View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18016_low_3 (Length: 254)
Name: NF18016_low_3
Description: NF18016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18016_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 1372725 - 1372966
Alignment:
| Q |
13 |
gagaagaaacaatgaaggagaagatgaatggtcgaacctaaaccaagaggaagaataagaatgccaggtggaattaataaaaacataaaataatgatata |
112 |
Q |
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| T |
1372725 |
gagaagaaacaatgaaggagaagatgaatgttcgaacctaaaccaagaggaagaataagaatgccaggtggaattaataaaaacataaaataatgatata |
1372824 |
T |
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| Q |
113 |
ttccaaatcagtatgccactttaacacattcataatgacagataaatgaggggaaaaaagtggagaaatgaaatctaaattttttattttatacggacca |
212 |
Q |
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| T |
1372825 |
ttccaaatcagtatgccactttaacacattcataatgacagataaatgaggggaaaaaagtggagaaatgaaatctaaattttttattttatactgacca |
1372924 |
T |
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| Q |
213 |
aaaccgaattggctcaatattacagggaccaaaatcatgatt |
254 |
Q |
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| T |
1372925 |
aaaccgaattggctcaatattacagggaccaaaatcatgatt |
1372966 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 38726763 - 38726700
Alignment:
| Q |
183 |
aaatctaaattttttattttatacggaccaaaaccg-aattggctcaatattacagggaccaaaa |
246 |
Q |
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| T |
38726763 |
aaatctaaacttttttttttatagggactaaaaccggaatttgctca-tattacagggaccaaaa |
38726700 |
T |
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