View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18016_high_4 (Length: 238)
Name: NF18016_high_4
Description: NF18016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18016_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 1373257 - 1373481
Alignment:
| Q |
1 |
agtcaactataatatatagattagaatactcattcagttattcttcccttgttcaaaaataaaccagtctgcttacacatagtcttgctgttgggatcca |
100 |
Q |
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| T |
1373257 |
agtcaactataatatatagattagaatactcattcagttattcttcccttgttcaaaaataaaccagtctgcttacacatagtcttgctgttgggatcca |
1373356 |
T |
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| Q |
101 |
tcgttgtctgccatcaaaccttcacttgttccgcaattcatttcagccgatgcagactcatcattgttggacttggcagatgtaaatcggcctttatttc |
200 |
Q |
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| T |
1373357 |
tcgttgtctgccatcaaaccttcacttgttccgcaattcatttcagccgatgcagactcatcattcttggacttggcagatgtaaatcggcctttatttc |
1373456 |
T |
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| Q |
201 |
tttgcatcctaaagaagttacttgt |
225 |
Q |
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| T |
1373457 |
tttgcatcctaaagaagttacttgt |
1373481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 1385070 - 1385199
Alignment:
| Q |
1 |
agtcaactataatatatagattagaatactcattcagttattcttccct--tgttcaaaaataaaccagtctgcttacacatagtcttgctgttgggatc |
98 |
Q |
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||||||| |||||||| |||||||| |||| |||||||| |||| |||| ||||||||| | | |||| |||||||| |||||||||||||||| |
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| T |
1385070 |
agtcaaccataatatacagattagagtactaattcagtttttctaccctcttgttcaaaattgagggagtcaacttacacagtatcttgctgttgggatc |
1385169 |
T |
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| Q |
99 |
catcgttgtctgccatcaaaccttcacttg |
128 |
Q |
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||| ||||||||| ||||||||||||||| |
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| T |
1385170 |
cattattgtctgccgtcaaaccttcacttg |
1385199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 225
Target Start/End: Original strand, 1385209 - 1385255
Alignment:
| Q |
179 |
gatgtaaatcggcctttatttctttgcatcctaaagaagttacttgt |
225 |
Q |
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| T |
1385209 |
gatgtaaattggcctttatttctttgcatcctaaataagttatttgt |
1385255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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