View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18016_low_1 (Length: 426)
Name: NF18016_low_1
Description: NF18016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18016_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 11697349 - 11697760
Alignment:
| Q |
1 |
aaagaaacttggtacaaacacccgggtttagtttaattgaagcaaagaggaaagtgtacaagtttgtttcacaagacaagtctatacctcaatggaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697349 |
aaagaaacttggtacaaacacccgggtttagtttaattgaagcaaagaggaaagtgtacaagtttgtttcacaagacaagtctatacctcaatggaacat |
11697448 |
T |
|
| Q |
101 |
aatctatgagatgattcaccaaatggaatggcagttgaaatttgaagggtacataccagatacatcacaagttttgctcgatgtagacgatgaagaaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697449 |
aatctatgagatgattcaccaaatggaatggcagttgaaatttgaagggtacataccagatacatcacaagttttgctcgatgtagacgatgaagaaaag |
11697548 |
T |
|
| Q |
201 |
aaagagagattgaaatttcatagtcagaagttagcaattgcttttggactcatacatacatctgagggttctcctttaataataacaagaaatcttagga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11697549 |
aaagagagattgaaatttcatagtcagaagttagcaattgcttttggactcatacatacatctgagggttctcctttaagaataacaagaaatcttagga |
11697648 |
T |
|
| Q |
301 |
tgtgtagtgactgtcatacttacactaaatacatttccatgatctatgaaagggaaattactgtaagagatcgtcttcgtttccaccattttaaaaatgg |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11697649 |
tgtgtagtgactgtcatacttacactaaatatatttccatgatctatgaaagggaaattactgtaagagatcgtcttcgtttccaccattttaaaaatgg |
11697748 |
T |
|
| Q |
401 |
aagttgttcatg |
412 |
Q |
| |
|
|||||||||||| |
|
|
| T |
11697749 |
aagttgttcatg |
11697760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University