||||||||||||||||||||||||| |    
T  26260697 acatcaacaagcaacttctcattgtaaaattgctcagcaaacattggccatgcaatcattggcaaacccgagttcaagctttcaagaattgagttccatc 26260598  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    |||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26260597 cacagtgagtcacaatccctcctgttgcagggtgatccaatataaggagctgtggtgcccaattccatatgatatagccctttttgctttctttcatcct 26260498  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    || |||||||||    |||||||  ||||   | ||  ||   || ||||  |||||||||||||||||||||||||||||||||||    
T  26260497 ttgctcaaaatcatgaagaaaactgtctttgacttcgcctccgtcttttttcctaacaacccaaatgaaattatgacctgaattttc 26260411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 296
Target Start/End: Complemental strand, 26251659 - 26251387
Alignment:
Q  24 cttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtgagtcaca 123  Q
    |||||||||||||||||| |||||||||| |||||| || |||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||    
T  26251659 cttctcattgtaaaattgctcagcaaacactggccacgtgatcattggcaaaccagcatttaagctttcaagagttgagttccaaccacaatgagtcaca 26251560  T
Q  124 attcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctcaaaatcta 223  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||||| | |     
T  26251559 attcctcctgttgcagggtgatccaatatcagaagttgtggtgcccaattccagatgatatagcccttgttgctttctttcatcctttcctcaaattttt 26251460  T
Q  224 tcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
     || |||||||||| || | ||||||||||| | || | | | |||||| || ||||||||||||||||||||    
T  26251459 gcaaaaaaccttctccatcctcatctttatcatctttttttataacccagataaaattatgacctgaattttc 26251387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 28 - 296
Target Start/End: Original strand, 19102887 - 19103155
Alignment:
Q  28 tcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtgagtcacaattc 127  Q
    ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |    
T  19102887 tcattgtaaaactgctcagcaaaaattggccatgtgatcattggcaaacccgaattcaagctttcgagaattgagttccaaccacagtgagtcacaatcc 19102986  T
Q  128 ctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctcaaaatctatcag 227  Q
    ||||||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||   ||    
T  19102987 ctcctgttgcagggtgatccaatatcagaagttgcggtgcccaattccatatgatatatccctttttgctttctttcatccttgcctcaaaatcttgtag 19103086  T
Q  228 aaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    |||||  | |||||  |||||| | || ||||  || |||||||| || ||||||||||||||||||||    
T  19103087 aaaactgttttcactctcatctctctcatttttccttacaacccagataaaattatgacctgaattttc 19103155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 26088607 - 26088395
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | ||| |||||||||||||| |||||||| ||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||    
T  26088607 acatcaacaagcaacttttcattgtaaaattgctcagcaaatattggccatgcgatcattggcaaaccagcattcaagctttcaagaatcgagttccaac 26088508  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26088507 cacagtgagtcacaatccctcctgttgcaggatgatccaatatcagaagttgtggtgcccaattccatatgatatagccctttttgctttctttcatcct 26088408  T
Q  210 tttctcaaaatct 222  Q
    || ||||||||||    
T  26088407 ttcctcaaaatct 26088395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 26112395 - 26112183
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | ||| |||||||||||||| |||||||| ||||||||||  |||||||||||||||| |||||||||||||||||| ||||||||||    
T  26112395 acatcaacaagcaacttttcattgtaaaattgctcagcaaatattggccatgcgatcattggcaaaccagcattcaagctttcaagaatcgagttccaac 26112296  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  26112295 cacagtgagtcacaatccctcctgttgcaggatgatccaatatcagaagttgtggtgcccaattccatatgatatagccctttttgctttctttcatcct 26112196  T
Q  210 tttctcaaaatct 222  Q
    || ||||||||||    
T  26112195 ttcctcaaaatct 26112183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26243225 - 26242939
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | |||||||||||||||||| |||| | ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  26243225 acatcaacaagcaacttctcattgtaaaattgctcagaagacactggccacgtaatcattggcaaaccagaattcaagctttcaagaattgagttccaac 26243126  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||| || || ||||| | |||||||||||||||||| |||||||||||||||||    
T  26243125 cacagtgagtcacaattcctcttgttgctgggtgatccaatatcagaagttgcggtgcccagtcccatatgatatagcccttgttgctttctttcatcct 26243026  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    || |||||| |||  ||| ||||||||| || | ||| ||||||| | || | | | |||||| || ||||||||||||||||||||    
T  26243025 ttcctcaaattcttgcaggaaaccttctccatcctcaactttatcatctttttttataacccagataaaattatgacctgaattttc 26242939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26302634 - 26302348
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||||| |||||| |||| |||||| |||||||| || |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||    
T  26302634 acatcaacaagaaacttctcgttgttaaattgctcagcaaaaatgggccatgtgatcattggcaaaccagcattcaagctttcgagaattgagttccaac 26302535  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
     ||||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||||||||||||    
T  26302534 aacagtgagtcacaatccctcctgttgcagggtgatccaatattagaagctgcggtgcccaattccatatgatatagccttttttgctttctttcatcct 26302435  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    || ||||||  ||  ||| |||||||||||| | |||| | |||| | || ||  || |||||||| ||| ||||||||||||||||    
T  26302434 ttcctcaaatacttgcaggaaaccttcttcatcctcatttctatcatattttcgtacgacccaaataaaactatgacctgaattttc 26302348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26179908 - 26179622
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | |||||| ||||||||||| ||||||||||  ||||| || |||||||||||||| || ||||  ||||||||||||||||||||||    
T  26179908 acatcaacaagcaacttctcgttgtaaaattgctcagcaaacaccggccacgtgatcattggcaaacccgagttcacactttcaagaattgagttccaac 26179809  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||    
T  26179808 cacagtgagtcacaatccctcctgttgcagggtgatctaatatcagaagttgtgatgcccaattccatatgatatagccctttttgctttctttcaacct 26179709  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    || |||||| |||  ||| ||||||||| || | ||||||||||| | || | | | |||||| || ||||| |||||||| |||||    
T  26179708 ttcctcaaattcttgcaggaaaccttctccatcttcatctttatcatatttttttataacccagataaaattttgacctgagttttc 26179622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 26187073 - 26186862
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | |||||||||||||||||| ||  || ||||||||||||| |||||||||||||| || |||| |||||| ||||||||||||||||    
T  26187073 acatcaacaagcaacttctcattgtaaaattgctcctcagacattggccatgtgatcattggcaaacccgagttcacgctttccagaattgagttccaac 26186974  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |     
T  26186973 aacagtgagtcacaatccctcctgttgcagggtgatccaatatcagaagctgtggtgcccaattccatatgatatatccctttttgctttctttcattc- 26186875  T
Q  210 tttctcaaaatct 222  Q
    |||||||||||||    
T  26186874 tttctcaaaatct 26186862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26298273 - 26297987
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | |||||||||||||||||| |||||||| || |||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||    
T  26298273 acatcaacaagcaacttctcattgtaaaattgctcagcaaaaataggccatgtgatcattggcaaaccagcattcaagctttcgagagttgagttccaac 26298174  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||| || || ||||| | ||||||||||||||||||  |||||||||| |||||    
T  26298173 cacaatgagtcacaattcctcctgttgcagggtggtccaatatcagaagttgcggtgcccagtcccatatgatatagcccttgctgctttctttaatcct 26298074  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    || |||||| |||  ||||||||||||| || | |||||| |||| |    | | | |||||| || ||||||||||||||||||||    
T  26298073 ttcctcaaattcttgcagaaaaccttctccatcctcatctgtatcatccctttttataacccagataaaattatgacctgaattttc 26297987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 28 - 296
Target Start/End: Complemental strand, 26129374 - 26129106
Alignment:
Q  28 tcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtgagtcacaattc 127  Q
    |||||||||||||| ||  ||||| |||||||||| |||||||||||||||| ||| |||||||| ||| |||||||||||||||| |||||||||||||    
T  26129374 tcattgtaaaattgatcgccaaaccttggccatgtaatcattggcaaaccagcatttaagctttcgagagttgagttccaaccacaatgagtcacaattc 26129275  T
Q  128 ctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctcaaaatctatcag 227  Q
    ||||| | ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||   ||    
T  26129274 ctcctatggcagggtgatccaatataaggagctgtggtgcccaattccatatgatatagcccttttttctttctttcatcctttcctcaaaatcttgaag 26129175  T
Q  228 aaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
     |||   | |||||  |||||  | |||||||  || |||||||| || ||||||||||||||||||||    
T  26129174 gaaattgttttcactctcatcgctctcctttttccttacaacccatataaaattatgacctgaattttc 26129106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 25 - 296
Target Start/End: Complemental strand, 26208221 - 26207950
Alignment:
Q  25 ttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtgagtcacaa 124  Q
    ||||||||||||||||| |||||||||||||||||||  ||||| || ||||||  | | | ||||||||||||||| ||||||||||| |||||||| |    
T  26208221 ttctcattgtaaaattgctcagcaaacattggccatgcaatcatgggtaaaccaacactaaggctttcaagaattgaattccaaccacaatgagtcacta 26208122  T
Q  125 ttcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctcaaaatctat 224  Q
    | |||||||||||||||||  | ||||| ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| || |||||||      
T  26208121 tccctcctgttgcagggtggcctaatatgagaagctgtggtgcccaattccatatgatatatccctttttgttttctttcatcctttgcttaaaatcttc 26208022  T
Q  225 cagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
     |||||||| ||||||||  | |||  ||| ||||  |||||||||||||||||||||||||| ||||||||    
T  26208021 aagaaaaccatcttcacctccttctccatcttttttcctaacaacccaaatgaaattatgaccggaattttc 26207950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 26227790 - 26227511
Alignment:
Q  17 caagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtg 116  Q
    |||||||||||||||||||||| || || ||||||||||||||||| || |||||||||| |  | ||||||||||||||||||||||||||||||| ||    
T  26227790 caagaagcttctcattgtaaaactgctccgcaaacattggccatgtaataattggcaaactaacactcaagctttcaagaattgagttccaaccacaatg 26227691  T
Q  117 agtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctca 216  Q
    |||||| |  ||| |||||||||||||| | ||||| ||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||| || |    
T  26227690 agtcactacccctgctgttgcagggtgacctaatatgagaagttgtggtgcccaattccatatgatatatccctttttgttttctttcatcctttgctta 26227591  T
Q  217 aaatctatc-agaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    ||||| ||| ||||| || |||||  |  | |||  ||| ||||  |||||||||||||||||||||||||||||||||||    
T  26227590 aaatc-atcaagaaacccgtcttcgtctccttctccatcttttttcctaacaacccaaatgaaattatgacctgaattttc 26227511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 26278521 - 26278238
Alignment:
Q  10 acatcatcaagaagcttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaac 109  Q
    |||||| |||| | |||||||||||||||||  || ||||||| |||||| || |||||||||||||||| ||| | |||||||||| ||||||||||||    
T  26278521 acatcaacaagcaacttctcattgtaaaattcctcggcaaacactggccacgtgatcattggcaaaccagcatttacgctttcaagagttgagttccaac 26278422  T
Q  110 cacagtgagtcacaattcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatcct 209  Q
    |||| ||||||||||| |||||  |||||||||  ||||||||||| || ||||| ||||||| ||||||||| |||||||| |||||||||||||||||    
T  26278421 cacaatgagtcacaatccctccgattgcagggtattccaatatcagcagttgtggtgcccaatcccatatgatgtagcccttgttgctttctttcatcct 26278322  T
Q  210 tttctcaaaatctatcagaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    ||||||||| |||  ||| ||||||||| || | ||||||||||  ||||   | | |||||| || ||||||||||||||||||||    
T  26278321 tttctcaaattcttgcaggaaaccttctccatcctcatctttattatttt---ttataacccagataaaattatgacctgaattttc 26278238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 41562730 - 41562683
Alignment:
Q  24 cttctcattgtaaaattgttcagcaaacattggccatgttatcattgg 71  Q
    |||||||||  | ||||||||||||||||||||||| |||||||||||    
T  41562730 cttctcattaaagaattgttcagcaaacattggccaagttatcattgg 41562683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 26 - 296
Target Start/End: Complemental strand, 44904062 - 44903792
Alignment:
Q  26 tctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtgagtcacaat 125  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  | | | |||||||||| ||||||||||||||||||||||||||||    
T  44904062 tctcattgtaaaattgttcagcaaacattggccatgtgatcattggcaaaccaacactaatgctttcaagagttgagttccaaccacagtgagtcacaat 44903963  T
Q  126 tcctcctgttgcagggtgatccaatatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctcaaaatctatc 225  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||  |    
T  44903962 tcctcctgttgcagggtgatccaatatgagaagctgcggtgcccaattccatatgatatagcccttgttgctttctttcaccctttcctcaaaatcttgc 44903863  T
Q  226 agaaaaccttcttcaccatcatctttatccttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    || |||||||| ||    || ||| |||| ||||  || |||||||| || |||||||||||||| |||||    
T  44903862 aggaaaccttcctcgttctcgtctctatcatttttccttacaacccagataaaattatgacctgacttttc 44903792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 296
Target Start/End: Original strand, 5995044 - 5995084
Alignment:
Q  256 ttttctctaacaacccaaatgaaattatgacctgaattttc 296  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  5995044 ttttttctaacaacccaaatgaaattatgacctgaattttc 5995084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 131
Target Start/End: Original strand, 17572423 - 17572530
Alignment:
Q  24 cttctcattgtaaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtgagtcaca 123  Q
    |||||||||  |||| |||||||||||||  ||||| || | ||| |||||||||  ||||| ||||||||  ||||  ||||||||||| ||| ||||     
T  17572423 cttctcattaaaaaaatgttcagcaaacaaaggccaagtcaccataggcaaaccaacattcatgctttcaactattgtattccaaccacaatgactcacc 17572522  T
Q  124 attcctcc 131  Q
    ||||||||    
T  17572523 attcctcc 17572530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 12613796 - 12613700
Alignment:
Q  35 aaaattgttcagcaaacattggccatgttatcattggcaaaccagaattcaagctttcaagaattgagttccaaccacagtgagtcacaattcctcc 131  Q
    |||||||||||||||| |  ||||| || | ||| ||||| |||  |||||| |||||||  | || |||||||||||| |||||||||||||||||    
T  12613796 aaaattgttcagcaaataaaggccaagtcaccataggcaacccaacattcaaactttcaactactgtgttccaaccacaatgagtcacaattcctcc 12613700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 16908691 - 16908759
Alignment:
Q  150 tatcagaagctgtggggcccaattccatatgatatagccctttttgctttctttcatccttttctcaaa 218  Q
    ||||||||||||||| ||||||  |||||| | |||||| || || ||||||||||| || ||||||||    
T  16908691 tatcagaagctgtggtgcccaaccccatatcaaatagcctttgtttctttctttcattctcttctcaaa 16908759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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